Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

8037278 .. 8041398

Gene Structure 4121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3057 bp

ATGAAATCAATCATCACTCCTCTCCACCTTTGCTTGTTCCTCCACATCCTCACTCTCTTCGTCACCGGTCAGTCGTCACCATACATTCCGGTCGATAATATCACCCTCGCCTGCGGCAATTCCGGCCAACGGACTTCCAATGACCTCAGAAAGTGGAGCGGAGATATCGACTCAAAATTCACCCCAATAGGTAGCGCATCCGAAGCCATAGATGCACCGCGGTCGGACACAGCCAGCCAAGTCCCTTACACCAAAGCTCGGCTCTCTCGGTCCGAATTCACTTACAAAATTCCCCCCTCTCCCGGTCAAAAGTTCATCCGCTTGCATTTCAATCCAGATACGTACAACTCGAACTTCCAACGCTCCAACTCCCTCTTCTCCGTCACCGCCGCCGGCTTCACTCTCCTCAAAGACTTCAACGCCTCCATCACCGCCGACGCTTCCGGCGGATCCCCGCTGGTCAGAGAATTCTGTGTAAACATCGAGACAGGACAGATACTCGAGATCACCTTCACACCAAGCAAAGATGCGTACGCTTTCATCAACGGAATCGAAATCGTGTCCATGCCCACCGGTTTTTACTACGCTTCAGCTCATACTTTCAGGAATGGAAACCCTTACTCAATAGAAACCACAACAGCTCTGGAGATGGTGTACCGAATCAACGTCGGGGGAGGCCCCATCTCGCCGAACGAAGACACCGGAATGTACCGGACTTGGGAAAATGGAGACGAAATCTATTTGGATTATGCAAGTAGAAAATTGAGCGTGCTACCACAGAACAATACAATCGAGCTCAATTTCGTCAGAGTTCCAGAATACTCTGCCCCAAAAGCAGTTTACACTACAGGTCGGTCAATGGGGATGAACAAAACCATCAACAAGAGCTATAACCTCACATGGGTATTTCCCTTAGATCCCAAGTTTAATTACCTGGTGAGACTCCATTTCTGTGAGTTTGAATCTGATATTACCGAGTACGGTGATCGATCGTTTCAAATCTTCATGGCCAATCAATCCGCAGAAGAACACGCAGATGTCATACGATGGAGTGGAGCAAATGGGAATCCAGTTTACAGAGACTACGTAGTGGACCTGTCTCCGGTTGGAAGCCAGAAGAAAGTTAACCTCTTTCTAGTACTCGCAGCGCTCAAGAATGATAGGTACACTAAATACAACGATGGCATCTTGAACGGACTAGAGATCTTCAAGCTCAGTGACTCAGAAAACAGTCTCGCCGGACCCGACCCGGACTCACCTATATACGTTCCCGACAATCATATCACACTCAACTGTGGCTTCTCAGGCGTTCAATCCGATTCTCACAACGAGAAGTGGACAGGAGATATCAGTTCAACATTTTCACCTATAGAAGTACAGCAAGTTGGTTACACATCACAAGCGAGAAAAGCACCTAATTCCTCCTCTCCCATCATCCGAGTGCCATACACCACAGCACGCATTTCTCGCTTTAATTTTACTTACAGATTTTCCCTCAGTGCCGGCCAAAAGTTCATACGCTTGTACTTCTATCCTGCTTTATACAGCGAAGACTTTGAGCGCTCTGAAGCTCTCTTCTCCGTCACAGCAGGTGGCTATACCCTTCTCAGCGACTTCAATGCTTCTCTTATTGCAGATGCTGGGTACACGGAAACAATACAGAGGGAATTCTGTGTGAACGTTGAAACATATAATCTTGATCTCTCAATTAGTCCAAGCAGGACAAGCTCGAATGCATACGCCTTTATCAATGGAATTGAAATTGTGTCGATGCCACCTAACCTTTACTACTCAGCAGCCGAAAGTCCTGGGATTAAGTATGTGGGAAAAAAAGTCAGCAATCACATTGAAAACAGCACAGCTCTGGAGACGGTCTACAGAATAAACATCGGCGGAAGCCCAATCTCATCCGATAAAGACACCGGCATGTACCGGTCTTGGAATGCCACCGAGGGCATTTTCTGGAATACTACCGATGAACTCTACTTGGATGATATAAGTAGAGAATTCAGCGTTTTACGGTCCACGAGTATTCATCTCAAATTTGACAAAATACCTGAATACACTGCGCCGGATGAAGTTTACCGAACGGGCCGTTCAATGGGGATGAACAAAACCATCAACAAGATCTACAATCTCACTTGGGGATTTCCTGTAGATCCCAAGTTTTCTTACCTGGTTCGGCTCCATTTTTGTGAGTTTGAACCTGAGATTACCTTGTCCGGAGACCGAGTGTTCCTAGTCTACATTGCCAATCAAACTGCTGAAGAACGAGCGGACATTGTCAAGTGGAGTGGTGGAAATGGGATTCCAGTATACAAAGACTATATTGTGTACATGTCTGGCAGGAGAGGCCAGAAGAAAGTAAATATTTGTATCTCATTGCAAGCGAATCCAAAAGATCGGCAGACTAAATACAATGATGGCATCTTAAATGGGCTTGAAATCTTCGAACTATTTGACTCTAATGGCAATTCTGTCGATCCAAAGCCAGTCCCACCACCAGCACCATTGCACAAAATTTCAAACAAGTCGACTCCTGTGATTGTCATCGTTGCAGGTGTACTCTCCAGCATACTTGTGTTCTTTGTCCTCGGATTTTTGGTCGTCAAGCGAAGATCGAAAGCTAAGGACTCCAGCTCCAACAACAGGGCGACGAAGTCTACCATGACCCCTGGATCACCTTTACCACCTTATTTATGTCGTTACTTTTCACTGGCAGAGATCAAGGCTGCCACCAAAAACTTCAATGATACTTTCATTATTGGAGGTGGAGGATTTGGCAACGTGTACAAAGGATGCATCAATGGTGGAGCTACTCCAGTTGCAATCAAACGACTCAAACCAGAGTCATCCCAGGGTGCCCACGAGTTTAAGACGGAAATCGAGATGCTCTCCCAACTCCGTCATCGCCATTTGGTTTCGCTCATTGGATATTGTGCTGATAAAGGTGAGATGATTTTGGTATATGATTACATGGCCCGCGGAACCCTCCGTGACCATCTCTACCACACCGATAAACCACCTCTACCCTGGGAGCAACGGCTTCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

1018

Amino Acids

113.77

Weight (kDa)

6.81

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	37 - 404	1.3e-30	Malectin-like domain
Malectin_like	PF12819	430 - 818	1.5e-24	Malectin-like domain
Malectin	PF11721	625 - 781	2.3e-08	Malectin domain
Pkinase	PF00069	921 - 1003	8.1e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	922 - 1010	7.5e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1580, 2549
Acc36I	ACCTGC	2 cut(s)	1580, 2549
AccB1I	GGYRCC	1 cut(s)	2861
AccBSI	CCGCTC	2 cut(s)	159, 2276
AccI	GTMKAC	5 cut(s)	1875, 2244, 2316, 2534, 2663
AccII	CGCG	2 cut(s)	220, 2985
AccIII	TCCGGA	1 cut(s)	2222
AclI	AACGTT	1 cut(s)	1680
AclWI	GGATC	6 cut(s)	444, 457, 911, 2153, 2477, 2686
AcoI	YGGCCR	3 cut(s)	124, 1008, 1504
AcsI	RAATTY	8 cut(s)	176, 275, 288, 467, 1667, 2006, 2042, 2520
AcuI	CTGAAG	4 cut(s)	573, 1587, 2286, 3032
AfeI	AGCGCT	2 cut(s)	1149, 1562
AfiI	CCNNNNNNNGG	8 cut(s)	129, 258, 302, 718, 901, 1102, 2101, 2649
AflIII	ACRYGT	2 cut(s)	2337, 2787
AgeI	ACCGGT	3 cut(s)	65, 572, 1932
AjnI	CCWGG	6 cut(s)	933, 1807, 2175, 2674, 2856, 3032
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
Alw21I	GWGCWC	1 cut(s)	798
Alw26I	GTCTC	8 cut(s)	479, 723, 934, 1074, 1104, 1238, 1862, 2220
AlwI	GGATC	6 cut(s)	444, 457, 911, 2153, 2477, 2686
AlwNI	CAGNNNCTG	1 cut(s)	1640
Ama87I	CYCGRG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	2222
