Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

8103709 .. 8106351

Gene Structure 2643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGAAACCAATCATCACTCCTCTCTACCTCTACTTGTTCTTCCACATCCTCACACTCTTCGTCACCGGTCAGCCGCCACCATACACTCCGGTCGACAATATCATCCTCGCCTGTGGCAATTCCGGCCAACAAAACTCCAATGACAACAGAAAGTGGAGTGGAGATATCGACTCAAAATTCACCCCAATAGGTAACGCATCCCAATCCATAGATGCACCCCGGTCGGACACAGCCAGCCAAGTCCCTTACACCAAAGCTCGGCTCTCTCGCTCCGAATTCACTTACAAAATTCCCCTCTCTCCCGGCCAAAAATTCATCCGCTTGCATTTCAATCCAGATACATACACCCCGGACTTCCAACGCTCCAATTCCCTCTTCTCCGTCACCGCCGCCGGCTTCACTCTCCTCAAAGACTTCAGCGCCTCCGTCACCGCCGACGCTTTCCGCGAGTCCCCGCTGGTCAGAGAATTCTGTGTAAACATCGAGACAGGACAGAAACTCGAGATCACCTTCACACCAAGCAAAGATGCGTACGCTTTCATCAACGGAATCGAAATCGTGTCCATGCCCACCGGTTTTTACTATACTTCAGGCCATTTCATCGACACCAGCGCAAGCACATATCCGATCGGAAACAACACAGCTCTGGAGATGGTGTACCGAATCAACGTCGGCGGAGGCCCCATCTCGCCGAACGCAGACACCGGAATGTACCGGACTTGGGAAACTGACGACAAAATCTATTTGGATAATATAAGTAAAAAAGAAAGCATGCTACCACAGAACAATACAATCGAGCTCAATTTCGTCAAAGTTCCAGAATACTCTGCCCCAAAAGCAGTTTACACAACAGGTCGGTCAATGGGGATGAACAAAACCATCAACAAGAGCTATAACCTCACATGGGTATTTCCCTTAGATCCCAAGTTTTATTACCTGGTGAGACTCCATTTCTGTGAGTTTGAATCTGATATTACCAAGTACGGAGATCGATCGTTTCAAATCTTCATGGCCAATCAAACCGCAGAAGAACTTGCAGATGTCATCGGATGGAGTGGAGCAAATGGGAATCCAGTTTACAGAGACTACGTTGTGGGAATGTTCATGTCTCCGGTAGGAAGCCAGAAGAAAGTTAACCTCTTTCTAGTACTCGCAGCGCTACAGAGAGATTCGTATACTACTTACAACGATGCCATCTTGAACGGGCTAGAAATCTTCAAGCTCAGCAACTCGAGTGGGAGTCTTGCCGGACCCAACCCCGACCCACCTCCGGTGAACGCACCAAAGATACTCCCGAAGAGCCCCAGTAAGAAGAAGTCTACTCCTATGGCAGCTATTATTGCAGGCGTAGTTTCCGGGTTACTTATGCTCTCTGTGCTCGGATTTTTTGTTTTCCGGCGAGGGAGAAAGGCCAAGGACTATAGCTCAAGTCAAGTCAAGTGGGGTATGCTTTCTTTTTCAACGACTACTAAGTCCTCCAAGTCCACCACGTCTTACGGTTCATCTCTGCCGTCCGAGCTGTGTCATCACTTTTCATTGGCGGAGATCAGAGCAGCCACGCAAAACTTTGACGATTCGAACGTTATTGGGCGTGGCGGGTTTGGTAACGTGTACAAAGGTACCATCAACGGTGCGTCCACACCCTTTGCGATCAAACGGCTGAAAGCGGAGTCGTCACAGGGTGCCCTTGAGTTCAAGACGGAGATCGAATTGCTCTCCCAACTCCGTCACGTCCATCTCGTGTCTCTGGTCGGGTACTGTGATGACAACGGTGAGATGATTTTGGTGTATGACTATATGGAAAATGGGACCCTACGCAATCATTTGTACAACTCCGAAAATCCACCTCTTCCTTGGGAGCAAAGGCTTCAAGTTTGTATTGGTGCGGCGCGTGGGTTGCACTACCTTCACACTGGTGTCAAGTGTATGATCATTCACCGAGACGTGAAGAGCACGAACATCTTGTTGGACGATAAATGGGTGGCCAAGGTCGCTGATTTCGGGTTGTCGAAAATGGGCACGACCACCATGTCTAAGACCCACATTAGCACCATGGTCAAGGGTAGTTTCGGCTATCTCGACCCAGAGTACTACCGTCGTCAACAGTTGACTGAGAAGTCTGATGTGTACTCGTTCGGAGTAGTATTGTGTGAGGTGTTGTGTGCTAGGCCGGCTTTGATCCGTACAGCGGACAAGAAGCAAATGAACCTAGCTGCATGGTTTAAGACCTGTCATGGAAACGGAACGCTTGACCAAATCATTGACTCGAATTTGAGGGGTAAGATTGTAAATGAGTGCTTGGACAAGTTTATTGAAATTGCAATTAGTTGTATGCATGATAATGGGAGTGAAAGACCGTCCATGAATGATGTTATATGGGCGCTTGAGTGTGCATTAAAACTTCAACAGACCGCAGAGGGTTCGGATTTGGATTTCAATGCCGGAAAGAAGGTTGAAGATGAGGCGTCAATGCTGAATGATAGTGATGCAGGGTTTAGTGGCACATGGGGAGACTCGTCAGGTTCCAAGAATAGCAGGGTGACCAAAACTAGTAGTAGTTACCAAAATTCTAGTGCCAGTGATTCCATTAAAGGGTTGTCAGGTACAGTCTTCTCTGAGATCTACGATCCCAATGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

880

Amino Acids

97.36

Weight (kDa)

7.51

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	37 - 407	1.4e-30	Malectin-like domain
Pkinase	PF00069	525 - 791	4.3e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	527 - 792	1e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1471, 2029, 2116
Acc65I	GGTACC	1 cut(s)	1619
AccB1I	GGYRCC	2 cut(s)	1619, 1682
AccI	GTMKAC	3 cut(s)	93, 1175, 1319
AccII	CGCG	2 cut(s)	447, 1891
AclI	AACGTT	1 cut(s)	1581
AclWI	GGATC	3 cut(s)	914, 2173, 2621
AcoI	YGGCCR	4 cut(s)	124, 304, 1011, 1983
AcsI	RAATTY	7 cut(s)	176, 275, 288, 311, 467, 2269, 2566
AcuI	CTGAAG	2 cut(s)	400, 573
AcyI	GRCGYC	1 cut(s)	2465
AdeI	CACNNNGTG	1 cut(s)	1682
AfeI	AGCGCT	1 cut(s)	1158
AfiI	CCNNNNNNNGG	6 cut(s)	258, 721, 904, 1270, 2188, 2592
AflIII	ACRYGT	1 cut(s)	1608
AgeI	ACCGGT	2 cut(s)	65, 572
AhlI	ACTAGT	1 cut(s)	2549
AjiI	CACGTC	3 cut(s)	1491, 1732, 1945
AjnI	CCWGG	1 cut(s)	936
AjuI	GAANNNNNNNTTGG	4 cut(s)	359, 391, 1949, 1981
AleI	CACNNNNGTG	1 cut(s)	1914
AluBI	AGCT	9 cut(s)	257, 644, 799, 891, 1222, 1334, 1425, 1519, 2213
AluI	AGCT	9 cut(s)	257, 644, 799, 891, 1222, 1334, 1425, 1519, 2213
Alw21I	GWGCWC	3 cut(s)	801, 1380, 1955
Alw26I	GTCTC	7 cut(s)	479, 937, 1077, 1113, 1749, 1935, 2505
AlwI	GGATC	3 cut(s)	914, 2173, 2621
Ama87I	CYCGRG	2 cut(s)	500, 1231
Aor51HI	AGCGCT	1 cut(s)	1158
AoxI	GGCC	8 cut(s)	124, 304, 592, 679, 1011, 1410, 1983, 2168
ApeKI	GCWGC	4 cut(s)	1154, 1331, 1553, 2213
ApoI	RAATTY	7 cut(s)	176, 275, 288, 311, 467, 2269, 2566
AsiGI	ACCGGT	2 cut(s)	65, 572
Asp718I	GGTACC	1 cut(s)	1619
