Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

80452289 .. 80455070

Gene Structure 2782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGAAACCAATTCTCACTCTGCTTTACCTTTTCCTGTTTGTGTATGTTGTCACCCTGTTGGTGGCCGGAGATTTGGCATCTACGTACACTCCGGTGGAAAATATCACCATTGCTTGTGGCACTAATGGGACTTTTGACCCTTATAGAGATTGGAGTGGAGATATCAATTCGAAATTCTCGCCCATTGGCAGCACCACCCAAGTCAATACTTCGACCTCCGATTACTCCTATTACTATAGTGATGACGTGCCATACTACACAGCGCGGCTTTCTCACTCGGAGTTTACTTACAGTTTCAATCTCACGGCCGGCCAAAAGTTCATACGGTTGTACTTCTACCCAGCATCCTACACCAACTTCAGCCGCTCCAAAGCTCTCTTCTCCGTCAAAGCCGGTGACTTTACCCTTCTTGACAATTTCAATGCTTCTGCCACTGCTGATGCTTCTGGGGAGAGTAGGTTATACAGAGAATTCTGTTTGAACGTTGACGAAGAACAGAGTCTAAAGACTTTCAACATCACATTCAGTCCAAGCAAAGATGCCTACGCATTTATCAACGGTATTGAAATCGTGTCGATGCCAACCAGTCTTTACTACTCTGCAGCCAAAAGCGAGGGGTTTCGGTACGTCGGAGACAGCCAACTTCATCGCATCGAAAACAGCACTGCTCTGCAGACGCTCTACCGACTAGACATCGCTGGTGGAGGCCCAACCTTATCCTTTCAATACCCCTCATCCTATGAATACATGTACCGTTCCGATGACGTGTACCGCTGGTGGAATATTTCCGATGACGTGTACTTGGATAGTTTAAGCAAAACAATCAGCGAGCTACCATACAACGATACAATCCAGCTCAAATTTGTTAAAATTCCTGAGTACTCGGCACCAGAATATGTTTACCTTACAGGCCGGTCCCTAGGGATGGAGAAATACATCAACAAGAGCTACAATCTCACCTGGAGATTTCCCGTAGATTCTTCATTCCATTACCTTGTGAGGCTGCATTTCTGTGAGCTTGAACCAAGTTTTACCCAGTCCGGGGACAGAAAGTTTCAAATCAATATAAACAGCCAGACAGTTGAAGAAGGAGCAGACATAATCCAATGGAGTGGTGGAAATGGGATTCCAGTTTACAGAGACTACGTAGTGTACATGTCTGGCCCTGAAAATGAAAAGAACGTAGATCTCTCTCTCACTCTTGCAGCAGATGAGAAGAGCTCATATAATGAGGCAATCCTGAATGGGCTTGAAATCTTTAAACTACTTGACTCAAATGTCTCATATGACGCCCGACGCAATCCTGATTCACTGCAATTGAAAAGACCAAAAAAGTCGAGTGAGTCAACTCCTACGGTTGCCATTGTTGCTGGTGTCATTTCCAGCATAATTGTGTTCTCGGTGATCGGATTCTTGGTCTTCAGGCGAGGATGGAAAGCTAAGGACTCAAGATCCAGCCACAGGACGAAGAAGTCAATGAAGGTCTATAAGTCATCTTTACCGACTAATTGTCGTCATTTTTCACTGCCAGAGATCAAAGTCGCCACTGAAAACTTCAATGCTACTTCTATTATTGGAGTTGGAGGATTTGGCAATGTCTACAAAGGACGGATTGATGGCCAGGCAACCCTTGTTGCAATCAAGAGGCTAAAACCGGATTCATCACAGGGTGCCCATGAGTTTAAAACAGAAATTGAATTGCTCACCCAAATCTGTCATCGCCATTTGGTGTCTTTGATTGGATATCGTAATGGTAAAGGTGAGATGATCTTAGTGTATGATTACATGGCACGTGGGACACTCAGGGACCATCTCTACAACACTGAGAACCCACCTCTTCCTTGGAAAGAACGGCTACAGATTTGTATTGGCGCAGCACAAGGGTTGCAGTACCTTCATAGTGGTGCCATGGGCACCATCATCCACCGTGACGTGAAGAGCACTAACATCTTATTGGATGAAAACTGGGTGGCCAAGGTTTCAGATTTTGGGCTGTCGAAAGGCACGAATCACATGTCCAAAACCCACATCAGCACTCTGGTGAAAGGCAGTTTCGGGTATCTGGACCCAGAATATTTCCGAACACAACATCTGACTCCTCAATCAGACGTCTACTCATTCGGTGTAGTGTTGTGTGAAGTATTGTGTGCGAGGCCTGCTGTGATACATACGGAGGAAATTAGGCAAGCAAACCTGGCTGAGTGGGCCAAGAGCTGTCATCAGAATGGGGAACTTGATCAAATCATCGATCCAATTTTGAGAGGTAACATCACAGCCGAGTGCCTGAATAAGTTTACTGAGGTAGCTATCAGTTGTATGCATGATAATGGAACAGAACGGCCGTCCATGACTGATGTTGTTAGGGGGCTTGAGCTTGCCTTGCAGCTTCAGCAGAGTGCAGAAGGGAATATCAACTGCATTGAAAGAAATGTCGAAACTGAAACAAGCAGCAGTGAGAAAAGTTGTGCCACCAACGATTCCATTAAATGCATATCTGCGACAATCTTCTCTGAGATTAACAACCCAATTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

