Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

21936515 .. 21939037

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2523 bp

ATGAAGTCAGTTCTCATCCCTCTCTACCTCTCTGTGTTTCAGTACATCATCGTCGAACGGCTGGCCGGTCAGTCGCCACCTATATACACTCCTACTGATAATATCACCCTTAACTGTGGTTCATCCGGTGACAGTGTCAGTGATTATGATTCTCGAATTTGGAGTGGAGATATCAACTCAAAGCTTTCCCCTATAGAAGTTGGTCGCACATCCCAAGCTTTGAAAGCAATACCATCGGACGCCTCGAGAGGTACCGTACGCCACACCCAAGTACCGTACACCACAGCACGGGTTTCTCACTCGGAATTCACTTATCGATTTCCCGTCAGTCCGGGCCAGAAGTTCATTCGCTTATACTTCTACCCAGCTACATACAACGCCAACTTCTCCCTCTCCGAGTCTCTTTTCTCTGTCAAGGTCGGTGTCTTCACTCTTCTCAAAGACTTTAACCCTTCTGCAAATGCCGATGCTGATGATTCTGAGACGATTTTCAAAGAATTTTGTACTAACGTTGAGCGAGAACAACAGATCCTTAACATCACATTCACTCCCAGCAAAAAGGCATATGCTTTCATCAACGGAATTGAAATATGGTCGATGCCAACAAATCTTTATTACTCTACTGCTAACTCTCTCAGCAGCAGAAACTCATATCCAGTCAAAAACAGCACAGCTCTAGAGATGCTATACCGAATCAACATTGGCGGAAGCATAGTTTGGTCCAAGGAAGACACCGGCTTGTACCGGACTTGGGATGCCACAGACCTCCTTTATTTGGATGATCTAAGTACAAGACTCAGTGTTCTTCAACAGAACAGGACTGCTGAACTCAAATTTATCAAAATACCAGAGTACATAGCCCCAAAAGTAGTTTACCAGACAGGTCGGTCAATGGGGATGAACAAAACCATCAACGAGAATTACAACCTCACCTGGTTATTTCCGGTAGACTCTAACTTCTCCTACCTGATTAGACTGCATTTTTGTGAGTTTGAGTCTGAAATTACCAAGAGCGGAAACCGGACGTTTTTAATTTACATAGCCAATCAAACTGCTGAACAAGGAGCAGACATAATTCAATGGAGTGGTGGAAATGGGATACCGATATACAGAGACTACACCTTGCTCATGTCTGACCCTGGAAGCCAGAAGAGAGTTAACCTCTCTATTGCGTTGCAAGTATCCCCACTAGATCAGTTGAGTACATATACCGATGCAATGATGAATGGGATCGAAATCTTCAAATTATTCAACCCAGATGGCCCTCAGAAACCCAACCCACCACCAGCGGAGACACCAAAACAGCAAACTTCACACTACAAGCGGACAACACAAGTACAAATCATCATTGCTGCTGTTGTGTCCAGCATACTAGTGTTTTTCGTCCTCGGATTTTTGGTCATCAAGCGACGATGGAAAGCTAAGGACACTGACTCCAGCCACAGGATAACGAGGTCAACCATGATCCCAGAGTCATCTTTACCATCTTATTTGTGTCGTTACTTTTCACTGGCAGAGATCAAGGCTGCCACCAAAAACTTCGATGATACTTCCATTATTGGAGCTGGAGGATTTGGCAACGTGTACAAAGGATGTATCGAAGGTGGAGTCACTCCAGTTGCAATCAAAAGACTGAAACCAGAGTCATCCCAGGGTGCCCACGAGTTTAAGACGGAAATCGAGATGCTCTCTCAACTCCGTCATCGTCATTTGGTTTCGCTCATTGGATATTGTGCTGATAAAGGTGAGATGATCTTAGTGTATGAGTATATGTCCCGTGGAACCCTTCGTGACCATCTCTACCACAATGCTAAACCGCCTCTTTCTTGGGAGCAACGGCTTCAGATTTGTATTGGCACAGCCCGTGGATTGCAATACCTCCACAGTGGTGCGAAGGGCACCATCATACACCGTGATGTGAAGAGCACAAACATCTTATTGGATGACAAATGGGTAGCCAAAGTTTCAGATTTTGGGTTGTCCAAGGGCACGACTAACATGTCCAAAACCCACATCAGCACGGTGGTGAAAGGTAGTTTTGGGTATCTGGACCCGGAGTACTACCGCCGACAACGTCTGACTGAGAAGTCAGACGTGTACTCACTTGGCGTAGTGTTGTTTGAGGTATTGTGTGCAAGGCCAGCAGTGATGCAGACAGAAGAGCTGAAGCAGGTGAACCTGGCTGAGTGGGCCAAGAGCTGTCATCAGAATGGGGAAATTGATCAAATCATTGATCCAAGTTTAAGAGGTAAGATCGCAGCCGAGTGCCTGAATAAGTTCACCGAAATAGCTATCAGTTGCATGCATGACGATGGAACAGAACGGCCGTCCATGACTGATGTTGTTAGGGGGCTTGAACTTGCATTGCCGCTTCAGCAATGTGCAGAAGGGAATACCAACTGCACTGAAAGGATTGTTGAAACTGAACCAAGCAGTAATGAGCAAAGCCTTGCCACCAACGATTCCATTAAATGTATATCAGCAACTATCTTCTCTGAGATAAACGACCCAAGTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