AspLEI	GCGC	5 cut(s)	422, 614, 1159, 1891, 2383
AspS9I	GGNCC	3 cut(s)	680, 1250, 1809
AsuC2I	CCSGG	4 cut(s)	220, 303, 350, 1357
AsuII	TTCGAA	1 cut(s)	1577
AvaI	CYCGRG	2 cut(s)	500, 1231
AvaII	GGWCC	2 cut(s)	1250, 1809
BaeGI	GKGCMC	2 cut(s)	1687, 2021
BaeI	ACNNNNGTAYC	2 cut(s)	1603, 1636
BalI	TGGCCA	2 cut(s)	1013, 1985
BanI	GGYRCC	2 cut(s)	1619, 1682
BanII	GRGCYC	2 cut(s)	801, 1304
BauI	CACGAG	1 cut(s)	1739
BbsI	GAAGAC	1 cut(s)	2602
Bbv12I	GWGCWC	3 cut(s)	801, 1380, 1955
BbvI	GCAGC	4 cut(s)	1166, 1343, 1565, 2200
BccI	CCATC	7 cut(s)	646, 692, 887, 1044, 1202, 1631, 1743
BceAI	ACGGC	2 cut(s)	1495, 1673
BcgI	CGANNNNNNTGC	4 cut(s)	204, 238, 2403, 2437
BciT130I	CCWGG	1 cut(s)	938
BclI	TGATCA	1 cut(s)	1929
BcnI	CCSGG	4 cut(s)	220, 303, 350, 1357
BcoDI	GTCTC	7 cut(s)	479, 937, 1077, 1113, 1749, 1935, 2505
BcuI	ACTAGT	1 cut(s)	2549
BfaI	CTAG	6 cut(s)	1145, 1208, 2166, 2210, 2550, 2571
BfmI	CTRYAG	2 cut(s)	1160, 1420
BfoI	RGCGCY	3 cut(s)	423, 1160, 2384
BglII	AGATCT	1 cut(s)	2619
BisI	GCNGC	7 cut(s)	74, 390, 1155, 1332, 1554, 1887, 2214
BlpI	GCTNAGC	1 cut(s)	1223
BlsI	GCNGC	7 cut(s)	75, 391, 1156, 1333, 1555, 1888, 2215
BmcAI	AGTACT	2 cut(s)	1149, 2090
Bme1390I	CCNGG	5 cut(s)	220, 303, 350, 938, 1357
Bme18I	GGWCC	2 cut(s)	1250, 1809
BmeT110I	CYCGRG	2 cut(s)	500, 1231
BmgBI	CACGTC	3 cut(s)	1491, 1732, 1945
BmgT120I	GGNCC	3 cut(s)	680, 1250, 1809
BmiI	GGNNCC	7 cut(s)	682, 1252, 1621, 1684, 1810, 1811, 2524
BmrFI	CCNGG	5 cut(s)	220, 303, 350, 938, 1357
BmrI	ACTGGG	1 cut(s)	1299
BmsI	GCATC	5 cut(s)	202, 206, 517, 1180, 2476
BmuI	ACTGGG	1 cut(s)	1299
BpiI	GAAGAC	1 cut(s)	2602
BpmI	CTGGAG	1 cut(s)	668
Bpu1102I	GCTNAGC	1 cut(s)	1223
Bpu14I	TTCGAA	1 cut(s)	1577
BpuEI	CTTGAG	3 cut(s)	1411, 1709, 2405
BpuMI	CCSGG	4 cut(s)	220, 303, 350, 1357
Bsa29I	ATCGAT	1 cut(s)	991
BsaHI	GRCGYC	1 cut(s)	2465
BsaJI	CCNNGG	6 cut(s)	218, 348, 1413, 1853, 1986, 2052
BsaWI	WCCGGW	7 cut(s)	65, 88, 572, 704, 714, 1111, 1270
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	6 cut(s)	258, 721, 904, 1270, 2188, 2592
Bse118I	RCCGGY	4 cut(s)	65, 392, 572, 2170
Bse1I	ACTGG	4 cut(s)	1073, 1305, 1918, 2577
BseBI	CCWGG	1 cut(s)	938
BseCI	ATCGAT	1 cut(s)	991
BseDI	CCNNGG	6 cut(s)	218, 348, 1413, 1853, 1986, 2052