845

Amino Acids

95.0

Weight (kDa)

5.97

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	37 - 421	3.8e-28	Malectin-like domain
Malectin	PF11721	270 - 382	1.9e-08	Malectin domain
Pkinase	PF00069	520 - 787	6.2e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	522 - 789	2.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1277, 1471
AatII	GACGTC	1 cut(s)	2112
AccB1I	GGYRCC	4 cut(s)	886, 1670, 1904, 1913
AccBSI	CCGCTC	1 cut(s)	366
AccI	GTMKAC	2 cut(s)	1599, 2112
AccII	CGCG	1 cut(s)	265
AciI	CCGC	3 cut(s)	265, 364, 772
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	2 cut(s)	1446, 2243
AcoI	YGGCCR	6 cut(s)	63, 306, 310, 1618, 1971, 2339
AcsI	RAATTY	4 cut(s)	173, 470, 860, 870
AcuI	CTGAAG	3 cut(s)	343, 1405, 2372
AcvI	CACGTG	1 cut(s)	1793
AcyI	GRCGYC	2 cut(s)	1290, 2109
AdeI	CACNNNGTG	1 cut(s)	1670
AfaI	GTAC	9 cut(s)	86, 332, 626, 752, 770, 800, 881, 1154, 1892
AfiI	CCNNNNNNNGG	5 cut(s)	61, 925, 1041, 1042, 1461
AflIII	ACRYGT	5 cut(s)	747, 765, 795, 1155, 2013
AhdI	GACNNNNNGTC	1 cut(s)	1509
AjiI	CACGTC	4 cut(s)	247, 766, 796, 1933
AjnI	CCWGG	3 cut(s)	959, 1620, 2193
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AleI	CACNNNNGTG	2 cut(s)	92, 2039
Alw21I	GWGCWC	2 cut(s)	1223, 1943
Alw26I	GTCTC	3 cut(s)	627, 1134, 1285
AlwI	GGATC	2 cut(s)	1446, 2243
ApeKI	GCWGC	7 cut(s)	189, 602, 1003, 1205, 1874, 2383, 2448
ApoI	RAATTY	4 cut(s)	173, 470, 860, 870
ArsI	GACNNNNNNTTYG	2 cut(s)	2000, 2032
AspA2I	CCTAGG	1 cut(s)	919
AspLEI	GCGC	2 cut(s)	265, 1874
AspS9I	GGNCC	6 cut(s)	707, 915, 1163, 1807, 2065, 2205
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	8 cut(s)	43, 97, 407, 949, 1414, 1696, 1772, 2053
AsuII	TTCGAA	1 cut(s)	170
AvaII	GGWCC	3 cut(s)	915, 1807, 2065
AvrII	CCTAGG	1 cut(s)	919
BaeGI	GKGCMC	2 cut(s)	1675, 1916
BalI	TGGCCA	2 cut(s)	1620, 1973
BanI	GGYRCC	4 cut(s)	886, 1670, 1904, 1913
BanII	GRGCYC	1 cut(s)	1223
BbrPI	CACGTG	1 cut(s)	1793
BbsI	GAAGAC	1 cut(s)	1411
Bbv12I	GWGCWC	2 cut(s)	1223, 1943
BbvI	GCAGC	7 cut(s)	201, 614, 990, 1217, 1886, 2395, 2460
BccI	CCATC	5 cut(s)	919, 1425, 1610, 1818, 1925
BceAI	ACGGC	4 cut(s)	321, 1868, 2326, 2354
BciT130I	CCWGG	3 cut(s)	961, 1622, 2195