840

Amino Acids

94.19

Weight (kDa)

6.95

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	38 - 415	3.8e-29	Malectin-like domain
Malectin	PF11721	231 - 373	1.2e-07	Malectin domain
Pkinase	PF00069	516 - 782	1e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	519 - 784	2.1e-51	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2161
AasI	GACNNNNNNGTC	3 cut(s)	886, 1999, 2086
Acc36I	ACCTGC	1 cut(s)	2161
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	3 cut(s)	251, 1655, 1898
AccBSI	CCGCTC	1 cut(s)	1014
AccI	GTMKAC	1 cut(s)	948
AciI	CCGC	7 cut(s)	705, 1014, 1289, 1324, 1817, 2065, 2369
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	4 cut(s)	523, 1238, 1459, 2228
AcoI	YGGCCR	2 cut(s)	63, 2324
AcsI	RAATTY	4 cut(s)	156, 305, 497, 833
AcuI	CTGAAG	3 cut(s)	1826, 2186, 2357
AcyI	GRCGYC	1 cut(s)	240
AfiI	CCNNNNNNNGG	4 cut(s)	288, 751, 775, 1443
AflIII	ACRYGT	3 cut(s)	1581, 1998, 2094
AgsI	TTSAA	9 cut(s)	223, 493, 587, 809, 1079, 1243, 1252, 2357, 2420
AhlI	ACTAGT	1 cut(s)	1372
AjiI	CACGTC	1 cut(s)	2095
AjnI	CCWGG	4 cut(s)	932, 1138, 1650, 2178
AjuI	GAANNNNNNNTTGG	2 cut(s)	700, 732
AleI	CACNNNNGTG	2 cut(s)	1887, 2024
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	9 cut(s)	184, 218, 368, 674, 1421, 1565, 2164, 2199, 2291
AluI	AGCT	9 cut(s)	184, 218, 368, 674, 1421, 1565, 2164, 2199, 2291
Alw21I	GWGCWC	1 cut(s)	1928
Alw26I	GTCTC	4 cut(s)	405, 476, 1107, 1286
AlwI	GGATC	4 cut(s)	523, 1238, 1459, 2228
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	6 cut(s)	63, 334, 1261, 2138, 2190, 2324
ApeKI	GCWGC	4 cut(s)	639, 1352, 1526, 2258
ApoI	RAATTY	4 cut(s)	156, 305, 497, 833
ArsI	GACNNNNNNTTYG	4 cut(s)	966, 998, 1593, 1625
Asp700I	GAANNNNTTC	1 cut(s)	2276
Asp718I	GGTACC	1 cut(s)	251
AspS9I	GGNCC	5 cut(s)	334, 720, 1262, 2050, 2190
AsuC2I	CCSGG	2 cut(s)	333, 2054
AsuHPI	GGTGA	7 cut(s)	97, 140, 922, 1757, 2038, 2185, 2272
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	720, 2050
BaeGI	GKGCMC	3 cut(s)	1660, 1901, 1991
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanI	GGYRCC	3 cut(s)	251, 1655, 1898
BauI	CACGAG	1 cut(s)	1661
BbsI	GAAGAC	2 cut(s)	418, 735