Aor51HI	AGCGCT	2 cut(s)	1149, 1562
AoxI	GGCC	7 cut(s)	124, 676, 1008, 1504, 2092, 2353, 2979
ApeKI	GCWGC	3 cut(s)	1145, 1796, 2732
ApoI	RAATTY	8 cut(s)	176, 275, 288, 467, 1667, 2006, 2042, 2520
AsiGI	ACCGGT	3 cut(s)	65, 572, 1932
AspLEI	GCGC	4 cut(s)	197, 1150, 1563, 2071
AspS9I	GGNCC	7 cut(s)	270, 677, 1093, 1241, 2022, 2092, 2980
AsuC2I	CCSGG	2 cut(s)	303, 1250
AsuII	TTCGAA	1 cut(s)	2451
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	4 cut(s)	270, 1093, 1241, 2022
BaeGI	GKGCMC	1 cut(s)	2866
BalI	TGGCCA	1 cut(s)	1010
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	2861
BanII	GRGCYC	1 cut(s)	798
BauI	CACGAG	2 cut(s)	2026, 2867
BbsI	GAAGAC	2 cut(s)	702, 1557
Bbv12I	GWGCWC	1 cut(s)	798
BbvI	GCAGC	3 cut(s)	1157, 1808, 2719
BceAI	ACGGC	1 cut(s)	2079
BcgI	CGANNNNNNTGC	6 cut(s)	204, 238, 1601, 1635, 2461, 2495
BciT130I	CCWGG	6 cut(s)	935, 1809, 2177, 2676, 2858, 3034
BcnI	CCSGG	2 cut(s)	303, 1250
BcoDI	GTCTC	8 cut(s)	479, 723, 934, 1074, 1104, 1238, 1862, 2220
BfaI	CTAG	3 cut(s)	1136, 1199, 2240
BfmI	CTRYAG	4 cut(s)	846, 1368, 1876, 2154
BfoI	RGCGCY	2 cut(s)	1151, 1564
BfuAI	ACCTGC	2 cut(s)	1580, 2549
BglII	AGATCT	2 cut(s)	1203, 2127
BisI	GCNGC	5 cut(s)	115, 390, 1146, 1797, 2733
BlsI	GCNGC	5 cut(s)	116, 391, 1147, 1798, 2734
BmcAI	AGTACT	1 cut(s)	1140
Bme1390I	CCNGG	8 cut(s)	303, 935, 1250, 1809, 2177, 2676, 2858, 3034
Bme18I	GGWCC	4 cut(s)	270, 1093, 1241, 2022
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	7 cut(s)	270, 677, 1093, 1241, 2022, 2092, 2980
BmiI	GGNNCC	6 cut(s)	451, 679, 1243, 2186, 2863, 2989
BmrFI	CCNGG	8 cut(s)	303, 935, 1250, 1809, 2177, 2676, 2858, 3034
BpiI	GAAGAC	2 cut(s)	702, 1557
BplI	GAGNNNNNCTC	2 cut(s)	2879, 2911
BpmI	CTGGAG	5 cut(s)	665, 1886, 2554, 2620, 2805
Bpu10I	CCTNAGC	1 cut(s)	2628
Bpu14I	TTCGAA	1 cut(s)	2451
BpuEI	CTTGAG	1 cut(s)	1136
BpuMI	CCSGG	2 cut(s)	303, 1250
Bsa29I	ATCGAT	1 cut(s)	988
BsaAI	YACGTR	2 cut(s)	342, 1087
BsaBI	GATNNNNATC	1 cut(s)	2549
BsaI	GGTCTC	1 cut(s)	2220
BsaWI	WCCGGW	8 cut(s)	65, 88, 572, 701, 711, 1102, 1932, 2222
BsaXI	ACNNNNNCTCC	6 cut(s)	638, 668, 2217, 2247, 2624, 2654
Bsc4I	CCNNNNNNNGG	8 cut(s)	129, 258, 302, 718, 901, 1102, 2101, 2649
Bse118I	RCCGGY	6 cut(s)	65, 392, 572, 1502, 1922, 1932
Bse1I	ACTGG	5 cut(s)	1070, 2312, 2492, 2721, 2822
Bse3DI	GCAATG	3 cut(s)	2247, 2381, 2510