BclI	TGATCA	1 cut(s)	2236
BcnI	CCSGG	1 cut(s)	1042
BcoDI	GTCTC	3 cut(s)	627, 1134, 1285
BfaI	CTAG	2 cut(s)	689, 920
BfmI	CTRYAG	4 cut(s)	235, 600, 671, 1856
BglII	AGATCT	1 cut(s)	1186
BisI	GCNGC	9 cut(s)	190, 266, 364, 603, 1004, 1206, 1875, 2384, 2449
BlnI	CCTAGG	1 cut(s)	919
BlsI	GCNGC	9 cut(s)	191, 267, 365, 604, 1005, 1207, 1876, 2385, 2450
BmcAI	AGTACT	1 cut(s)	881
Bme1390I	CCNGG	4 cut(s)	961, 1042, 1622, 2195
Bme18I	GGWCC	3 cut(s)	915, 1807, 2065
BmeRI	GACNNNNNGTC	1 cut(s)	1509
BmgBI	CACGTC	4 cut(s)	247, 766, 796, 1933
BmgT120I	GGNCC	6 cut(s)	707, 915, 1163, 1807, 2065, 2205
BmiI	GGNNCC	7 cut(s)	888, 917, 1672, 1808, 1906, 1915, 2067
BmrFI	CCNGG	4 cut(s)	961, 1042, 1622, 2195
BmrI	ACTGGG	2 cut(s)	1030, 1975
BmsI	GCATC	6 cut(s)	86, 353, 430, 529, 567, 660
BmuI	ACTGGG	2 cut(s)	1030, 1975
BpiI	GAAGAC	1 cut(s)	1411
BplI	GAGNNNNNCTC	2 cut(s)	1205, 1237
BpmI	CTGGAG	1 cut(s)	982
Bpu10I	CCTNAGC	1 cut(s)	1440
Bpu14I	TTCGAA	1 cut(s)	170
BpuEI	CTTGAG	2 cut(s)	1432, 2390
BpuMI	CCSGG	1 cut(s)	1042
Bsa29I	ATCGAT	1 cut(s)	2247
BsaAI	YACGTR	3 cut(s)	84, 1147, 1793
BsaHI	GRCGYC	2 cut(s)	1290, 2109
BsaJI	CCNNGG	5 cut(s)	919, 1041, 1841, 1908, 1974
BsaWI	WCCGGW	2 cut(s)	91, 1654
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 443, 473
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 925, 1041, 1042, 1461
Bse118I	RCCGGY	3 cut(s)	308, 392, 912
Bse1I	ACTGG	4 cut(s)	585, 1036, 1130, 1970
Bse3DI	GCAATG	2 cut(s)	108, 1600
BseBI	CCWGG	3 cut(s)	961, 1622, 2195
BseCI	ATCGAT	1 cut(s)	2247
BseDI	CCNNGG	5 cut(s)	919, 1041, 1841, 1908, 1974
BseGI	GGATG	6 cut(s)	344, 734, 930, 1436, 1920, 1963
BseLI	CCNNNNNNNGG	5 cut(s)	61, 925, 1041, 1042, 1461
BseMI	GCAATG	2 cut(s)	108, 1600
BseMII	CTCAG	6 cut(s)	867, 1815, 1816, 2190, 2289, 2502
BseNI	ACTGG	4 cut(s)	585, 1036, 1130, 1970
BseRI	GAGGAG	1 cut(s)	2088
BseSI	GKGCMC	2 cut(s)	1675, 1916
BseX3I	CGGCCG	2 cut(s)	306, 2339
BseXI	GCAGC	7 cut(s)	201, 614, 990, 1217, 1886, 2395, 2460
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	2418
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	2 cut(s)	309, 2342
BshNI	GGYRCC	4 cut(s)	886, 1670, 1904, 1913
BshVI	ATCGAT	1 cut(s)	2247
BsiEI	CGRYCG	2 cut(s)	309, 2342
BsiHKAI	GWGCWC	2 cut(s)	1223, 1943
BsiSI	CCGG	7 cut(s)	66, 92, 309, 393, 913, 1041, 1655
BslFI	GGGAC	5 cut(s)	142, 901, 1058, 1810, 1820
BslI	CCNNNNNNNGG	5 cut(s)	61, 925, 1041, 1042, 1461
BsmAI	GTCTC	3 cut(s)	627, 1134, 1285