Bbv12I	GWGCWC	1 cut(s)	1928
BbvI	GCAGC	4 cut(s)	651, 1339, 1513, 2270
BccI	CCATC	8 cut(s)	241, 917, 1253, 1407, 1492, 1803, 1910, 2306
BceAI	ACGGC	4 cut(s)	74, 1853, 2311, 2339
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	4 cut(s)	934, 1140, 1652, 2180
BciVI	GTATCC	2 cut(s)	1092, 1192
BclI	TGATCA	1 cut(s)	2221
BcnI	CCSGG	2 cut(s)	333, 2054
BcoDI	GTCTC	4 cut(s)	405, 476, 1107, 1286
BcuI	ACTAGT	1 cut(s)	1372
BfaI	CTAG	3 cut(s)	677, 1190, 1373
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	2161
BfuI	GTATCC	2 cut(s)	1092, 1192
BisI	GCNGC	5 cut(s)	640, 1353, 1527, 2259, 2369
BlsI	GCNGC	5 cut(s)	641, 1354, 1528, 2260, 2370
BmcAI	AGTACT	1 cut(s)	2060
Bme1390I	CCNGG	6 cut(s)	333, 934, 1140, 1652, 2054, 2180
Bme18I	GGWCC	2 cut(s)	720, 2050
BmeT110I	CYCGRG	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	2095
BmgT120I	GGNCC	5 cut(s)	334, 720, 1262, 2050, 2190
BmiI	GGNNCC	5 cut(s)	253, 1657, 1783, 1900, 2052
BmrFI	CCNGG	6 cut(s)	333, 934, 1140, 1652, 2054, 2180
BmsI	GCATC	7 cut(s)	457, 588, 672, 745, 1204, 1674, 2139
BpiI	GAAGAC	2 cut(s)	418, 735
BplI	GAGNNNNNCTC	4 cut(s)	1146, 1178, 1673, 1705
BpmI	CTGGAG	3 cut(s)	1420, 1587, 1599
Bpu10I	CCTNAGC	1 cut(s)	1422
BpuMI	CCSGG	2 cut(s)	333, 2054
Bsa29I	ATCGAT	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	1235
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	8 cut(s)	723, 1138, 1387, 1650, 1651, 1777, 1864, 1983
BsaWI	WCCGGW	4 cut(s)	125, 744, 943, 1020
BsaXI	ACNNNNNCTCC	4 cut(s)	532, 562, 1418, 1448
Bsc4I	CCNNNNNNNGG	4 cut(s)	288, 751, 775, 1443
Bse118I	RCCGGY	2 cut(s)	65, 734
Bse1I	ACTGG	3 cut(s)	656, 1515, 1616
Bse3DI	GCAATG	4 cut(s)	1224, 1347, 2363, 2384
Bse8I	GATNNNNATC	1 cut(s)	1235
BseBI	CCWGG	4 cut(s)	934, 1140, 1652, 2180
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	8 cut(s)	723, 1138, 1387, 1650, 1651, 1777, 1864, 1983
BseGI	GGATG	9 cut(s)	15, 122, 209, 760, 784, 903, 1598, 1646, 1948
BseJI	GATNNNNATC	1 cut(s)	1235
BseLI	CCNNNNNNNGG	4 cut(s)	288, 751, 775, 1443
BseMI	GCAATG	4 cut(s)	1224, 1347, 2363, 2384
BseMII	CTCAG	7 cut(s)	471, 649, 811, 1280, 2073, 2175, 2487
BseNI	ACTGG	3 cut(s)	656, 1515, 1616
BseSI	GKGCMC	3 cut(s)	1660, 1901, 1991
BseX3I	CGGCCG	1 cut(s)	2324
BseXI	GCAGC	4 cut(s)	651, 1339, 1513, 2270
BseYI	CCCAGC	2 cut(s)	364, 551
BsgI	GTGCAG	2 cut(s)	2386, 2403
Bsh1285I	CGRYCG	1 cut(s)	2327
BshFI	GGCC	6 cut(s)	65, 336, 1263, 2140, 2192, 2326
BshNI	GGYRCC	3 cut(s)	251, 1655, 1898