Bse8I	GATNNNNATC	1 cut(s)	2549
BseAI	TCCGGA	1 cut(s)	2222
BseBI	CCWGG	6 cut(s)	935, 1809, 2177, 2676, 2858, 3034
BseCI	ATCGAT	1 cut(s)	988
BseJI	GATNNNNATC	1 cut(s)	2549
BseLI	CCNNNNNNNGG	8 cut(s)	129, 258, 302, 718, 901, 1102, 2101, 2649
BseMI	GCAATG	3 cut(s)	2247, 2381, 2510
BseMII	CTCAG	8 cut(s)	160, 1228, 1236, 1317, 1510, 1621, 1806, 2199
BseNI	ACTGG	5 cut(s)	1070, 2312, 2492, 2721, 2822
BseRI	GAGGAG	3 cut(s)	9, 395, 1414
BseSI	GKGCMC	1 cut(s)	2866
BseXI	GCAGC	3 cut(s)	1157, 1808, 2719
BseYI	CCCAGC	1 cut(s)	1640
Bsh1236I	CGCG	2 cut(s)	220, 2985
Bsh1285I	CGRYCG	3 cut(s)	93, 224, 992
BshFI	GGCC	7 cut(s)	126, 678, 1010, 1506, 2094, 2355, 2981
BshNI	GGYRCC	1 cut(s)	2861
BshTI	ACCGGT	3 cut(s)	65, 572, 1932
BshVI	ATCGAT	1 cut(s)	988
BsiEI	CGRYCG	3 cut(s)	93, 224, 992
BsiHKAI	GWGCWC	1 cut(s)	798
BsiHKCI	CYCGRG	1 cut(s)	500
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	227, 2480
BslI	CCNNNNNNNGG	8 cut(s)	129, 258, 302, 718, 901, 1102, 2101, 2649
BsmAI	GTCTC	8 cut(s)	479, 723, 934, 1074, 1104, 1238, 1862, 2220
BsmBI	CGTCTC	2 cut(s)	723, 1862
BsmFI	GGGAC	2 cut(s)	227, 2480
BsmI	GAATGC	2 cut(s)	1738, 1948
BsnI	GGCC	7 cut(s)	126, 678, 1010, 1506, 2094, 2355, 2981
Bso31I	GGTCTC	1 cut(s)	2220
BsoBI	CYCGRG	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	2451
Bsp1286I	GDGCHC	2 cut(s)	798, 2866
Bsp13I	TCCGGA	1 cut(s)	2222
Bsp1407I	TGTACA	2 cut(s)	2334, 2790
BspANI	GGCC	7 cut(s)	126, 678, 1010, 1506, 2094, 2355, 2981
BspCNI	CTCAG	8 cut(s)	159, 1227, 1235, 1316, 1509, 1620, 1805, 2200
BspDI	ATCGAT	1 cut(s)	988
BspEI	TCCGGA	1 cut(s)	2222
BspFNI	CGCG	2 cut(s)	220, 2985
BspLI	GGNNCC	6 cut(s)	451, 679, 1243, 2186, 2863, 2989
BspMI	ACCTGC	2 cut(s)	1580, 2549
BspPI	GGATC	6 cut(s)	444, 457, 911, 2153, 2477, 2686
BspT104I	TTCGAA	1 cut(s)	2451
BspT107I	GGYRCC	1 cut(s)	2861
BspTNI	GGTCTC	1 cut(s)	2220
BsrBI	CCGCTC	2 cut(s)	159, 2276
BsrDI	GCAATG	3 cut(s)	2247, 2381, 2510
BsrFI	RCCGGY	6 cut(s)	65, 392, 572, 1502, 1922, 1932
BsrGI	TGTACA	2 cut(s)	2334, 2790
BsrI	ACTGG	5 cut(s)	1070, 2312, 2492, 2721, 2822
BssAI	RCCGGY	6 cut(s)	65, 392, 572, 1502, 1922, 1932
BssNAI	GTATAC	1 cut(s)	2317
BssSI	CACGAG	2 cut(s)	2026, 2867
Bst1107I	GTATAC	1 cut(s)	2317
Bst2BI	CACGAG	2 cut(s)	2026, 2867
Bst2UI	CCWGG	6 cut(s)	935, 1809, 2177, 2676, 2858, 3034
