Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

8109116 .. 8111791

Gene Structure 2676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

ATGAAACCTATTTTCATTCCTCTTAACCTTTCCAGCTTGTTTTTACTCATCGTCACCCTGCTGGTGGCGGGAGAGTCCGCACCTATCTACTCTCCTACCTATAATATCACCCTTAAATGTGGCTTTTCCGGCGACAAGGTCAGTGATTATGATTCTCGAACTTGGACGGGAGACATCAACTCAAAGTTTTTCCCCGAAGCAGTTGGTAGCACATCCCGAGTCGAGAAAGCACCACCGTCGTCCTCCACGGGAAGCCTAGTGCCATTCACCACAGCTCGGCTTTCGCACTCGGAATTCACTTACAGATTTCCCGTGAGTCCAGGCCAGAAGTTCATTCGCTTGTATTTCTTCTCAGCTACATACAACGCGGACTTCGACCGCTCGAAATCACTTTTCTCTGTCAAAGCCGGTGGCTACACACTTCTCAAGGACTTCAACGCTTCTCTCGGTAGTAATTACGGAGGCTCTGAGACACTACTTAGAGAATTCTGCCTCAACTTTGAGCCAGATCAGCGGAGTCTGAACATCACATTCACTCCCAGCCAGGGTGGATACGCTTTTATTAACGGGATCGAAATCATGTCCATGCCAACCAATCTTTACCACTCGGCAGCCCAAGGCGATGGGGCTAGTCATCTTGGCAGCATCGGTAGCAGATATTACGTTGAAAACAACACCGCTTTGGAGATGATCTTCCGAATCAACGTTGCTGGCAGCCCATTATCTCCGAATGAAGACACCGGCATGTACCGCACCTGGTATCCAATCGACGAGTTCTACTTAGATGATCTAAGTAGAAATTTGAGCGTTGTACGAAGATATAATGCTCCTCTCAATTTTTCAATAATCCCTAACTACACGGCGCCCGAAGAGGTGTACCGAACGGGCCGGACAATGGGAGGGAACAGCACCATCAACAAGAGCTACAATCTCACCTGGGGATTCCCTGTAGATCCCAACTTTTCTTACCTGGTGAGGCTTCATTTCTGTGAGATTGATCCGAATATTACCGCGGCTAGAGATAGACGGTTTCAGATTTTCATAGCTAATTTAACAGCTGAACCGGAAGCAGACATAATCCACTGGACTACAACTGGAATCGGAAATGGGATTCCCATATATAGGGACTACTTTGTGCCGATGCTGAATCTTGGAACCCAGAAGAAAGGTTCTGTTAATCTCTTTGTTGCACTACAAGCATATCAAGATGATTACCAAACTCGATATAACGATGCGATCTTGAATGGCCTGGAAATCTTCAAACTCAATGACACAGACGGCAATCTCGGCGGAACCATCCCCGAGCTACCTCATATCCCGCCAAAGGTGACGTCGGAAAGCTCTAGAAACTCGAAGAAGAAGTCGACTCCTATGCTTGCTATCCTCGCCGGTGTAGTTTCGGCATTACTTGTTCTTTCCGTCGTCGGGGTTTTACTTTTCAGGCGCGGAAGAAAAGTCAAGGACTCCAACTCCAGCAAAGCAACAAAGTGGGGGCCATTTTCATTTTCGACGACCAAGTCAACCAAGTCTCGTGGCTCATCTCTACCGTCGGATCTGTGTCGTCACTTTTCACTGGCCGAGATCAAAGCCGCCACGCAAGACTTCAACGATATTTTCATTATTGGTGTCGGCGGATTTGGCAACGTGTACAAAGGGTATGTGGATGATGGGTCCATACCGGTGGCTATCAAACGGCTGAAACCCGAGTCATCACAGGGCGCCCGCGAGTTCAAGACCGAGATCGAGATGCTCTCCCAACTCCGCCACCTCCATTTGGTGTCTCTCGTTGGATATTGCACTGAGCAAGGTGAGATGATCCTGGTGTATGACTACATGGCACGTGGGACTCTCCGAGACCATTTGTACAAAACCGAAAATCCACCACTTCCGTGGGAACAACGGCTCCAAATTTGTATTGGTGCGGCGCGTGGATTGCACTACCTTCACACGGGGGCCAAGCGCATGATTATCCACCGCGACGTGAAGAGCACAAATATCTTATTGGATGAGAAATGGGTGGCGAAGGTTTCGGACTTTGGGTTGTCCAAAATGGGCACCACCACTTTGTCCAAGACTCACATCAGTACAGTGGTGAAGGGTAGTTTTGGATATCTCGACCCGGAGTACTATAGACGTCAACAGTTGACTGAGAAATCGGACGTTTACTCCTTTGGAGTAGTCTTGTGTGAGGTTTTGTGTGCGAGGCCGGCTCTGATACGTACGGCGGAGAAGAAGCAAATGAGTCTAGCTGAATGGACCAAGACTAATCATCGAAATGGCACGATTAATCATATCATTGATCCAAATCTAAGGGGAAAGATTGCAGCCACATGTCTTAATAAGTTCGTTGAGCTTGCGTTGAGTTGTATGAATGATAATGGAAGTGAGCGGCCATCGATGAATGACGTAGTATGGGGGCTTGAGTTTGCACTGCAGCTTCAGCAGAGTGCGGAAGCAATGTTACACTCCAACGTCGAAAAGGAAGGTGAAGATGAGGTTGCATTCATGAAAGATAATGATGCTGGGATGAGTTGTAGCTGGGAATACTCGTCGGATTCGAAGAACAGCAGAACGACCAAAACTAGTAGCGATGAGCAAATTTCTACCACCAATGAATCCATGAAAGGCATGTCTGGAACAATCTTCTCTGAGATCAAGGATCCCACTGTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

891

Amino Acids

99.28

Weight (kDa)

7.86

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	39 - 421	1.2e-27	Malectin-like domain
Pkinase	PF00069	539 - 803	3.7e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	541 - 804	1.2e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1516
AatII	GACGTC	2 cut(s)	1334, 2137
AccB1I	GGYRCC	3 cut(s)	862, 1718, 2054
AccBSI	CCGCTC	2 cut(s)	381, 2389
AccI	GTMKAC	1 cut(s)	1364
AccII	CGCG	6 cut(s)	368, 1013, 1446, 1725, 1927, 1977
AclI	AACGTT	1 cut(s)	705
AclWI	GGATC	8 cut(s)	578, 947, 992, 1560, 1810, 2294, 2654, 2667
AcoI	YGGCCR	2 cut(s)	1575, 2390
AcsI	RAATTY	5 cut(s)	293, 485, 799, 1908, 2598
AcuI	CTGAAG	1 cut(s)	2423
AcvI	CACGTG	1 cut(s)	1841
AcyI	GRCGYC	4 cut(s)	863, 1331, 1719, 2134
AfaI	GTAC	8 cut(s)	749, 813, 878, 1649, 1865, 2086, 2126, 2221
AfiI	CCNNNNNNNGG	9 cut(s)	64, 276, 545, 895, 1122, 1324, 1425, 1774, 1948
AflIII	ACRYGT	2 cut(s)	1644, 2330
AgeI	ACCGGT	1 cut(s)	1678
AgsI	TTSAA	7 cut(s)	436, 668, 843, 1243, 1261, 1606, 1732
AhlI	ACTAGT	1 cut(s)	2582
AjiI	CACGTC	1 cut(s)	1981
AjnI	CCWGG	7 cut(s)	319, 543, 755, 935, 969, 1248, 1818
AleI	CACNNNNGTG	1 cut(s)	1888
AloI	GAACNNNNNNTCC	2 cut(s)	1887, 1919
Alw21I	GWGCWC	1 cut(s)	1991
Alw26I	GTCTC	5 cut(s)	165, 464, 1533, 1785, 1848
AlwI	GGATC	8 cut(s)	578, 947, 992, 1560, 1810, 2294, 2654, 2667
Ama87I	CYCGRG	3 cut(s)	216, 1301, 1703
AoxI	GGCC	8 cut(s)	322, 886, 1246, 1493, 1575, 1953, 2204, 2390
ApeKI	GCWGC	5 cut(s)	611, 642, 714, 2324, 2434
ApoI	RAATTY	5 cut(s)	293, 485, 799, 1908, 2598
ArsI	GACNNNNNNTTYG	4 cut(s)	1316, 1346, 1348, 1378
AseI	ATTAAT	1 cut(s)	2286
AsiGI	ACCGGT	1 cut(s)	1678
AspLEI	GCGC	5 cut(s)	865, 1446, 1721, 1927, 1962
AspS9I	GGNCC	5 cut(s)	886, 1493, 1671, 1953, 2256
AsuC2I	CCSGG	1 cut(s)	2120
AsuHPI	GGTGA	9 cut(s)	46, 100, 259, 925, 985, 1339, 1820, 2104, 2498
AsuII	TTCGAA	1 cut(s)	2558