BsmFI	GGGAC	5 cut(s)	142, 901, 1058, 1810, 1820
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	4 cut(s)	1223, 1675, 1916, 1943
Bsp1407I	TGTACA	1 cut(s)	1152
Bsp143I	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
Bsp19I	CCATGG	1 cut(s)	1908
BspACI	CCGC	3 cut(s)	265, 364, 772
BspCNI	CTCAG	6 cut(s)	868, 1815, 1816, 2191, 2290, 2503
BspDI	ATCGAT	1 cut(s)	2247
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	7 cut(s)	888, 917, 1672, 1808, 1906, 1915, 2067
BspMAI	CTGCAG	2 cut(s)	604, 675
BspPI	GGATC	2 cut(s)	1446, 2243
BspQI	GCTCTTC	2 cut(s)	1211, 1931
BspT104I	TTCGAA	1 cut(s)	170
BspT107I	GGYRCC	4 cut(s)	886, 1670, 1904, 1913
BsrBI	CCGCTC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	108, 1600
BsrFI	RCCGGY	3 cut(s)	308, 392, 912
BsrGI	TGTACA	1 cut(s)	1152
BsrI	ACTGG	4 cut(s)	585, 1036, 1130, 1970
BssAI	RCCGGY	3 cut(s)	308, 392, 912
BssECI	CCNNGG	5 cut(s)	919, 1041, 1841, 1908, 1974
BssMI	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
BssNI	GRCGYC	2 cut(s)	1290, 2109
BssT1I	CCWWGG	4 cut(s)	919, 1841, 1908, 1974
Bst2UI	CCWGG	3 cut(s)	961, 1622, 2195
Bst4CI	ACNGT	7 cut(s)	293, 327, 560, 755, 1081, 1357, 1928
Bst6I	CTCTTC	4 cut(s)	383, 1211, 1842, 1931
BstACI	GRCGYC	2 cut(s)	1290, 2109
BstAUI	TGTACA	1 cut(s)	1152
BstBAI	YACGTR	3 cut(s)	84, 1147, 1793
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	5 cut(s)	310, 830, 2157, 2187, 2376
BstDEI	CTNAG	8 cut(s)	876, 1440, 1771, 1802, 1824, 2199, 2298, 2511
BstDSI	CCRYGG	1 cut(s)	1908
BstF5I	GGATG	6 cut(s)	344, 734, 930, 1436, 1920, 1963
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	265, 1874
BstKTI	GATC	7 cut(s)	1189, 1407, 1454, 1536, 1770, 2239, 2251
BstMAI	GTCTC	3 cut(s)	627, 1134, 1285
BstMBI	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
BstMCI	CGRYCG	2 cut(s)	309, 2342
BstMWI	GCNNNNNNNGC	6 cut(s)	1367, 2156, 2195, 2204, 2380, 2389
BstNI	CCWGG	3 cut(s)	961, 1622, 2195
BstNSI	RCATGY	3 cut(s)	751, 1159, 2017
BstSCI	CCNGG	4 cut(s)	959, 1040, 1620, 2193
BstSFI	CTRYAG	4 cut(s)	235, 600, 671, 1856
BstSLI	GKGCMC	2 cut(s)	1675, 1916
BstSNI	TACGTA	2 cut(s)	84, 1147
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	7 cut(s)	201, 614, 990, 1217, 1886, 2395, 2460
BstV2I	GAAGAC	1 cut(s)	1411
BstX2I	RGATCY	2 cut(s)	1186, 1451
BstXI	CCANNNNNNTGG	1 cut(s)	1112
BstYI	RGATCY	2 cut(s)	1186, 1451
BstZI	CGGCCG	2 cut(s)	306, 2339
Bsu15I	ATCGAT	1 cut(s)	2247
BsuTUI	ATCGAT	1 cut(s)	2247
BtgI	CCRYGG	1 cut(s)	1908