Bst4CI	ACNGT	5 cut(s)	983, 1232, 1295, 1873, 2022
Bst6I	CTCTTC	3 cut(s)	62, 380, 1580
BstAUI	TGTACA	2 cut(s)	2334, 2790
BstBAI	YACGTR	2 cut(s)	342, 1087
BstBI	TTCGAA	1 cut(s)	2451
BstC8I	GCNNGC	9 cut(s)	112, 235, 323, 394, 770, 1459, 1504, 2388, 2983
BstDSI	CCRYGG	2 cut(s)	218, 2983
BstFNI	CGCG	2 cut(s)	220, 2985
BstH2I	RGCGCY	2 cut(s)	1151, 1564
BstHHI	GCGC	4 cut(s)	197, 1150, 1563, 2071
BstMAI	GTCTC	8 cut(s)	479, 723, 934, 1074, 1104, 1238, 1862, 2220
BstMCI	CGRYCG	3 cut(s)	93, 224, 992
BstMWI	GCNNNNNNNGC	9 cut(s)	123, 203, 212, 833, 1305, 1409, 1467, 1725, 2352
BstNI	CCWGG	6 cut(s)	935, 1809, 2177, 2676, 2858, 3034
BstNSI	RCATGY	2 cut(s)	1930, 2341
BstSCI	CCNGG	8 cut(s)	301, 933, 1248, 1807, 2175, 2674, 2856, 3032
BstSFI	CTRYAG	4 cut(s)	846, 1368, 1876, 2154
BstSLI	GKGCMC	1 cut(s)	2866
BstSNI	TACGTA	2 cut(s)	342, 1087
BstUI	CGCG	2 cut(s)	220, 2985
BstV1I	GCAGC	3 cut(s)	1157, 1808, 2719
BstV2I	GAAGAC	2 cut(s)	702, 1557
BstX2I	RGATCY	5 cut(s)	449, 916, 1203, 2127, 2158
BstYI	RGATCY	5 cut(s)	449, 916, 1203, 2127, 2158
BstZ17I	GTATAC	1 cut(s)	2317
Bsu15I	ATCGAT	1 cut(s)	988
BsuRI	GGCC	7 cut(s)	126, 678, 1010, 1506, 2094, 2355, 2981
BsuTUI	ATCGAT	1 cut(s)	988
BtgI	CCRYGG	2 cut(s)	218, 2983
BtgZI	GCGATG	1 cut(s)	2894
BtsI	GCAGTG	1 cut(s)	2064
BtsIMutI	CAGTG	4 cut(s)	1222, 1504, 2064, 2714
BveI	ACCTGC	2 cut(s)	1580, 2549
Cac8I	GCNNGC	9 cut(s)	112, 235, 323, 394, 770, 1459, 1504, 2388, 2983
CaiI	CAGNNNCTG	1 cut(s)	1640
CfoI	GCGC	4 cut(s)	197, 1150, 1563, 2071
Cfr10I	RCCGGY	6 cut(s)	65, 392, 572, 1502, 1922, 1932
Cfr13I	GGNCC	7 cut(s)	270, 677, 1093, 1241, 2022, 2092, 2980
Cfr42I	CCGCGG	2 cut(s)	221, 2986
ClaI	ATCGAT	1 cut(s)	988
CpoI	CGGWCCG	1 cut(s)	270
CseI	GACGC	1 cut(s)	446
CsiI	ACCWGGT	2 cut(s)	933, 2175
CspAI	ACCGGT	3 cut(s)	65, 572, 1932
CspCI	CAANNNNNGTGG	2 cut(s)	2275, 2310
CspI	CGGWCCG	1 cut(s)	270
CviAII	CATG	7 cut(s)	565, 900, 1006, 1927, 2338, 2668, 2977
EaeI	YGGCCR	3 cut(s)	124, 1008, 1504
Eam1104I	CTCTTC	3 cut(s)	62, 380, 1580
EarI	CTCTTC	3 cut(s)	62, 380, 1580
EciI	GGCGGA	2 cut(s)	462, 1908
Ecl136II	GAGCTC	1 cut(s)	796
Eco105I	TACGTA	2 cut(s)	342, 1087
Eco24I	GRGCYC	1 cut(s)	798
Eco31I	GGTCTC	1 cut(s)	2220
Eco32I	GATATC	2 cut(s)	166, 1348
Eco47I	GGWCC	4 cut(s)	270, 1093, 1241, 2022
Eco47III	AGCGCT	2 cut(s)	1149, 1562
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	4 cut(s)	573, 1587, 2286, 3032