AvaI	CYCGRG	3 cut(s)	216, 1301, 1703
AvaII	GGWCC	2 cut(s)	1671, 2256
BaeGI	GKGCMC	1 cut(s)	2057
BamHI	GGATCC	1 cut(s)	2659
BanI	GGYRCC	3 cut(s)	862, 1718, 2054
BarI	GAAGNNNNNNTAC	2 cut(s)	2445, 2477
BauI	CACGAG	1 cut(s)	1530
BbrPI	CACGTG	1 cut(s)	1841
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	1991
BbvI	GCAGC	5 cut(s)	623, 654, 726, 2336, 2446
BccI	CCATC	5 cut(s)	617, 920, 1304, 1661, 2401
BceAI	ACGGC	5 cut(s)	876, 1294, 1709, 1916, 2238
BcgI	CGANNNNNNTGC	4 cut(s)	219, 253, 1354, 1388
BciT130I	CCWGG	7 cut(s)	321, 545, 757, 937, 971, 1250, 1820
BciVI	GTATCC	2 cut(s)	545, 771
BcnI	CCSGG	1 cut(s)	2120
BcoDI	GTCTC	5 cut(s)	165, 464, 1533, 1785, 1848
BcuI	ACTAGT	1 cut(s)	2582
BfaI	CTAG	6 cut(s)	257, 630, 1017, 1344, 2246, 2583
BfmI	CTRYAG	3 cut(s)	948, 2128, 2432
BfoI	RGCGCY	2 cut(s)	866, 1722
BfuI	GTATCC	2 cut(s)	545, 771
BisI	GCNGC	9 cut(s)	612, 643, 715, 1014, 1590, 1923, 2325, 2390, 2435
BlsI	GCNGC	9 cut(s)	613, 644, 716, 1015, 1591, 1924, 2326, 2391, 2436
BmcAI	AGTACT	1 cut(s)	2126
Bme1390I	CCNGG	8 cut(s)	321, 545, 757, 937, 971, 1250, 1820, 2120
Bme18I	GGWCC	2 cut(s)	1671, 2256
BmeT110I	CYCGRG	3 cut(s)	216, 1301, 1703
BmgBI	CACGTC	1 cut(s)	1981
BmgT120I	GGNCC	5 cut(s)	886, 1493, 1671, 1953, 2256
BmrFI	CCNGG	8 cut(s)	321, 545, 757, 937, 971, 1250, 1820, 2120
BmsI	GCATC	5 cut(s)	654, 1131, 1222, 1737, 2509
BpiI	GAAGAC	1 cut(s)	741
BplI	GAGNNNNNCTC	4 cut(s)	1736, 1768, 2194, 2226
BpmI	CTGGAG	1 cut(s)	1456
Bpu14I	TTCGAA	1 cut(s)	2558
BpuEI	CTTGAG	2 cut(s)	410, 2441
BpuMI	CCSGG	1 cut(s)	2120
Bsa29I	ATCGAT	1 cut(s)	2396
BsaAI	YACGTR	2 cut(s)	1841, 2219
BsaBI	GATNNNNATC	2 cut(s)	575, 2304
BsaHI	GRCGYC	4 cut(s)	863, 1331, 1719, 2134
BsaI	GGTCTC	1 cut(s)	1848
BsaJI	CCNNGG	6 cut(s)	246, 544, 616, 936, 1011, 1889
BsaWI	WCCGGW	2 cut(s)	1063, 1678
BsaXI	ACNNNNNCTCC	8 cut(s)	520, 550, 1454, 1484, 1887, 1917, 2150, 2180
Bsc4I	CCNNNNNNNGG	9 cut(s)	64, 276, 545, 895, 1122, 1324, 1425, 1774, 1948
Bse118I	RCCGGY	5 cut(s)	407, 740, 1388, 1678, 2206
Bse1I	ACTGG	3 cut(s)	1088, 1099, 1578
Bse3DI	GCAATG	1 cut(s)	2463
Bse8I	GATNNNNATC	2 cut(s)	575, 2304
BseBI	CCWGG	7 cut(s)	321, 545, 757, 937, 971, 1250, 1820
BseCI	ATCGAT	1 cut(s)	2396
BseDI	CCNNGG	6 cut(s)	246, 544, 616, 936, 1011, 1889
BseGI	GGATG	5 cut(s)	212, 1296, 1669, 2011, 2532
BseJI	GATNNNNATC	2 cut(s)	575, 2304
BseLI	CCNNNNNNNGG	9 cut(s)	64, 276, 545, 895, 1122, 1324, 1425, 1774, 1948