BseGI	GGATG	6 cut(s)	45, 102, 197, 315, 873, 1055
BseLI	CCNNNNNNNGG	6 cut(s)	258, 721, 904, 1270, 2188, 2592
BseMII	CTCAG	3 cut(s)	1237, 2103, 2607
BseNI	ACTGG	4 cut(s)	1073, 1305, 1918, 2577
BseRI	GAGGAG	2 cut(s)	9, 395
BseSI	GKGCMC	2 cut(s)	1687, 2021
BseXI	GCAGC	4 cut(s)	1166, 1343, 1565, 2200
Bsh1236I	CGCG	2 cut(s)	447, 1891
Bsh1285I	CGRYCG	4 cut(s)	93, 224, 630, 995
BshFI	GGCC	8 cut(s)	126, 306, 594, 681, 1013, 1412, 1985, 2170
BshNI	GGYRCC	2 cut(s)	1619, 1682
BshTI	ACCGGT	2 cut(s)	65, 572
BshVI	ATCGAT	1 cut(s)	991
BsiEI	CGRYCG	4 cut(s)	93, 224, 630, 995
BsiHKAI	GWGCWC	3 cut(s)	801, 1380, 1955
BsiHKCI	CYCGRG	2 cut(s)	500, 1231
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	3 cut(s)	227, 436, 1822
BslI	CCNNNNNNNGG	6 cut(s)	258, 721, 904, 1270, 2188, 2592
BsmAI	GTCTC	7 cut(s)	479, 937, 1077, 1113, 1749, 1935, 2505
BsmBI	CGTCTC	1 cut(s)	1935
BsmFI	GGGAC	3 cut(s)	227, 436, 1822
BsnI	GGCC	8 cut(s)	126, 306, 594, 681, 1013, 1412, 1985, 2170
BsoBI	CYCGRG	2 cut(s)	500, 1231
Bsp119I	TTCGAA	1 cut(s)	1577
Bsp1286I	GDGCHC	6 cut(s)	801, 1304, 1380, 1687, 1955, 2021
Bsp1407I	TGTACA	2 cut(s)	1611, 1827
Bsp1720I	GCTNAGC	1 cut(s)	1223
Bsp19I	CCATGG	1 cut(s)	2052
BspANI	GGCC	8 cut(s)	126, 306, 594, 681, 1013, 1412, 1985, 2170
BspCNI	CTCAG	3 cut(s)	1236, 2104, 2608
BspDI	ATCGAT	1 cut(s)	991
BspFNI	CGCG	2 cut(s)	447, 1891
BspLI	GGNNCC	7 cut(s)	682, 1252, 1621, 1684, 1810, 1811, 2524
BspPI	GGATC	3 cut(s)	914, 2173, 2621
BspQI	GCTCTTC	2 cut(s)	1292, 1943
BspT104I	TTCGAA	1 cut(s)	1577
BspT107I	GGYRCC	2 cut(s)	1619, 1682
BsrFI	RCCGGY	4 cut(s)	65, 392, 572, 2170
BsrGI	TGTACA	2 cut(s)	1611, 1827
BsrI	ACTGG	4 cut(s)	1073, 1305, 1918, 2577
BssAI	RCCGGY	4 cut(s)	65, 392, 572, 2170
BssECI	CCNNGG	6 cut(s)	218, 348, 1413, 1853, 1986, 2052
BssNAI	GTATAC	1 cut(s)	1176
BssNI	GRCGYC	1 cut(s)	2465
BssSI	CACGAG	1 cut(s)	1739
BssT1I	CCWWGG	4 cut(s)	1413, 1853, 1986, 2052
Bst1107I	GTATAC	1 cut(s)	1176
Bst2BI	CACGAG	1 cut(s)	1739
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	8 cut(s)	1499, 1631, 1760, 1772, 2096, 2106, 2358, 2608
Bst6I	CTCTTC	5 cut(s)	62, 380, 1292, 1854, 1943
BstACI	GRCGYC	1 cut(s)	2465
BstAUI	TGTACA	2 cut(s)	1611, 1827
BstBI	TTCGAA	1 cut(s)	1577
