Rmu_co7998078.1_g000001

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7998078.1
Physical Location & Seq
Forward (+)
5 .. 524
520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7998078.1_g000001.1.cds

Sequence Viewer

Length: 520 bp
atgcggaaagaattctgtattaacattgaggcagaacaacagagtctgaacatcacattcactcccagcaaagatggatacgcgtttatcaacgggattgaaattatctccatgcctgcctctctttactacactgcagcccaaggcgatgggcctagtctcatcggcaccgaaagccggtaccctgtgaaaaacaacaccgctctggagaagatctaccgaatcaacgtcggtggagactgggtctcaccgaataatgacaccggcatgtaccgcacctgggattcaagcgaccagacctacttattggattattcaagtttcgggtattattcaaattacgggtcgacaacatccagatttgaccttcagctcaaatttgcaagaatccctaactacactgccccggaagaggtttaccgaaccggccggtcaatgaagagctacaatctcacctgggggtttcctgtagatccacaatttaattacctggtgaggcttcatttttgtgagattgtac

Protein Analysis

173

Amino Acids

19.86

Weight (kDa)

5.16

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 2 cut(s) 167, 180
AccBSI CCGCTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 347
AccII CGCG 1 cut(s) 83
AciI CCGC 3 cut(s) 4, 201, 274
AclWI GGATC 1 cut(s) 467
AcoI YGGCCR 1 cut(s) 427
AcsI RAATTY 2 cut(s) 11, 377
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 3 cut(s) 182, 272, 519
AfiI CCNNNNNNNGG 3 cut(s) 177, 280, 412
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 4 cut(s) 101, 288, 318, 336
AjnI CCWGG 3 cut(s) 278, 455, 489
AluBI AGCT 2 cut(s) 373, 444
AluI AGCT 2 cut(s) 373, 444
Alw26I GTCTC 3 cut(s) 164, 231, 250
AlwI GGATC 1 cut(s) 467
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 2 cut(s) 152, 427
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 11, 377
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp700I GAANNNNTTC 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 3 cut(s) 240, 445, 505
BanI GGYRCC 2 cut(s) 167, 180
BbvI GCAGC 1 cut(s) 149
BccI CCATC 2 cut(s) 68, 143
BciT130I CCWGG 3 cut(s) 280, 457, 491
BciVI GTATCC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 3 cut(s) 164, 231, 250
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 135, 468
BfuI GTATCC 1 cut(s) 71
BglII AGATCT 1 cut(s) 213
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 4 cut(s) 280, 407, 457, 491
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 169, 182
BmrFI CCNGG 4 cut(s) 280, 407, 457, 491
BmrI ACTGGG 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 250
BsaJI CCNNGG 4 cut(s) 142, 279, 405, 456
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 280, 412
Bse118I RCCGGY 4 cut(s) 177, 263, 425, 429
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 3 cut(s) 280, 457, 491
BseDI CCNNGG 4 cut(s) 142, 279, 405, 456
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 3 cut(s) 177, 280, 412
BseNI ACTGG 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 427
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 2 cut(s) 154, 429
BshNI GGYRCC 2 cut(s) 167, 180
BsiEI CGRYCG 1 cut(s) 430
BsiSI CCGG 5 cut(s) 178, 264, 407, 426, 430
BslI CCNNNNNNNGG 3 cut(s) 177, 280, 412
BsmAI GTCTC 3 cut(s) 164, 231, 250
BsnI GGCC 2 cut(s) 154, 429
Bso31I GGTCTC 1 cut(s) 250
Bsp143I GATC 2 cut(s) 213, 472
BspACI CCGC 3 cut(s) 4, 201, 274
BspANI GGCC 2 cut(s) 154, 429
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 169, 182
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 1 cut(s) 467
BspQI GCTCTTC 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 167, 180
BspTNI GGTCTC 1 cut(s) 250
BsrBI CCGCTC 1 cut(s) 203
BsrFI RCCGGY 4 cut(s) 177, 263, 425, 429
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 4 cut(s) 177, 263, 425, 429
BssECI CCNNGG 4 cut(s) 142, 279, 405, 456
BssMI GATC 2 cut(s) 213, 472
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 3 cut(s) 280, 457, 491
Bst6I CTCTTC 2 cut(s) 405, 434
BstC8I GCNNGC 1 cut(s) 117
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 2 cut(s) 216, 475
BstMAI GTCTC 3 cut(s) 164, 231, 250
BstMBI GATC 2 cut(s) 213, 472
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 2 cut(s) 174, 273
BstNI CCWGG 3 cut(s) 280, 457, 491
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 4 cut(s) 278, 405, 455, 489
BstSFI CTRYAG 2 cut(s) 135, 468
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 149
BstX2I RGATCY 2 cut(s) 213, 472
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 2 cut(s) 213, 472