BseMI	GCAATG	1 cut(s)	2463
BseMII	CTCAG	5 cut(s)	366, 459, 1791, 2139, 2640
BseNI	ACTGG	3 cut(s)	1088, 1099, 1578
BseRI	GAGGAG	1 cut(s)	819
BseSI	GKGCMC	1 cut(s)	2057
BseXI	GCAGC	5 cut(s)	623, 654, 726, 2336, 2446
BseYI	CCCAGC	3 cut(s)	539, 2522, 2538
Bsh1236I	CGCG	6 cut(s)	368, 1013, 1446, 1725, 1927, 1977
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	8 cut(s)	324, 888, 1248, 1495, 1577, 1955, 2206, 2392
BshNI	GGYRCC	3 cut(s)	862, 1718, 2054
BshTI	ACCGGT	1 cut(s)	1678
BshVI	ATCGAT	1 cut(s)	2396
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	1991
BsiHKCI	CYCGRG	3 cut(s)	216, 1301, 1703
BsiSI	CCGG	9 cut(s)	129, 408, 741, 889, 1064, 1389, 1679, 2120, 2207
BsiWI	CGTACG	1 cut(s)	2219
BslFI	GGGAC	2 cut(s)	1139, 1858
BslI	CCNNNNNNNGG	9 cut(s)	64, 276, 545, 895, 1122, 1324, 1425, 1774, 1948
BsmAI	GTCTC	5 cut(s)	165, 464, 1533, 1785, 1848
BsmFI	GGGAC	2 cut(s)	1139, 1858
BsmI	GAATGC	1 cut(s)	2501
BsnI	GGCC	8 cut(s)	324, 888, 1248, 1495, 1577, 1955, 2206, 2392
Bso31I	GGTCTC	1 cut(s)	1848
BsoBI	CYCGRG	3 cut(s)	216, 1301, 1703
Bsp119I	TTCGAA	1 cut(s)	2558
Bsp1286I	GDGCHC	2 cut(s)	1991, 2057
Bsp1407I	TGTACA	2 cut(s)	1647, 1863
BspANI	GGCC	8 cut(s)	324, 888, 1248, 1495, 1577, 1955, 2206, 2392
BspCNI	CTCAG	5 cut(s)	365, 460, 1792, 2140, 2641
BspDI	ATCGAT	1 cut(s)	2396
BspFNI	CGCG	6 cut(s)	368, 1013, 1446, 1725, 1927, 1977
BspHI	TCATGA	1 cut(s)	2505
BspMAI	CTGCAG	1 cut(s)	2436
BspPI	GGATC	8 cut(s)	578, 947, 992, 1560, 1810, 2294, 2654, 2667
BspQI	GCTCTTC	1 cut(s)	1979
BspT104I	TTCGAA	1 cut(s)	2558
BspT107I	GGYRCC	3 cut(s)	862, 1718, 2054
BspTNI	GGTCTC	1 cut(s)	1848
BsrBI	CCGCTC	2 cut(s)	381, 2389
BsrDI	GCAATG	1 cut(s)	2463
BsrFI	RCCGGY	5 cut(s)	407, 740, 1388, 1678, 2206
BsrGI	TGTACA	2 cut(s)	1647, 1863
BsrI	ACTGG	3 cut(s)	1088, 1099, 1578
BssAI	RCCGGY	5 cut(s)	407, 740, 1388, 1678, 2206
BssECI	CCNNGG	6 cut(s)	246, 544, 616, 936, 1011, 1889
BssNI	GRCGYC	4 cut(s)	863, 1331, 1719, 2134
BssSI	CACGAG	1 cut(s)	1530
BssT1I	CCWWGG	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	1530
Bst2UI	CCWGG	7 cut(s)	321, 545, 757, 937, 971, 1250, 1820
Bst4CI	ACNGT	6 cut(s)	237, 1029, 1548, 2089, 2142, 2668
Bst6I	CTCTTC	2 cut(s)	864, 1979
BstACI	GRCGYC	4 cut(s)	863, 1331, 1719, 2134
BstAUI	TGTACA	2 cut(s)	1647, 1863
BstBAI	YACGTR	2 cut(s)	1841, 2219
BstBI	TTCGAA	1 cut(s)	2558
BstC8I	GCNNGC	5 cut(s)	712, 1377, 1723, 2208, 2355