BstC8I	GCNNGC	7 cut(s)	235, 323, 394, 616, 773, 1345, 2172
BstDEI	CTNAG	6 cut(s)	916, 1223, 1470, 2034, 2112, 2616
BstDSI	CCRYGG	1 cut(s)	2052
BstEII	GGTNACC	1 cut(s)	2539
BstF5I	GGATG	6 cut(s)	45, 102, 197, 315, 873, 1055
BstFNI	CGCG	2 cut(s)	447, 1891
BstH2I	RGCGCY	3 cut(s)	423, 1160, 2384
BstHHI	GCGC	5 cut(s)	422, 614, 1159, 1891, 2383
BstMAI	GTCTC	7 cut(s)	479, 937, 1077, 1113, 1749, 1935, 2505
BstMCI	CGRYCG	4 cut(s)	93, 224, 630, 995
BstMWI	GCNNNNNNNGC	8 cut(s)	123, 836, 1340, 1375, 1516, 1897, 1991, 2171
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	1 cut(s)	775
BstPI	GGTNACC	1 cut(s)	2539
BstSCI	CCNGG	5 cut(s)	218, 301, 348, 936, 1355
BstSFI	CTRYAG	2 cut(s)	1160, 1420
BstSLI	GKGCMC	2 cut(s)	1687, 2021
BstUI	CGCG	2 cut(s)	447, 1891
BstV1I	GCAGC	4 cut(s)	1166, 1343, 1565, 2200
BstV2I	GAAGAC	1 cut(s)	2602
BstX2I	RGATCY	2 cut(s)	919, 2619
BstYI	RGATCY	2 cut(s)	919, 2619
BstZ17I	GTATAC	1 cut(s)	1176
Bsu15I	ATCGAT	1 cut(s)	991
BsuRI	GGCC	8 cut(s)	126, 306, 594, 681, 1013, 1412, 1985, 2170
BsuTUI	ATCGAT	1 cut(s)	991
BtgI	CCRYGG	1 cut(s)	2052
BtrI	CACGTC	3 cut(s)	1491, 1732, 1945
BtsCI	GGATG	6 cut(s)	45, 102, 197, 315, 873, 1055
BtsIMutI	CAGTG	2 cut(s)	1911, 2584
Cac8I	GCNNGC	7 cut(s)	235, 323, 394, 616, 773, 1345, 2172
CfoI	GCGC	5 cut(s)	422, 614, 1159, 1891, 2383
Cfr10I	RCCGGY	4 cut(s)	65, 392, 572, 2170
Cfr13I	GGNCC	3 cut(s)	680, 1250, 1809
ClaI	ATCGAT	1 cut(s)	991
CseI	GACGC	3 cut(s)	446, 1623, 2454
CsiI	ACCWGGT	1 cut(s)	936
CspAI	ACCGGT	2 cut(s)	65, 572
CspCI	CAANNNNNGTGG	6 cut(s)	1216, 1251, 1421, 1456, 1627, 1662
DdeI	CTNAG	6 cut(s)	916, 1223, 1470, 2034, 2112, 2616
DraIII	CACNNNGTG	1 cut(s)	1682
DrdI	GACNNNNNNGTC	3 cut(s)	1471, 2029, 2116
DseDI	GACNNNNNNGTC	3 cut(s)	1471, 2029, 2116
EaeI	YGGCCR	4 cut(s)	124, 304, 1011, 1983
Eam1104I	CTCTTC	5 cut(s)	62, 380, 1292, 1854, 1943
EarI	CTCTTC	5 cut(s)	62, 380, 1292, 1854, 1943
EciI	GGCGGA	2 cut(s)	690, 1556
Ecl136II	GAGCTC	1 cut(s)	799
Eco130I	CCWWGG	4 cut(s)	1413, 1853, 1986, 2052
Eco24I	GRGCYC	2 cut(s)	801, 1304
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	1250, 1809
Eco47III	AGCGCT	1 cut(s)	1158
Eco53kI	GAGCTC	1 cut(s)	799
Eco57I	CTGAAG	2 cut(s)	400, 573