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	796
EcoO109I	RGGNCCY	1 cut(s)	677
EcoRI	GAATTC	4 cut(s)	275, 467, 1667, 2006
EcoRII	CCWGG	6 cut(s)	933, 1807, 2175, 2674, 2856, 3032
EcoRV	GATATC	2 cut(s)	166, 1348
EcoT22I	ATGCAT	2 cut(s)	1738, 2804
EcoT38I	GRGCYC	1 cut(s)	798
Esp3I	CGTCTC	2 cut(s)	723, 1862
FaeI	CATG	7 cut(s)	568, 903, 1009, 1930, 2341, 2671, 2980
FaqI	GGGAC	2 cut(s)	227, 2480
FatI	CATG	7 cut(s)	564, 899, 1005, 1926, 2337, 2667, 2976
FauI	CCCGC	2 cut(s)	462, 2990
FblI	GTMKAC	5 cut(s)	1875, 2244, 2316, 2534, 2663
Fnu4HI	GCNGC	5 cut(s)	115, 390, 1146, 1797, 2733
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	5 cut(s)	115, 390, 1146, 1797, 2733
FspBI	CTAG	3 cut(s)	1136, 1199, 2240
GlaI	GCGC	4 cut(s)	196, 1149, 1562, 2070
GluI	GCNGC	5 cut(s)	115, 390, 1146, 1797, 2733
GsaI	CCCAGC	1 cut(s)	1644
GsuI	CTGGAG	5 cut(s)	665, 1886, 2554, 2620, 2805
HaeII	RGCGCY	2 cut(s)	1151, 1564
HaeIII	GGCC	7 cut(s)	126, 678, 1010, 1506, 2094, 2355, 2981
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	4 cut(s)	197, 1150, 1563, 2071
Hin1II	CATG	7 cut(s)	568, 903, 1009, 1930, 2341, 2671, 2980
Hin6I	GCGC	4 cut(s)	195, 1148, 1561, 2069
HinP1I	GCGC	4 cut(s)	195, 1148, 1561, 2069
HincII	GTYRAC	2 cut(s)	1126, 2535
HindII	GTYRAC	2 cut(s)	1126, 2535
HpaI	GTTAAC	1 cut(s)	1126
Hpy99I	CGWCG	3 cut(s)	440, 671, 2659
HpyAV	CCTTC	2 cut(s)	520, 1613
HpyCH4III	ACNGT	5 cut(s)	983, 1232, 1295, 1873, 2022
HpyCH4IV	ACGT	6 cut(s)	341, 666, 1086, 1266, 1680, 2787
HpyF10VI	GCNNNNNNNGC	9 cut(s)	123, 203, 212, 833, 1305, 1409, 1467, 1725, 2352
HpySE526I	ACGT	6 cut(s)	341, 666, 1086, 1266, 1680, 2787
Hsp92II	CATG	7 cut(s)	568, 903, 1009, 1930, 2341, 2671, 2980
HspAI	GCGC	4 cut(s)	195, 1148, 1561, 2069
Kpn2I	TCCGGA	1 cut(s)	2222
KroI	GCCGGC	2 cut(s)	392, 1502
KroNI	GCCGGC	2 cut(s)	394, 1504
KspAI	GTTAAC	1 cut(s)	1126
KspI	CCGCGG	2 cut(s)	221, 2986
LmnI	GCTCC	7 cut(s)	156, 368, 1055, 2190, 2645, 2813, 3037
Lsp1109I	GCAGC	3 cut(s)	1157, 1808, 2719
MabI	ACCWGGT	2 cut(s)	933, 2175
MaeI	CTAG	3 cut(s)	1136, 1199, 2240
MaeII	ACGT	6 cut(s)	341, 666, 1086, 1266, 1680, 2787
MaeIII	GTNAC	8 cut(s)	61, 75, 382, 1217, 1388, 1582, 2705, 2996
MbiI	CCGCTC	2 cut(s)	159, 2276
MflI	RGATCY	5 cut(s)	449, 916, 1203, 2127, 2158
MhlI	GDGCHC	2 cut(s)	798, 2866
MlsI	TGGCCA	1 cut(s)	1010