BshVI	ATCGAT	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	2327
BsiHKAI	GWGCWC	1 cut(s)	1928
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	8 cut(s)	66, 126, 332, 735, 745, 944, 1021, 2054
BsiWI	CGTACG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	1759
BslI	CCNNNNNNNGG	4 cut(s)	288, 751, 775, 1443
BsmAI	GTCTC	4 cut(s)	405, 476, 1107, 1286
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	1759
BsnI	GGCC	6 cut(s)	65, 336, 1263, 2140, 2192, 2326
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	4 cut(s)	1660, 1901, 1928, 1991
Bsp1407I	TGTACA	1 cut(s)	1584
BspACI	CCGC	7 cut(s)	705, 1014, 1289, 1324, 1817, 2065, 2369
BspANI	GGCC	6 cut(s)	65, 336, 1263, 2140, 2192, 2326
BspCNI	CTCAG	7 cut(s)	472, 648, 810, 1279, 2074, 2176, 2488
BspDI	ATCGAT	1 cut(s)	316
BspLI	GGNNCC	5 cut(s)	253, 1657, 1783, 1900, 2052
BspMI	ACCTGC	1 cut(s)	2161
BspPI	GGATC	4 cut(s)	523, 1238, 1459, 2228
BspQI	GCTCTTC	2 cut(s)	1916, 2154
BspT107I	GGYRCC	3 cut(s)	251, 1655, 1898
BsrBI	CCGCTC	1 cut(s)	1014
BsrDI	GCAATG	4 cut(s)	1224, 1347, 2363, 2384
BsrFI	RCCGGY	2 cut(s)	65, 734
BsrGI	TGTACA	1 cut(s)	1584
BsrI	ACTGG	3 cut(s)	656, 1515, 1616
BssAI	RCCGGY	2 cut(s)	65, 734
BssECI	CCNNGG	8 cut(s)	723, 1138, 1387, 1650, 1651, 1777, 1864, 1983
BssNI	GRCGYC	1 cut(s)	240
BssSI	CACGAG	1 cut(s)	1661
BssT1I	CCWWGG	2 cut(s)	723, 1983
Bst2BI	CACGAG	1 cut(s)	1661
Bst2UI	CCWGG	4 cut(s)	934, 1140, 1652, 2180
Bst4CI	ACNGT	7 cut(s)	116, 134, 256, 276, 1886, 1913, 2023
Bst6I	CTCTTC	4 cut(s)	438, 1145, 1916, 2154
BstACI	GRCGYC	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	1584
BstC8I	GCNNGC	3 cut(s)	63, 2142, 2303
BstDSI	CCRYGG	2 cut(s)	1777, 1864
BstF5I	GGATG	9 cut(s)	15, 122, 209, 760, 784, 903, 1598, 1646, 1948
BstMAI	GTCTC	4 cut(s)	405, 476, 1107, 1286
BstMCI	CGRYCG	1 cut(s)	2327
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 2141, 2189, 2374
BstNI	CCWGG	4 cut(s)	934, 1140, 1652, 2180
BstNSI	RCATGY	2 cut(s)	2002, 2305
BstSCI	CCNGG	6 cut(s)	331, 932, 1138, 1650, 2052, 2178
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	3 cut(s)	1660, 1901, 1991
BstV1I	GCAGC	4 cut(s)	651, 1339, 1513, 2270
BstV2I	GAAGAC	2 cut(s)	418, 735
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BstZI	CGGCCG	1 cut(s)	2324
Bsu15I	ATCGAT	1 cut(s)	316
BsuI	GTATCC	2 cut(s)	1092, 1192
BsuRI	GGCC	6 cut(s)	65, 336, 1263, 2140, 2192, 2326
BsuTUI	ATCGAT	1 cut(s)	316
BtgI	CCRYGG	2 cut(s)	1777, 1864