BstDEI	CTNAG	9 cut(s)	352, 468, 479, 781, 791, 1800, 2148, 2309, 2649
BstDSI	CCRYGG	3 cut(s)	246, 1011, 1889
BstF5I	GGATG	5 cut(s)	212, 1296, 1669, 2011, 2532
BstFNI	CGCG	6 cut(s)	368, 1013, 1446, 1725, 1927, 1977
BstH2I	RGCGCY	2 cut(s)	866, 1722
BstHHI	GCGC	5 cut(s)	865, 1446, 1721, 1927, 1962
BstMAI	GTCTC	5 cut(s)	165, 464, 1533, 1785, 1848
BstMCI	CGRYCG	1 cut(s)	379
BstNI	CCWGG	7 cut(s)	321, 545, 757, 937, 971, 1250, 1820
BstNSI	RCATGY	3 cut(s)	748, 2334, 2632
BstSCI	CCNGG	8 cut(s)	319, 543, 755, 935, 969, 1248, 1818, 2118
BstSFI	CTRYAG	3 cut(s)	948, 2128, 2432
BstSLI	GKGCMC	1 cut(s)	2057
BstSNI	TACGTA	1 cut(s)	2219
BstUI	CGCG	6 cut(s)	368, 1013, 1446, 1725, 1927, 1977
BstV1I	GCAGC	5 cut(s)	623, 654, 726, 2336, 2446
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	3 cut(s)	952, 1552, 2659
BstXI	CCANNNNNNTGG	3 cut(s)	623, 1681, 1890
BstYI	RGATCY	3 cut(s)	952, 1552, 2659
Bsu15I	ATCGAT	1 cut(s)	2396
BsuI	GTATCC	2 cut(s)	545, 771
BsuRI	GGCC	8 cut(s)	324, 888, 1248, 1495, 1577, 1955, 2206, 2392
BsuTUI	ATCGAT	1 cut(s)	2396
BtgI	CCRYGG	3 cut(s)	246, 1011, 1889
BtgZI	GCGATG	2 cut(s)	636, 2604
BtrI	CACGTC	1 cut(s)	1981
BtsCI	GGATG	5 cut(s)	212, 1296, 1669, 2011, 2532
BtsI	GCAGTG	1 cut(s)	2429
BtsIMutI	CAGTG	7 cut(s)	148, 1081, 1571, 1797, 2094, 2429, 2664
Cac8I	GCNNGC	5 cut(s)	712, 1377, 1723, 2208, 2355
CciI	TCATGA	1 cut(s)	2505
CfoI	GCGC	5 cut(s)	865, 1446, 1721, 1927, 1962
Cfr10I	RCCGGY	5 cut(s)	407, 740, 1388, 1678, 2206
Cfr13I	GGNCC	5 cut(s)	886, 1493, 1671, 1953, 2256
Cfr42I	CCGCGG	1 cut(s)	1014
ClaI	ATCGAT	1 cut(s)	2396
CsiI	ACCWGGT	2 cut(s)	755, 969
Csp6I	GTAC	8 cut(s)	748, 812, 877, 1648, 1864, 2085, 2125, 2220
CspAI	ACCGGT	1 cut(s)	1678
CspCI	CAANNNNNGTGG	4 cut(s)	391, 426, 1513, 1548
CviAII	CATG	9 cut(s)	580, 586, 745, 1834, 1963, 2331, 2506, 2620, 2629
CviQI	GTAC	8 cut(s)	748, 812, 877, 1648, 1864, 2085, 2125, 2220
DdeI	CTNAG	9 cut(s)	352, 468, 479, 781, 791, 1800, 2148, 2309, 2649
DinI	GGCGCC	2 cut(s)	864, 1720
DrdI	GACNNNNNNGTC	1 cut(s)	1516
DseDI	GACNNNNNNGTC	1 cut(s)	1516
EaeI	YGGCCR	2 cut(s)	1575, 2390
Eam1104I	CTCTTC	2 cut(s)	864, 1979
EarI	CTCTTC	2 cut(s)	864, 1979
EciI	GGCGGA	4 cut(s)	1305, 1647, 1751, 2240
Eco105I	TACGTA	1 cut(s)	2219
Eco130I	CCWWGG	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	1848
Eco32I	GATATC	1 cut(s)	2111
Eco47I	GGWCC	2 cut(s)	1671, 2256
Eco57I	CTGAAG	1 cut(s)	2423