Eco88I	CYCGRG	2 cut(s)	500, 1231
Eco91I	GGTNACC	1 cut(s)	2539
EcoICRI	GAGCTC	1 cut(s)	799
EcoO109I	RGGNCCY	2 cut(s)	680, 1809
EcoO65I	GGTNACC	1 cut(s)	2539
EcoRI	GAATTC	2 cut(s)	275, 467
EcoRII	CCWGG	1 cut(s)	936
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	4 cut(s)	1413, 1853, 1986, 2052
EcoT22I	ATGCAT	1 cut(s)	2337
EcoT38I	GRGCYC	2 cut(s)	801, 1304
ErhI	CCWWGG	4 cut(s)	1413, 1853, 1986, 2052
Esp3I	CGTCTC	1 cut(s)	1935
FaqI	GGGAC	3 cut(s)	227, 436, 1822
FauI	CCCGC	2 cut(s)	462, 1589
FbaI	TGATCA	1 cut(s)	1929
FblI	GTMKAC	3 cut(s)	93, 1175, 1319
Fnu4HI	GCNGC	7 cut(s)	74, 390, 1155, 1332, 1554, 1887, 2214
FokI	GGATG	6 cut(s)	32, 89, 184, 302, 880, 1062
FriOI	GRGCYC	2 cut(s)	801, 1304
Fsp4HI	GCNGC	7 cut(s)	74, 390, 1155, 1332, 1554, 1887, 2214
FspBI	CTAG	6 cut(s)	1145, 1208, 2166, 2210, 2550, 2571
GlaI	GCGC	5 cut(s)	421, 613, 1158, 1890, 2382
GluI	GCNGC	7 cut(s)	74, 390, 1155, 1332, 1554, 1887, 2214
GsuI	CTGGAG	1 cut(s)	668
HaeII	RGCGCY	3 cut(s)	423, 1160, 2384
HaeIII	GGCC	8 cut(s)	126, 306, 594, 681, 1013, 1412, 1985, 2170
HgaI	GACGC	3 cut(s)	446, 1623, 2454
HhaI	GCGC	5 cut(s)	422, 614, 1159, 1891, 2383
Hin1I	GRCGYC	1 cut(s)	2465
Hin6I	GCGC	5 cut(s)	420, 612, 1157, 1889, 2381
HinP1I	GCGC	5 cut(s)	420, 612, 1157, 1889, 2381
HincII	GTYRAC	4 cut(s)	94, 1135, 2102, 2109
HindII	GTYRAC	4 cut(s)	94, 1135, 2102, 2109
HpaI	GTTAAC	1 cut(s)	1135
Hpy188III	TCNNGA	9 cut(s)	335, 484, 502, 647, 818, 1198, 1294, 1696, 2078
Hpy99I	CGWCG	3 cut(s)	440, 674, 2100
HpyAV	CCTTC	3 cut(s)	520, 1916, 2443
HpyCH4III	ACNGT	8 cut(s)	1499, 1631, 1760, 1772, 2096, 2106, 2358, 2608
HpyCH4IV	ACGT	7 cut(s)	669, 1089, 1490, 1581, 1608, 1731, 1944
HpyF10VI	GCNNNNNNNGC	8 cut(s)	123, 836, 1340, 1375, 1516, 1897, 1991, 2171
HpyF3I	CTNAG	6 cut(s)	916, 1223, 1470, 2034, 2112, 2616
HpySE526I	ACGT	7 cut(s)	669, 1089, 1490, 1581, 1608, 1731, 1944
Hsp92I	GRCGYC	1 cut(s)	2465
HspAI	GCGC	5 cut(s)	420, 612, 1157, 1889, 2381
KflI	GGGWCCC	1 cut(s)	1809
KpnI	GGTACC	1 cut(s)	1623
KroI	GCCGGC	2 cut(s)	392, 2170
KroNI	GCCGGC	2 cut(s)	394, 2172
Ksp22I	TGATCA	1 cut(s)	1929
KspAI	GTTAAC	1 cut(s)	1135
LguI	GCTCTTC	2 cut(s)	1292, 1943
LmnI	GCTCC	4 cut(s)	275, 368, 1058, 1858
Lsp1109I	GCAGC	4 cut(s)	1166, 1343, 1565, 2200