MluNI	TGGCCA	1 cut(s)	1010
MlyI	GAGTC	9 cut(s)	164, 936, 1214, 1247, 2456, 2530, 2627, 2832, 2858
MmeI	TCCRAC	5 cut(s)	204, 382, 390, 1087, 2667
Mox20I	TGGCCA	1 cut(s)	1010
Mph1103I	ATGCAT	2 cut(s)	1738, 2804
MroI	TCCGGA	1 cut(s)	2222
MroNI	GCCGGC	2 cut(s)	392, 1502
MscI	TGGCCA	1 cut(s)	1010
MseI	TTAA	6 cut(s)	927, 1125, 1473, 1815, 2432, 2874
MslI	CAYNNNNRTG	7 cut(s)	704, 951, 1035, 1439, 1925, 2193, 2579
Msp20I	TGGCCA	1 cut(s)	1010
MspA1I	CMGCKG	3 cut(s)	220, 457, 2985
MspR9I	CCNGG	8 cut(s)	303, 935, 1250, 1809, 2177, 2676, 2858, 3034
Mva1269I	GAATGC	2 cut(s)	1738, 1948
MvaI	CCWGG	6 cut(s)	935, 1809, 2177, 2676, 2858, 3034
MvnI	CGCG	2 cut(s)	220, 2985
MwoI	GCNNNNNNNGC	9 cut(s)	123, 203, 212, 833, 1305, 1409, 1467, 1725, 2352
NaeI	GCCGGC	2 cut(s)	394, 1504
NciI	CCSGG	2 cut(s)	303, 1250
NgoMIV	GCCGGC	2 cut(s)	392, 1502
NlaIII	CATG	7 cut(s)	568, 903, 1009, 1930, 2341, 2671, 2980
NlaIV	GGNNCC	6 cut(s)	451, 679, 1243, 2186, 2863, 2989
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	6 cut(s)	61, 75, 382, 1217, 1582, 2996
NsiI	ATGCAT	2 cut(s)	1738, 2804
NspI	RCATGY	2 cut(s)	1930, 2341
NspV	TTCGAA	1 cut(s)	2451
PaeR7I	CTCGAG	1 cut(s)	500
PaqCI	CACCTGC	2 cut(s)	1580, 2549
PasI	CCCWGGG	2 cut(s)	2857, 3033
PciI	ACATGT	1 cut(s)	2337
PcsI	WCGNNNNNNNCGW	2 cut(s)	347, 1242
PctI	GAATGC	2 cut(s)	1738, 1948
PdiI	GCCGGC	2 cut(s)	394, 1504
PfeI	GAWTC	7 cut(s)	549, 660, 962, 1066, 1319, 2308, 2392
Pfl23II	CGTACG	1 cut(s)	531
PflFI	GACNNNGTC	2 cut(s)	2282, 2659
PinAI	ACCGGT	3 cut(s)	65, 572, 1932
PkrI	GCNGC	5 cut(s)	116, 391, 1147, 1798, 2734
Ple19I	CGATCG	1 cut(s)	992
PleI	GAGTC	9 cut(s)	164, 936, 1214, 1247, 2456, 2530, 2627, 2832, 2857
PpsI	GAGTC	9 cut(s)	164, 936, 1214, 1247, 2456, 2530, 2627, 2832, 2857
Ppu21I	YACGTR	2 cut(s)	342, 1087
PscI	ACATGT	1 cut(s)	2337
Psp124BI	GAGCTC	1 cut(s)	798
Psp1406I	AACGTT	1 cut(s)	1680
Psp6I	CCWGG	6 cut(s)	933, 1807, 2175, 2674, 2856, 3032
PspFI	CCCAGC	1 cut(s)	1640
PspGI	CCWGG	6 cut(s)	933, 1807, 2175, 2674, 2856, 3032
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	6 cut(s)	451, 679, 1243, 2186, 2863, 2989
PspPI	GGNCC	7 cut(s)	270, 677, 1093, 1241, 2022, 2092, 2980
PstNI	CAGNNNCTG	1 cut(s)	1640
PsuI	RGATCY	5 cut(s)	449, 916, 1203, 2127, 2158
PsyI	GACNNNGTC	2 cut(s)	2282, 2659
PvuI	CGATCG	1 cut(s)	992