Eco72I	CACGTG	1 cut(s)	1841
Eco88I	CYCGRG	3 cut(s)	216, 1301, 1703
EcoRI	GAATTC	2 cut(s)	293, 485
EcoRII	CCWGG	7 cut(s)	319, 543, 755, 935, 969, 1248, 1818
EcoRV	GATATC	1 cut(s)	2111
EcoT14I	CCWWGG	1 cut(s)	616
EgeI	GGCGCC	2 cut(s)	864, 1720
EheI	GGCGCC	2 cut(s)	864, 1720
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	9 cut(s)	583, 589, 748, 1837, 1966, 2334, 2509, 2623, 2632
FaqI	GGGAC	2 cut(s)	1139, 1858
FatI	CATG	9 cut(s)	579, 585, 744, 1833, 1962, 2330, 2505, 2619, 2628
FauI	CCCGC	3 cut(s)	61, 1326, 1730
FblI	GTMKAC	1 cut(s)	1364
Fnu4HI	GCNGC	9 cut(s)	612, 643, 715, 1014, 1590, 1923, 2325, 2390, 2435
FokI	GGATG	5 cut(s)	199, 1283, 1676, 2018, 2539
Fsp4HI	GCNGC	9 cut(s)	612, 643, 715, 1014, 1590, 1923, 2325, 2390, 2435
FspBI	CTAG	6 cut(s)	257, 630, 1017, 1344, 2246, 2583
GlaI	GCGC	5 cut(s)	864, 1445, 1720, 1926, 1961
GluI	GCNGC	9 cut(s)	612, 643, 715, 1014, 1590, 1923, 2325, 2390, 2435
GsaI	CCCAGC	3 cut(s)	543, 2526, 2542
GsuI	CTGGAG	1 cut(s)	1456
HaeII	RGCGCY	2 cut(s)	866, 1722
HaeIII	GGCC	8 cut(s)	324, 888, 1248, 1495, 1577, 1955, 2206, 2392
HapII	CCGG	9 cut(s)	129, 408, 741, 889, 1064, 1389, 1679, 2120, 2207
HhaI	GCGC	5 cut(s)	865, 1446, 1721, 1927, 1962
Hin1I	GRCGYC	4 cut(s)	863, 1331, 1719, 2134
Hin1II	CATG	9 cut(s)	583, 589, 748, 1837, 1966, 2334, 2509, 2623, 2632
Hin6I	GCGC	5 cut(s)	863, 1444, 1719, 1925, 1960
HinP1I	GCGC	5 cut(s)	863, 1444, 1719, 1925, 1960
HincII	GTYRAC	4 cut(s)	1365, 1521, 2138, 2145
HindII	GTYRAC	4 cut(s)	1365, 1521, 2138, 2145
HpaII	CCGG	9 cut(s)	129, 408, 741, 889, 1064, 1389, 1679, 2120, 2207
HphI	GGTGA	9 cut(s)	46, 100, 259, 925, 985, 1339, 1820, 2104, 2498
Hpy166II	GTNNAC	7 cut(s)	877, 1365, 1521, 1648, 2138, 2145, 2164
Hpy8I	GTNNAC	7 cut(s)	877, 1365, 1521, 1648, 2138, 2145, 2164
HpyAV	CCTTC	4 cut(s)	1952, 2017, 2089, 2477
HpyCH4III	ACNGT	6 cut(s)	237, 1029, 1548, 2089, 2142, 2668
HpyCH4V	TGCA	7 cut(s)	1190, 1797, 1936, 2324, 2429, 2434, 2501
HpyF3I	CTNAG	9 cut(s)	352, 468, 479, 781, 791, 1800, 2148, 2309, 2649
Hsp92I	GRCGYC	4 cut(s)	863, 1331, 1719, 2134
Hsp92II	CATG	9 cut(s)	583, 589, 748, 1837, 1966, 2334, 2509, 2623, 2632
HspAI	GCGC	5 cut(s)	863, 1444, 1719, 1925, 1960
KasI	GGCGCC	2 cut(s)	862, 1718
KroI	GCCGGC	1 cut(s)	2206
KroNI	GCCGGC	1 cut(s)	2208
KspI	CCGCGG	1 cut(s)	1014
LguI	GCTCTTC	1 cut(s)	1979
LmnI	GCTCC	2 cut(s)	832, 1908
Lsp1109I	GCAGC	5 cut(s)	623, 654, 726, 2336, 2446
