Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

60205959 .. 60209890

Gene Structure 3932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGTTGCATGGATGATAATGGGATCAATCGACCATCAATGGACGATGTTGTGAGAGAGCTTCAATTTGCATTGAAGATGCAACAAAACAACGAGGACTATACTGATCGCATTGAAATGACAGTTCAAGATAGGATTGCATTGATCAAGGACAATGAAGGGTCTTGTTCTAGTGAGCAAAGTAGTGGGGCGAACGAATCCGTCCAAGGGTTGACTGGCACAATCTTCTCCGAGATCATTGATCCGGCGATGACTAAAGGGTACCGCCGACTAGTCATCGCATGCCATTTGGAGGACATATCTTTACAATATTCTCGTTTTCGTAACCAAGATTGGCATGAAATTAGTAATATCCTCGAGCTGATTGGAAACCTTCATGTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

128

Amino Acids

14.67

Weight (kDa)

4.76

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	261
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	2 cut(s)	32, 236
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	207, 292
AgsI	TTSAA	4 cut(s)	65, 76, 116, 128
AhlI	ACTAGT	1 cut(s)	271
AluBI	AGCT	2 cut(s)	61, 361
AluI	AGCT	2 cut(s)	61, 361
AlwI	GGATC	2 cut(s)	32, 236
Ama87I	CYCGRG	1 cut(s)	356
Asp718I	GGTACC	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	261
BccI	CCATC	1 cut(s)	43
BclI	TGATCA	1 cut(s)	144
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	2 cut(s)	171, 272
BmeT110I	CYCGRG	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 292
Bse1I	ACTGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	2 cut(s)	207, 292
BseNI	ACTGG	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	207, 292
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	24, 106, 144, 234, 241
BspACI	CCGC	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	32, 236
BspT107I	GGYRCC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	5 cut(s)	24, 106, 144, 234, 241
BssT1I	CCWWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	5 cut(s)	27, 109, 147, 237, 244
BstMBI	GATC	5 cut(s)	24, 106, 144, 234, 241
BstNSI	RCATGY	1 cut(s)	285
BtgZI	GCGATG	2 cut(s)	262, 263
BtsCI	GGATG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	4 cut(s)	10, 282, 338, 377
CviJI	RGCY	2 cut(s)	61, 361
CviKI_1	RGCY	2 cut(s)	61, 361
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	5 cut(s)	26, 108, 146, 236, 243
DpnII	GATC	5 cut(s)	24, 106, 144, 234, 241
Eco130I	CCWWGG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	4 cut(s)	13, 285, 341, 380
FaiI	YATR	6 cut(s)	11, 102, 283, 299, 339, 378
FatI	CATG	4 cut(s)	9, 281, 337, 376
FbaI	TGATCA	1 cut(s)	144
FokI	GGATG	1 cut(s)	26
FspBI	CTAG	2 cut(s)	171, 272
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	4 cut(s)	13, 285, 341, 380
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	152, 383
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	9, 71, 82, 140
Hsp92II	CATG	4 cut(s)	13, 285, 341, 380
KpnI	GGTACC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	5 cut(s)	24, 106, 144, 234, 241
LpnPI	CCDG	2 cut(s)	201, 258
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	171, 272
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	5 cut(s)	26, 108, 146, 236, 243
MboI	GATC	5 cut(s)	24, 106, 144, 234, 241
MboII	GAAGA	2 cut(s)	88, 217
MluCI	AATT	2 cut(s)	65, 342
MnlI	CCTC	3 cut(s)	88, 286, 365
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	245
NdeII	GATC	5 cut(s)	24, 106, 144, 234, 241
NlaIII	CATG	4 cut(s)	13, 285, 341, 380
NlaIV	GGNNCC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	263
PspXI	VCTCGAGB	1 cut(s)	356
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	381
Sau3AI	GATC	5 cut(s)	24, 106, 144, 234, 241
SetI	ASST	3 cut(s)	63, 363, 375
SfaNI	GCATC	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	356
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	271
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	2 cut(s)	65, 342
SsiI	CCGC	1 cut(s)	265
SspI	AATATT	1 cut(s)	311
SspMI	CTAG	2 cut(s)	171, 272
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	31, 357
TasI	AATT	2 cut(s)	65, 342
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TspDTI	ATGAA	3 cut(s)	171, 354, 365
TspGWI	ACGGA	1 cut(s)	190
XceI	RCATGY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	356
XspI	CTAG	2 cut(s)	171, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.