BtrI	CACGTC	1 cut(s)	2095
BtsCI	GGATG	9 cut(s)	15, 122, 209, 760, 784, 903, 1598, 1646, 1948
BtsI	GCAGTG	1 cut(s)	2151
BtsIMutI	CAGTG	8 cut(s)	139, 145, 805, 1428, 1508, 1891, 2151, 2403
BveI	ACCTGC	1 cut(s)	2161
Cac8I	GCNNGC	3 cut(s)	63, 2142, 2303
Cfr10I	RCCGGY	2 cut(s)	65, 734
Cfr13I	GGNCC	5 cut(s)	334, 720, 1262, 2050, 2190
ClaI	ATCGAT	1 cut(s)	316
CseI	GACGC	1 cut(s)	248
CsiI	ACCWGGT	1 cut(s)	932
CviAII	CATG	6 cut(s)	1129, 1462, 1999, 2302, 2306, 2332
DrdI	GACNNNNNNGTC	3 cut(s)	886, 1999, 2086
DseDI	GACNNNNNNGTC	3 cut(s)	886, 1999, 2086
EaeI	YGGCCR	2 cut(s)	63, 2324
EagI	CGGCCG	1 cut(s)	2324
Eam1104I	CTCTTC	4 cut(s)	438, 1145, 1916, 2154
EarI	CTCTTC	4 cut(s)	438, 1145, 1916, 2154
EciI	GGCGGA	1 cut(s)	720
EclXI	CGGCCG	1 cut(s)	2324
Eco130I	CCWWGG	2 cut(s)	723, 1983
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	720, 2050
Eco52I	CGGCCG	1 cut(s)	2324
Eco57I	CTGAAG	3 cut(s)	1826, 2186, 2357
Eco88I	CYCGRG	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	4 cut(s)	932, 1138, 1650, 2178
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	723, 1983
EcoT22I	ATGCAT	1 cut(s)	2307
ErhI	CCWWGG	2 cut(s)	723, 1983
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	6 cut(s)	1132, 1465, 2002, 2305, 2309, 2335
FaqI	GGGAC	1 cut(s)	1759
FatI	CATG	6 cut(s)	1128, 1461, 1998, 2301, 2305, 2331
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	2221
FblI	GTMKAC	1 cut(s)	948
Fnu4HI	GCNGC	5 cut(s)	640, 1353, 1527, 2259, 2369
FokI	GGATG	9 cut(s)	2, 109, 196, 767, 791, 910, 1605, 1633, 1955
Fsp4HI	GCNGC	5 cut(s)	640, 1353, 1527, 2259, 2369
FspBI	CTAG	3 cut(s)	677, 1190, 1373
GluI	GCNGC	5 cut(s)	640, 1353, 1527, 2259, 2369
GsaI	CCCAGC	2 cut(s)	368, 555
GsuI	CTGGAG	3 cut(s)	1420, 1587, 1599
HaeIII	GGCC	6 cut(s)	65, 336, 1263, 2140, 2192, 2326
HapII	CCGG	8 cut(s)	66, 126, 332, 735, 745, 944, 1021, 2054
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	1132, 1465, 2002, 2305, 2309, 2335
HincII	GTYRAC	2 cut(s)	1159, 1458
HindII	GTYRAC	2 cut(s)	1159, 1458
HindIII	AAGCTT	2 cut(s)	182, 216
HpaI	GTTAAC	1 cut(s)	1159
HpaII	CCGG	8 cut(s)	66, 126, 332, 735, 745, 944, 1021, 2054
HphI	GGTGA	7 cut(s)	97, 140, 922, 1757, 2038, 2185, 2272
Hpy166II	GTNNAC	9 cut(s)	279, 874, 949, 1159, 1458, 1585, 2098, 2176, 2280
Hpy188III	TCNNGA	6 cut(s)	153, 246, 677, 1681, 1790, 2048
Hpy8I	GTNNAC	9 cut(s)	279, 874, 949, 1159, 1458, 1585, 2098, 2176, 2280
Hpy99I	CGWCG	2 cut(s)	56, 1413
HpyAV	CCTTC	5 cut(s)	462, 1595, 1796, 1888, 2381