LweI	GCATC	5 cut(s)	654, 1131, 1222, 1737, 2509
MabI	ACCWGGT	2 cut(s)	755, 969
MaeI	CTAG	6 cut(s)	257, 630, 1017, 1344, 2246, 2583
MaeIII	GTNAC	4 cut(s)	52, 1327, 1562, 2460
MbiI	CCGCTC	2 cut(s)	381, 2389
MflI	RGATCY	3 cut(s)	952, 1552, 2659
MhlI	GDGCHC	2 cut(s)	1991, 2057
MluCI	AATT	8 cut(s)	293, 454, 485, 799, 835, 1048, 1908, 2598
Mly113I	GGCGCC	2 cut(s)	863, 1719
MmeI	TCCRAC	6 cut(s)	1314, 1491, 1530, 1768, 2493, 2532
MroNI	GCCGGC	1 cut(s)	2206
MseI	TTAA	7 cut(s)	24, 114, 564, 1052, 1176, 2286, 2337
MslI	CAYNNNNRTG	6 cut(s)	584, 743, 987, 1679, 1888, 2274
MspA1I	CMGCKG	3 cut(s)	514, 1013, 1058
MspI	CCGG	9 cut(s)	129, 408, 741, 889, 1064, 1389, 1679, 2120, 2207
MspR9I	CCNGG	8 cut(s)	321, 545, 757, 937, 971, 1250, 1820, 2120
Mva1269I	GAATGC	1 cut(s)	2501
MvaI	CCWGG	7 cut(s)	321, 545, 757, 937, 971, 1250, 1820
MvnI	CGCG	6 cut(s)	368, 1013, 1446, 1725, 1927, 1977
NaeI	GCCGGC	1 cut(s)	2208
NarI	GGCGCC	2 cut(s)	863, 1719
NciI	CCSGG	1 cut(s)	2120
NgoMIV	GCCGGC	1 cut(s)	2206
NlaIII	CATG	9 cut(s)	583, 589, 748, 1837, 1966, 2334, 2509, 2623, 2632
NmeAIII	GCCGAG	4 cut(s)	256, 587, 1266, 1603
NmuCI	GTSAC	3 cut(s)	52, 1327, 1562
NspI	RCATGY	3 cut(s)	748, 2334, 2632
NspV	TTCGAA	1 cut(s)	2558
OliI	CACNNNNGTG	1 cut(s)	1888
PagI	TCATGA	1 cut(s)	2505
PciI	ACATGT	1 cut(s)	2330
PciSI	GCTCTTC	1 cut(s)	1979
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 2555
PctI	GAATGC	1 cut(s)	2501
PdiI	GCCGGC	1 cut(s)	2208
PfeI	GAWTC	8 cut(s)	152, 699, 942, 1098, 1111, 1147, 2555, 2615
Pfl23II	CGTACG	1 cut(s)	2219
PflFI	GACNNNGTC	2 cut(s)	137, 1516
PinAI	ACCGGT	1 cut(s)	1678
PkrI	GCNGC	9 cut(s)	613, 644, 716, 1015, 1591, 1924, 2326, 2391, 2436
PluTI	GGCGCC	2 cut(s)	866, 1722
PmaCI	CACGTG	1 cut(s)	1841
PmlI	CACGTG	1 cut(s)	1841
Ppu21I	YACGTR	2 cut(s)	1841, 2219
PscI	ACATGT	1 cut(s)	2330
PshBI	ATTAAT	1 cut(s)	2286
Psp1406I	AACGTT	1 cut(s)	705
Psp6I	CCWGG	7 cut(s)	319, 543, 755, 935, 969, 1248, 1818
PspCI	CACGTG	1 cut(s)	1841
PspFI	CCCAGC	3 cut(s)	539, 2522, 2538
PspGI	CCWGG	7 cut(s)	319, 543, 755, 935, 969, 1248, 1818
PspLI	CGTACG	1 cut(s)	2219
PspPI	GGNCC	5 cut(s)	886, 1493, 1671, 1953, 2256
PstI	CTGCAG	1 cut(s)	2436
PsuI	RGATCY	3 cut(s)	952, 1552, 2659
PsyI	GACNNNGTC	2 cut(s)	137, 1516
PvuII	CAGCTG	1 cut(s)	1058
RsaI	GTAC	8 cut(s)	749, 813, 878, 1649, 1865, 2086, 2126, 2221
RsaNI	GTAC	8 cut(s)	748, 812, 877, 1648, 1864, 2085, 2125, 2220