RseI	CAYNNNNRTG	7 cut(s)	704, 951, 1035, 1439, 1925, 2193, 2579
Rsr2I	CGGWCCG	1 cut(s)	270
RsrII	CGGWCCG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	798
SacII	CCGCGG	2 cut(s)	221, 2986
SalI	GTCGAC	1 cut(s)	2533
SaqAI	TTAA	6 cut(s)	927, 1125, 1473, 1815, 2432, 2874
SatI	GCNGC	5 cut(s)	115, 390, 1146, 1797, 2733
Sau96I	GGNCC	7 cut(s)	270, 677, 1093, 1241, 2022, 2092, 2980
ScaI	AGTACT	1 cut(s)	1140
SchI	GAGTC	9 cut(s)	164, 936, 1214, 1247, 2456, 2530, 2627, 2832, 2858
ScrFI	CCNGG	8 cut(s)	303, 935, 1250, 1809, 2177, 2676, 2858, 3034
SduI	GDGCHC	2 cut(s)	798, 2866
SexAI	ACCWGGT	2 cut(s)	933, 2175
SfcI	CTRYAG	4 cut(s)	846, 1368, 1876, 2154
Sfr274I	CTCGAG	1 cut(s)	500
Sfr303I	CCGCGG	2 cut(s)	221, 2986
SfuI	TTCGAA	1 cut(s)	2451
SgrBI	CCGCGG	2 cut(s)	221, 2986
SinI	GGWCC	4 cut(s)	270, 1093, 1241, 2022
SlaI	CTCGAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	7 cut(s)	704, 951, 1035, 1439, 1925, 2193, 2579
SmlI	CTYRAG	2 cut(s)	500, 1151
SmoI	CTYRAG	2 cut(s)	500, 1151
SnaBI	TACGTA	2 cut(s)	342, 1087
SspI	AATATT	1 cut(s)	2371
SspMI	CTAG	3 cut(s)	1136, 1199, 2240
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	8 cut(s)	301, 933, 1248, 1807, 2175, 2674, 2856, 3032
TaaI	ACNGT	5 cut(s)	983, 1232, 1295, 1873, 2022
TaiI	ACGT	6 cut(s)	344, 669, 1089, 1269, 1683, 2790
TaqII	GACCGA	3 cut(s)	258, 843, 2244
TatI	WGTACW	6 cut(s)	1138, 1375, 1524, 2334, 2563, 2790
TauI	GCSGC	2 cut(s)	117, 392
TfiI	GAWTC	7 cut(s)	549, 660, 962, 1066, 1319, 2308, 2392
Tru1I	TTAA	6 cut(s)	927, 1125, 1473, 1815, 2432, 2874
Tru9I	TTAA	6 cut(s)	927, 1125, 1473, 1815, 2432, 2874
TscAI	CASTG	4 cut(s)	1222, 1504, 2071, 2721
TseFI	GTSAC	6 cut(s)	61, 75, 382, 1217, 1582, 2996
TseI	GCWGC	3 cut(s)	1145, 1796, 2732
Tsp45I	GTSAC	6 cut(s)	61, 75, 382, 1217, 1582, 2996
TspGWI	ACGGA	9 cut(s)	145, 370, 561, 1209, 1570, 1664, 2894, 2894, 2984
TspRI	CASTG	4 cut(s)	1222, 1504, 2071, 2721
Tth111I	GACNNNGTC	2 cut(s)	2282, 2659
VpaK11BI	GGWCC	4 cut(s)	270, 1093, 1241, 2022
XapI	RAATTY	8 cut(s)	176, 275, 288, 467, 1667, 2006, 2042, 2520
XceI	RCATGY	2 cut(s)	1930, 2341
XcmI	CCANNNNNNNNNTGG	2 cut(s)	640, 3030
XhoI	CTCGAG	1 cut(s)	500
XmiI	GTMKAC	5 cut(s)	1875, 2244, 2316, 2534, 2663
XspI	CTAG	3 cut(s)	1136, 1199, 2240
ZrmI	AGTACT	1 cut(s)	1140
Zsp2I	ATGCAT	2 cut(s)	1738, 2804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.