HpyCH4III	ACNGT	7 cut(s)	116, 134, 256, 276, 1886, 1913, 2023
HpyCH4IV	ACGT	5 cut(s)	510, 1025, 1581, 2074, 2094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 2141, 2189, 2374
HpySE526I	ACGT	5 cut(s)	510, 1025, 1581, 2074, 2094
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	1132, 1465, 2002, 2305, 2309, 2335
KpnI	GGTACC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	2221
KspAI	GTTAAC	1 cut(s)	1159
LguI	GCTCTTC	2 cut(s)	1916, 2154
LmnI	GCTCC	3 cut(s)	1064, 1562, 1831
Lsp1109I	GCAGC	4 cut(s)	651, 1339, 1513, 2270
LweI	GCATC	7 cut(s)	457, 588, 672, 745, 1204, 1674, 2139
MabI	ACCWGGT	1 cut(s)	932
MaeI	CTAG	3 cut(s)	677, 1190, 1373
MaeII	ACGT	5 cut(s)	510, 1025, 1581, 2074, 2094
MaeIII	GTNAC	4 cut(s)	128, 1499, 1609, 1790
MbiI	CCGCTC	1 cut(s)	1014
MboII	GAAGA	9 cut(s)	418, 425, 740, 797, 1162, 1231, 1933, 2171, 2482
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	4 cut(s)	1660, 1901, 1928, 1991
MlyI	GAGTC	8 cut(s)	407, 789, 944, 1004, 1427, 1481, 1617, 1652
Mph1103I	ATGCAT	1 cut(s)	2307
MroXI	GAANNNNTTC	1 cut(s)	2276
MseI	TTAA	8 cut(s)	111, 447, 534, 1031, 1158, 1668, 2243, 2469
MslI	CAYNNNNRTG	7 cut(s)	984, 1373, 1887, 1914, 2024, 2208, 2310
MspA1I	CMGCKG	1 cut(s)	1289
MspI	CCGG	8 cut(s)	66, 126, 332, 735, 745, 944, 1021, 2054
MspR9I	CCNGG	6 cut(s)	333, 934, 1140, 1652, 2054, 2180
MvaI	CCWGG	4 cut(s)	934, 1140, 1652, 2180
MwoI	GCNNNNNNNGC	4 cut(s)	224, 2141, 2189, 2374
NciI	CCSGG	2 cut(s)	333, 2054
NdeI	CATATG	1 cut(s)	565
NlaIII	CATG	6 cut(s)	1132, 1465, 2002, 2305, 2309, 2335
NlaIV	GGNNCC	5 cut(s)	253, 1657, 1783, 1900, 2052
NmeAIII	GCCGAG	1 cut(s)	2287
NmuCI	GTSAC	3 cut(s)	128, 1609, 1790
NsiI	ATGCAT	1 cut(s)	2307
NspI	RCATGY	2 cut(s)	2002, 2305
OliI	CACNNNNGTG	2 cut(s)	1887, 2024
PaeI	GCATGC	1 cut(s)	2305
PaeR7I	CTCGAG	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	2161
PasI	CCCWGGG	1 cut(s)	1651
PciI	ACATGT	1 cut(s)	1998
PciSI	GCTCTTC	2 cut(s)	1916, 2154
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	2276
PfeI	GAWTC	4 cut(s)	149, 476, 693, 2462
Pfl23II	CGTACG	1 cut(s)	256
PflFI	GACNNNGTC	2 cut(s)	134, 2073
PkrI	GCNGC	5 cut(s)	641, 1354, 1528, 2260, 2370
PleI	GAGTC	8 cut(s)	406, 789, 944, 1003, 1427, 1480, 1616, 1651
PpsI	GAGTC	8 cut(s)	406, 789, 944, 1003, 1427, 1480, 1616, 1651
PscI	ACATGT	1 cut(s)	1998
Psp1406I	AACGTT	1 cut(s)	510
Psp6I	CCWGG	4 cut(s)	932, 1138, 1650, 2178
PspFI	CCCAGC	2 cut(s)	364, 551