LweI	GCATC	5 cut(s)	202, 206, 517, 1180, 2476
MabI	ACCWGGT	1 cut(s)	936
MaeI	CTAG	6 cut(s)	1145, 1208, 2166, 2210, 2550, 2571
MaeII	ACGT	7 cut(s)	669, 1089, 1490, 1581, 1608, 1731, 1944
MflI	RGATCY	2 cut(s)	919, 2619
MhlI	GDGCHC	6 cut(s)	801, 1304, 1380, 1687, 1955, 2021
MlsI	TGGCCA	2 cut(s)	1013, 1985
MluNI	TGGCCA	2 cut(s)	1013, 1985
MlyI	GAGTC	7 cut(s)	164, 458, 939, 1249, 1679, 2258, 2507
MmeI	TCCRAC	3 cut(s)	204, 382, 1947
Mox20I	TGGCCA	2 cut(s)	1013, 1985
Mph1103I	ATGCAT	1 cut(s)	2337
MroNI	GCCGGC	2 cut(s)	392, 2170
MscI	TGGCCA	2 cut(s)	1013, 1985
MseI	TTAA	4 cut(s)	1134, 2223, 2396, 2589
MslI	CAYNNNNRTG	4 cut(s)	707, 954, 1914, 2340
Msp20I	TGGCCA	2 cut(s)	1013, 1985
MspA1I	CMGCKG	2 cut(s)	457, 2189
MspR9I	CCNGG	5 cut(s)	220, 303, 350, 938, 1357
MvaI	CCWGG	1 cut(s)	938
MvnI	CGCG	2 cut(s)	447, 1891
MwoI	GCNNNNNNNGC	8 cut(s)	123, 836, 1340, 1375, 1516, 1897, 1991, 2171
NaeI	GCCGGC	2 cut(s)	394, 2172
NciI	CCSGG	4 cut(s)	220, 303, 350, 1357
NcoI	CCATGG	1 cut(s)	2052
NgoMIV	GCCGGC	2 cut(s)	392, 2170
NlaIV	GGNNCC	7 cut(s)	682, 1252, 1621, 1684, 1810, 1811, 2524
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	6 cut(s)	61, 382, 427, 1674, 1727, 2539
NsiI	ATGCAT	1 cut(s)	2337
NspI	RCATGY	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	1577
OliI	CACNNNNGTG	1 cut(s)	1914
PaeI	GCATGC	1 cut(s)	775
PaeR7I	CTCGAG	2 cut(s)	500, 1231
PciSI	GCTCTTC	2 cut(s)	1292, 1943
PcsI	WCGNNNNNNNCGW	4 cut(s)	444, 1578, 1737, 2076
PdiI	GCCGGC	2 cut(s)	394, 2172
PfeI	GAWTC	7 cut(s)	549, 663, 965, 1069, 1169, 1574, 2582
Pfl23II	CGTACG	1 cut(s)	531
PinAI	ACCGGT	2 cut(s)	65, 572
PkrI	GCNGC	7 cut(s)	75, 391, 1156, 1333, 1555, 1888, 2215
Ple19I	CGATCG	2 cut(s)	630, 995
PleI	GAGTC	7 cut(s)	164, 457, 939, 1248, 1678, 2258, 2507
PpsI	GAGTC	7 cut(s)	164, 457, 939, 1248, 1678, 2258, 2507
PpuMI	RGGWCCY	1 cut(s)	1809
Psp124BI	GAGCTC	1 cut(s)	801
Psp1406I	AACGTT	1 cut(s)	1581
Psp5II	RGGWCCY	1 cut(s)	1809
Psp6I	CCWGG	1 cut(s)	936
PspEI	GGTNACC	1 cut(s)	2539
PspGI	CCWGG	1 cut(s)	936
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	7 cut(s)	682, 1252, 1621, 1684, 1810, 1811, 2524
PspPI	GGNCC	3 cut(s)	680, 1250, 1809
PspPPI	RGGWCCY	1 cut(s)	1809
PspXI	VCTCGAGB	1 cut(s)	1231