BstZI CGGCCG 1 cut(s) 427
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 154, 429
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 353
BtsI GCAGTG 2 cut(s) 132, 399
BtsIMutI CAGTG 2 cut(s) 132, 399
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 46
Cfr10I RCCGGY 4 cut(s) 177, 263, 425, 429
Cfr13I GGNCC 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 489
Csp6I GTAC 3 cut(s) 181, 271, 518
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 2 cut(s) 112, 268
CviJI RGCY 7 cut(s) 140, 154, 177, 373, 429, 444, 499
CviKI_1 RGCY 7 cut(s) 140, 154, 177, 373, 429, 444, 499
CviQI GTAC 3 cut(s) 181, 271, 518
DpnI GATC 2 cut(s) 215, 474
DpnII GATC 2 cut(s) 213, 472
EaeI YGGCCR 1 cut(s) 427
EagI CGGCCG 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 405, 434
EarI CTCTTC 2 cut(s) 405, 434
EclXI CGGCCG 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 250
Eco52I CGGCCG 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 3 cut(s) 278, 455, 489
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 115, 271
FaiI YATR 2 cut(s) 113, 269
FatI CATG 2 cut(s) 111, 267
FblI GTMKAC 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 154, 429
HapII CCGG 5 cut(s) 178, 264, 407, 426, 430
Hin1II CATG 2 cut(s) 115, 271
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HinfI GANTC 4 cut(s) 43, 222, 284, 387
HpaII CCGG 5 cut(s) 178, 264, 407, 426, 430
HphI GGTGA 3 cut(s) 240, 445, 505
Hpy166II GTNNAC 2 cut(s) 348, 418
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 2 cut(s) 206, 357
Hpy8I GTNNAC 2 cut(s) 348, 418
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 137, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 273
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 2 cut(s) 115, 271
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 213, 472
LguI GCTCTTC 1 cut(s) 434
Lsp1109I GCAGC 1 cut(s) 149
MabI ACCWGGT 1 cut(s) 489
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 228
MalI GATC 2 cut(s) 215, 474
MbiI CCGCTC 1 cut(s) 203
MboI GATC 2 cut(s) 213, 472
MboII GAAGA 3 cut(s) 223, 422, 451
MflI RGATCY 2 cut(s) 213, 472
MluCI AATT 6 cut(s) 11, 102, 337, 377, 479, 484
MluI ACGCGT 1 cut(s) 81
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 4 cut(s) 22, 130, 406, 489
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 2 cut(s) 21, 483
MslI CAYNNNNRTG 2 cut(s) 266, 507
MspI CCGG 5 cut(s) 178, 264, 407, 426, 430
MspR9I CCNGG 4 cut(s) 280, 407, 457, 491
MvaI CCWGG 3 cut(s) 280, 457, 491
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 174, 273
NciI CCSGG 1 cut(s) 407
NdeII GATC 2 cut(s) 213, 472
NlaIII CATG 2 cut(s) 115, 271
NlaIV GGNNCC 2 cut(s) 169, 182
NspI RCATGY 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 434
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 222, 284, 387
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 278, 455, 489
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 3 cut(s) 278, 455, 489
PspN4I GGNNCC 2 cut(s) 169, 182
PspPI GGNCC 1 cut(s) 152
PstI CTGCAG 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 213, 472
PsyI GACNNNGTC 1 cut(s) 242
RsaI GTAC 3 cut(s) 182, 272, 519
RsaNI GTAC 3 cut(s) 181, 271, 518
RseI CAYNNNNRTG 2 cut(s) 266, 507
SalI GTCGAC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 434
SaqAI TTAA 2 cut(s) 21, 483
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 213, 472
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 4 cut(s) 280, 407, 457, 491
SetI ASST 9 cut(s) 231, 281, 302, 369, 375, 417, 446, 458, 492
SexAI ACCWGGT 1 cut(s) 489
SfcI CTRYAG 2 cut(s) 135, 468
SmiMI CAYNNNNRTG 2 cut(s) 266, 507
Sse9I AATT 6 cut(s) 11, 102, 337, 377, 479, 484
SsiI CCGC 3 cut(s) 4, 201, 274
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 4 cut(s) 278, 405, 455, 489
StyI CCWWGG 1 cut(s) 142
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 347
TasI AATT 6 cut(s) 11, 102, 337, 377, 479, 484
TfiI GAWTC 3 cut(s) 222, 284, 387
Tru1I TTAA 2 cut(s) 21, 483
Tru9I TTAA 2 cut(s) 21, 483
TscAI CASTG 2 cut(s) 139, 406
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 452, 491
TspRI CASTG 2 cut(s) 139, 406
Tth111I GACNNNGTC 1 cut(s) 242
XapI RAATTY 2 cut(s) 11, 377
XceI RCATGY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.