PspGI	CCWGG	4 cut(s)	932, 1138, 1650, 2178
PspLI	CGTACG	1 cut(s)	256
PspN4I	GGNNCC	5 cut(s)	253, 1657, 1783, 1900, 2052
PspPI	GGNCC	5 cut(s)	334, 720, 1262, 2050, 2190
PsuI	RGATCY	1 cut(s)	528
PsyI	GACNNNGTC	2 cut(s)	134, 2073
RseI	CAYNNNNRTG	7 cut(s)	984, 1373, 1887, 1914, 2024, 2208, 2310
SapI	GCTCTTC	2 cut(s)	1916, 2154
SaqAI	TTAA	8 cut(s)	111, 447, 534, 1031, 1158, 1668, 2243, 2469
SatI	GCNGC	5 cut(s)	640, 1353, 1527, 2259, 2369
Sau96I	GGNCC	5 cut(s)	334, 720, 1262, 2050, 2190
ScaI	AGTACT	1 cut(s)	2060
SchI	GAGTC	8 cut(s)	407, 789, 944, 1004, 1427, 1481, 1617, 1652
ScrFI	CCNGG	6 cut(s)	333, 934, 1140, 1652, 2054, 2180
SduI	GDGCHC	4 cut(s)	1660, 1901, 1928, 1991
SexAI	ACCWGGT	1 cut(s)	932
SfaNI	GCATC	7 cut(s)	457, 588, 672, 745, 1204, 1674, 2139
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	720, 2050
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	7 cut(s)	984, 1373, 1887, 1914, 2024, 2208, 2310
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SpeI	ACTAGT	1 cut(s)	1372
SphI	GCATGC	1 cut(s)	2305
SsiI	CCGC	7 cut(s)	705, 1014, 1289, 1324, 1817, 2065, 2369
SspMI	CTAG	3 cut(s)	677, 1190, 1373
StyD4I	CCNGG	6 cut(s)	331, 932, 1138, 1650, 2052, 2178
StyI	CCWWGG	2 cut(s)	723, 1983
TaaI	ACNGT	7 cut(s)	116, 134, 256, 276, 1886, 1913, 2023
TaiI	ACGT	5 cut(s)	513, 1028, 1584, 2077, 2097
TaqI	TCGA	9 cut(s)	54, 154, 245, 316, 596, 1233, 1542, 1599, 1680
TaqII	GACCGA	1 cut(s)	876
TatI	WGTACW	9 cut(s)	42, 503, 788, 852, 1202, 1336, 1584, 2058, 2097
TauI	GCSGC	1 cut(s)	2371
TfiI	GAWTC	4 cut(s)	149, 476, 693, 2462
Tru1I	TTAA	8 cut(s)	111, 447, 534, 1031, 1158, 1668, 2243, 2469
Tru9I	TTAA	8 cut(s)	111, 447, 534, 1031, 1158, 1668, 2243, 2469
TscAI	CASTG	8 cut(s)	139, 145, 805, 1435, 1515, 1891, 2151, 2410
TseFI	GTSAC	3 cut(s)	128, 1609, 1790
TseI	GCWGC	4 cut(s)	639, 1352, 1526, 2258
Tsp45I	GTSAC	3 cut(s)	128, 1609, 1790
TspDTI	ATGAA	6 cut(s)	17, 111, 334, 562, 914, 1238
TspGWI	ACGGA	3 cut(s)	594, 1688, 1688
TspRI	CASTG	8 cut(s)	139, 145, 805, 1435, 1515, 1891, 2151, 2410
Tth111I	GACNNNGTC	2 cut(s)	134, 2073
VpaK11BI	GGWCC	2 cut(s)	720, 2050
XapI	RAATTY	4 cut(s)	156, 305, 497, 833
XbaI	TCTAGA	1 cut(s)	676
XceI	RCATGY	2 cut(s)	2002, 2305
XhoI	CTCGAG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	948
XmnI	GAANNNNTTC	1 cut(s)	2276
XspI	CTAG	3 cut(s)	677, 1190, 1373
ZrmI	AGTACT	1 cut(s)	2060
Zsp2I	ATGCAT	1 cut(s)	2307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.