PsuI	RGATCY	2 cut(s)	919, 2619
PvuI	CGATCG	2 cut(s)	630, 995
RseI	CAYNNNNRTG	4 cut(s)	707, 954, 1914, 2340
SacI	GAGCTC	1 cut(s)	801
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	2 cut(s)	1292, 1943
SaqAI	TTAA	4 cut(s)	1134, 2223, 2396, 2589
SatI	GCNGC	7 cut(s)	74, 390, 1155, 1332, 1554, 1887, 2214
Sau96I	GGNCC	3 cut(s)	680, 1250, 1809
ScaI	AGTACT	2 cut(s)	1149, 2090
SchI	GAGTC	7 cut(s)	164, 458, 939, 1249, 1679, 2258, 2507
ScrFI	CCNGG	5 cut(s)	220, 303, 350, 938, 1357
SduI	GDGCHC	6 cut(s)	801, 1304, 1380, 1687, 1955, 2021
SexAI	ACCWGGT	1 cut(s)	936
SfaNI	GCATC	5 cut(s)	202, 206, 517, 1180, 2476
SfcI	CTRYAG	2 cut(s)	1160, 1420
Sfr274I	CTCGAG	2 cut(s)	500, 1231
SfuI	TTCGAA	1 cut(s)	1577
SinI	GGWCC	2 cut(s)	1250, 1809
SlaI	CTCGAG	2 cut(s)	500, 1231
SmiMI	CAYNNNNRTG	4 cut(s)	707, 954, 1914, 2340
SmlI	CTYRAG	5 cut(s)	500, 1231, 1426, 1688, 2384
SmoI	CTYRAG	5 cut(s)	500, 1231, 1426, 1688, 2384
SpeI	ACTAGT	1 cut(s)	2549
SphI	GCATGC	1 cut(s)	775
SspMI	CTAG	6 cut(s)	1145, 1208, 2166, 2210, 2550, 2571
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	5 cut(s)	218, 301, 348, 936, 1355
StyI	CCWWGG	4 cut(s)	1413, 1853, 1986, 2052
TaaI	ACNGT	8 cut(s)	1499, 1631, 1760, 1772, 2096, 2106, 2358, 2608
TaiI	ACGT	7 cut(s)	672, 1092, 1493, 1584, 1611, 1734, 1947
TaqII	GACCGA	1 cut(s)	846
TatI	WGTACW	5 cut(s)	1147, 1611, 1827, 2088, 2127
TauI	GCSGC	3 cut(s)	76, 392, 1889
TfiI	GAWTC	7 cut(s)	549, 663, 965, 1069, 1169, 1574, 2582
Tru1I	TTAA	4 cut(s)	1134, 2223, 2396, 2589
Tru9I	TTAA	4 cut(s)	1134, 2223, 2396, 2589
TscAI	CASTG	2 cut(s)	1918, 2584
TseFI	GTSAC	6 cut(s)	61, 382, 427, 1674, 1727, 2539
TseI	GCWGC	4 cut(s)	1154, 1331, 1553, 2213
Tsp45I	GTSAC	6 cut(s)	61, 382, 427, 1674, 1727, 2539
TspGWI	ACGGA	8 cut(s)	370, 415, 561, 999, 1715, 1715, 2171, 2256
TspRI	CASTG	2 cut(s)	1918, 2584
VpaK11BI	GGWCC	2 cut(s)	1250, 1809
XapI	RAATTY	7 cut(s)	176, 275, 288, 311, 467, 2269, 2566
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1851
XhoI	CTCGAG	2 cut(s)	500, 1231
XmiI	GTMKAC	3 cut(s)	93, 1175, 1319
XspI	CTAG	6 cut(s)	1145, 1208, 2166, 2210, 2550, 2571
ZrmI	AGTACT	2 cut(s)	1149, 2090
Zsp2I	ATGCAT	1 cut(s)	2337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.