RseI	CAYNNNNRTG	6 cut(s)	584, 743, 987, 1679, 1888, 2274
SacII	CCGCGG	1 cut(s)	1014
SalI	GTCGAC	1 cut(s)	1363
SapI	GCTCTTC	1 cut(s)	1979
SaqAI	TTAA	7 cut(s)	24, 114, 564, 1052, 1176, 2286, 2337
SatI	GCNGC	9 cut(s)	612, 643, 715, 1014, 1590, 1923, 2325, 2390, 2435
Sau96I	GGNCC	5 cut(s)	886, 1493, 1671, 1953, 2256
ScaI	AGTACT	1 cut(s)	2126
ScrFI	CCNGG	8 cut(s)	321, 545, 757, 937, 971, 1250, 1820, 2120
SduI	GDGCHC	2 cut(s)	1991, 2057
SexAI	ACCWGGT	2 cut(s)	755, 969
SfaNI	GCATC	5 cut(s)	654, 1131, 1222, 1737, 2509
SfcI	CTRYAG	3 cut(s)	948, 2128, 2432
SfoI	GGCGCC	2 cut(s)	864, 1720
Sfr303I	CCGCGG	1 cut(s)	1014
SfuI	TTCGAA	1 cut(s)	2558
SgrAI	CRCCGGYG	1 cut(s)	1388
SgrBI	CCGCGG	1 cut(s)	1014
SinI	GGWCC	2 cut(s)	1671, 2256
SmiMI	CAYNNNNRTG	6 cut(s)	584, 743, 987, 1679, 1888, 2274
SmlI	CTYRAG	2 cut(s)	425, 2420
SmoI	CTYRAG	2 cut(s)	425, 2420
SnaBI	TACGTA	1 cut(s)	2219
SpeI	ACTAGT	1 cut(s)	2582
Sse9I	AATT	8 cut(s)	293, 454, 485, 799, 835, 1048, 1908, 2598
SspDI	GGCGCC	2 cut(s)	862, 1718
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	6 cut(s)	257, 630, 1017, 1344, 2246, 2583
StyD4I	CCNGG	8 cut(s)	319, 543, 755, 935, 969, 1248, 1818, 2118
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	6 cut(s)	237, 1029, 1548, 2089, 2142, 2668
TaqII	GACCGA	1 cut(s)	1751
TasI	AATT	8 cut(s)	293, 454, 485, 799, 835, 1048, 1908, 2598
TatI	WGTACW	4 cut(s)	1647, 1863, 2084, 2124
TauI	GCSGC	4 cut(s)	1016, 1592, 1925, 2392
TfiI	GAWTC	8 cut(s)	152, 699, 942, 1098, 1111, 1147, 2555, 2615
Tru1I	TTAA	7 cut(s)	24, 114, 564, 1052, 1176, 2286, 2337
Tru9I	TTAA	7 cut(s)	24, 114, 564, 1052, 1176, 2286, 2337
TscAI	CASTG	7 cut(s)	148, 1088, 1578, 1804, 2094, 2436, 2671
TseFI	GTSAC	3 cut(s)	52, 1327, 1562
TseI	GCWGC	5 cut(s)	611, 642, 714, 2324, 2434
Tsp45I	GTSAC	3 cut(s)	52, 1327, 1562
TspGWI	ACGGA	3 cut(s)	474, 1408, 1878
TspRI	CASTG	7 cut(s)	148, 1088, 1578, 1804, 2094, 2436, 2671
Tth111I	GACNNNGTC	2 cut(s)	137, 1516
VpaK11BI	GGWCC	2 cut(s)	1671, 2256
VspI	ATTAAT	1 cut(s)	2286
XapI	RAATTY	5 cut(s)	293, 485, 799, 1908, 2598
XbaI	TCTAGA	1 cut(s)	1343
XceI	RCATGY	3 cut(s)	748, 2334, 2632
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1887, 1913
XmiI	GTMKAC	1 cut(s)	1364
XspI	CTAG	6 cut(s)	257, 630, 1017, 1344, 2246, 2583
ZraI	GACGTC	2 cut(s)	1332, 2135
ZrmI	AGTACT	1 cut(s)	2126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.