BtgZI	GCGATG	3 cut(s)	632, 679, 1703
BtrI	CACGTC	4 cut(s)	247, 766, 796, 1933
BtsCI	GGATG	6 cut(s)	344, 734, 930, 1436, 1920, 1963
BtsI	GCAGTG	5 cut(s)	432, 663, 1310, 1523, 2458
BtsIMutI	CAGTG	7 cut(s)	432, 663, 1310, 1523, 1545, 1821, 2458
Cac8I	GCNNGC	5 cut(s)	310, 830, 2157, 2187, 2376
CfoI	GCGC	2 cut(s)	265, 1874
Cfr10I	RCCGGY	3 cut(s)	308, 392, 912
Cfr13I	GGNCC	6 cut(s)	707, 915, 1163, 1807, 2065, 2205
ClaI	ATCGAT	1 cut(s)	2247
CseI	GACGC	3 cut(s)	685, 1298, 1305
Csp6I	GTAC	9 cut(s)	85, 331, 625, 751, 769, 799, 880, 1153, 1891
CviAII	CATG	8 cut(s)	748, 1156, 1676, 1786, 1909, 2014, 2321, 2347
CviQI	GTAC	9 cut(s)	85, 331, 625, 751, 769, 799, 880, 1153, 1891
DdeI	CTNAG	8 cut(s)	876, 1440, 1771, 1802, 1824, 2199, 2298, 2511
DpnI	GATC	7 cut(s)	1188, 1406, 1453, 1535, 1769, 2238, 2250
DpnII	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
DraI	TTTAAA	2 cut(s)	1261, 1684
DraIII	CACNNNGTG	1 cut(s)	1670
DrdI	GACNNNNNNGTC	2 cut(s)	1277, 1471
DriI	GACNNNNNGTC	1 cut(s)	1509
DseDI	GACNNNNNNGTC	2 cut(s)	1277, 1471
EaeI	YGGCCR	6 cut(s)	63, 306, 310, 1618, 1971, 2339
EagI	CGGCCG	2 cut(s)	306, 2339
Eam1104I	CTCTTC	4 cut(s)	383, 1211, 1842, 1931
Eam1105I	GACNNNNNGTC	1 cut(s)	1509
EarI	CTCTTC	4 cut(s)	383, 1211, 1842, 1931
Ecl136II	GAGCTC	1 cut(s)	1221
EclXI	CGGCCG	2 cut(s)	306, 2339
Eco105I	TACGTA	2 cut(s)	84, 1147
Eco130I	CCWWGG	4 cut(s)	919, 1841, 1908, 1974
Eco147I	AGGCCT	1 cut(s)	2155
Eco24I	GRGCYC	1 cut(s)	1223
Eco32I	GATATC	2 cut(s)	163, 1745
Eco47I	GGWCC	3 cut(s)	915, 1807, 2065
Eco52I	CGGCCG	2 cut(s)	306, 2339
Eco53kI	GAGCTC	1 cut(s)	1221
Eco57I	CTGAAG	3 cut(s)	343, 1405, 2372
Eco72I	CACGTG	1 cut(s)	1793
EcoICRI	GAGCTC	1 cut(s)	1221
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	3 cut(s)	959, 1620, 2193
EcoRV	GATATC	2 cut(s)	163, 1745
EcoT14I	CCWWGG	4 cut(s)	919, 1841, 1908, 1974
EcoT22I	ATGCAT	2 cut(s)	2322, 2492
EcoT38I	GRGCYC	1 cut(s)	1223
ErhI	CCWWGG	4 cut(s)	919, 1841, 1908, 1974
FaeI	CATG	8 cut(s)	751, 1159, 1679, 1789, 1912, 2017, 2324, 2350
FaqI	GGGAC	5 cut(s)	142, 901, 1058, 1810, 1820
FatI	CATG	8 cut(s)	747, 1155, 1675, 1785, 1908, 2013, 2320, 2346
FauNDI	CATATG	1 cut(s)	1285
FbaI	TGATCA	1 cut(s)	2236
FblI	GTMKAC	2 cut(s)	1599, 2112
Fnu4HI	GCNGC	9 cut(s)	190, 266, 364, 603, 1004, 1206, 1875, 2384, 2449
FokI	GGATG	6 cut(s)	331, 721, 937, 1443, 1907, 1970
FriOI	GRGCYC	1 cut(s)	1223
FseI	GGCCGGCC	1 cut(s)	312
Fsp4HI	GCNGC	9 cut(s)	190, 266, 364, 603, 1004, 1206, 1875, 2384, 2449
FspBI	CTAG	2 cut(s)	689, 920
GlaI	GCGC	2 cut(s)	264, 1873
GluI	GCNGC	9 cut(s)	190, 266, 364, 603, 1004, 1206, 1875, 2384, 2449
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	982
HapII	CCGG	7 cut(s)	66, 92, 309, 393, 913, 1041, 1655
HgaI	GACGC	3 cut(s)	685, 1298, 1305
HhaI	GCGC	2 cut(s)	265, 1874
Hin1I	GRCGYC	2 cut(s)	1290, 2109
Hin1II	CATG	8 cut(s)	751, 1159, 1679, 1789, 1912, 2017, 2324, 2350
Hin6I	GCGC	2 cut(s)	263, 1872
HinP1I	GCGC	2 cut(s)	263, 1872
HincII	GTYRAC	2 cut(s)	487, 1347
HindII	GTYRAC	2 cut(s)	487, 1347
HpaII	CCGG	7 cut(s)	66, 92, 309, 393, 913, 1041, 1655
HphI	GGTGA	8 cut(s)	43, 97, 407, 949, 1414, 1696, 1772, 2053
Hpy188III	TCNNGA	7 cut(s)	410, 875, 1240, 1304, 1449, 1642, 2063
Hpy99I	CGWCG	2 cut(s)	632, 1299
HpyAV	CCTTC	5 cut(s)	416, 1082, 1474, 1904, 2396
HpyCH4III	ACNGT	7 cut(s)	293, 327, 560, 755, 1081, 1357, 1928
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1367, 2156, 2195, 2204, 2380, 2389
HpyF3I	CTNAG	8 cut(s)	876, 1440, 1771, 1802, 1824, 2199, 2298, 2511
Hsp92I	GRCGYC	2 cut(s)	1290, 2109
Hsp92II	CATG	8 cut(s)	751, 1159, 1679, 1789, 1912, 2017, 2324, 2350
HspAI	GCGC	2 cut(s)	263, 1872
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	2236
Kzo9I	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
LguI	GCTCTTC	2 cut(s)	1211, 1931
LmnI	GCTCC	2 cut(s)	371, 1091
Lsp1109I	GCAGC	7 cut(s)	201, 614, 990, 1217, 1886, 2395, 2460
LweI	GCATC	6 cut(s)	86, 353, 430, 529, 567, 660
MaeI	CTAG	2 cut(s)	689, 920
MaeIII	GTNAC	4 cut(s)	49, 395, 1928, 2264
MalI	GATC	7 cut(s)	1188, 1406, 1453, 1535, 1769, 2238, 2250
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
MfeI	CAATTG	2 cut(s)	1316, 2526
MflI	RGATCY	2 cut(s)	1186, 1451
MhlI	GDGCHC	4 cut(s)	1223, 1675, 1916, 1943
MlsI	TGGCCA	2 cut(s)	1620, 1973
MluNI	TGGCCA	2 cut(s)	1620, 1973
MlyI	GAGTC	5 cut(s)	508, 1265, 1352, 1439, 2089
MmeI	TCCRAC	2 cut(s)	610, 1561
Mox20I	TGGCCA	2 cut(s)	1620, 1973
Mph1103I	ATGCAT	2 cut(s)	2322, 2492
MroNI	GCCGGC	1 cut(s)	308
MscI	TGGCCA	2 cut(s)	1620, 1973
MseI	TTAA	6 cut(s)	812, 867, 1260, 1683, 2484, 2517
MslI	CAYNNNNRTG	7 cut(s)	92, 1011, 1391, 1902, 2039, 2223, 2325
Msp20I	TGGCCA	2 cut(s)	1620, 1973
MspA1I	CMGCKG	1 cut(s)	774
MspI	CCGG	7 cut(s)	66, 92, 309, 393, 913, 1041, 1655
MspR9I	CCNGG	4 cut(s)	961, 1042, 1622, 2195
MunI	CAATTG	2 cut(s)	1316, 2526
MvaI	CCWGG	3 cut(s)	961, 1622, 2195
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	6 cut(s)	1367, 2156, 2195, 2204, 2380, 2389
NaeI	GCCGGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	1042
NcoI	CCATGG	1 cut(s)	1908
NdeI	CATATG	1 cut(s)	1285
NdeII	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	8 cut(s)	751, 1159, 1679, 1789, 1912, 2017, 2324, 2350
NlaIV	GGNNCC	7 cut(s)	888, 917, 1672, 1808, 1906, 1915, 2067
NmeAIII	GCCGAG	2 cut(s)	863, 2302
NmuCI	GTSAC	3 cut(s)	49, 395, 1928
NsiI	ATGCAT	2 cut(s)	2322, 2492
NspI	RCATGY	3 cut(s)	751, 1159, 2017
NspV	TTCGAA	1 cut(s)	170
OliI	CACNNNNGTG	2 cut(s)	92, 2039
PceI	AGGCCT	1 cut(s)	2155
PciI	ACATGT	3 cut(s)	747, 1155, 2013
PciSI	GCTCTTC	2 cut(s)	1211, 1931
PcsI	WCGNNNNNNNCGW	1 cut(s)	2003
PdiI	GCCGGC	1 cut(s)	310
PfeI	GAWTC	7 cut(s)	977, 1126, 1307, 1410, 1658, 2008, 2477
PkrI	GCNGC	9 cut(s)	191, 267, 365, 604, 1005, 1207, 1876, 2385, 2450
PleI	GAGTC	5 cut(s)	507, 1265, 1351, 1439, 2089
PmaCI	CACGTG	1 cut(s)	1793
PmlI	CACGTG	1 cut(s)	1793
PpsI	GAGTC	5 cut(s)	507, 1265, 1351, 1439, 2089
Ppu21I	YACGTR	3 cut(s)	84, 1147, 1793
PscI	ACATGT	3 cut(s)	747, 1155, 2013
Psp124BI	GAGCTC	1 cut(s)	1223
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	3 cut(s)	959, 1620, 2193
PspCI	CACGTG	1 cut(s)	1793
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	3 cut(s)	959, 1620, 2193
PspN4I	GGNNCC	7 cut(s)	888, 917, 1672, 1808, 1906, 1915, 2067
PspPI	GGNCC	6 cut(s)	707, 915, 1163, 1807, 2065, 2205
PstI	CTGCAG	2 cut(s)	604, 675
PsuI	RGATCY	2 cut(s)	1186, 1451
RigI	GGCCGGCC	1 cut(s)	312
RsaI	GTAC	9 cut(s)	86, 332, 626, 752, 770, 800, 881, 1154, 1892
RsaNI	GTAC	9 cut(s)	85, 331, 625, 751, 769, 799, 880, 1153, 1891
RseI	CAYNNNNRTG	7 cut(s)	92, 1011, 1391, 1902, 2039, 2223, 2325
SacI	GAGCTC	1 cut(s)	1223
SapI	GCTCTTC	2 cut(s)	1211, 1931
SaqAI	TTAA	6 cut(s)	812, 867, 1260, 1683, 2484, 2517
SatI	GCNGC	9 cut(s)	190, 266, 364, 603, 1004, 1206, 1875, 2384, 2449
Sau3AI	GATC	7 cut(s)	1186, 1404, 1451, 1533, 1767, 2236, 2248
Sau96I	GGNCC	6 cut(s)	707, 915, 1163, 1807, 2065, 2205
ScaI	AGTACT	1 cut(s)	881
SchI	GAGTC	5 cut(s)	508, 1265, 1352, 1439, 2089
ScrFI	CCNGG	4 cut(s)	961, 1042, 1622, 2195
SduI	GDGCHC	4 cut(s)	1223, 1675, 1916, 1943
SfaNI	GCATC	6 cut(s)	86, 353, 430, 529, 567, 660
SfcI	CTRYAG	4 cut(s)	235, 600, 671, 1856
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	3 cut(s)	915, 1807, 2065
SmiMI	CAYNNNNRTG	7 cut(s)	92, 1011, 1391, 1902, 2039, 2223, 2325
SmlI	CTYRAG	2 cut(s)	1447, 2369
SmoI	CTYRAG	2 cut(s)	1447, 2369
SnaBI	TACGTA	2 cut(s)	84, 1147
SseBI	AGGCCT	1 cut(s)	2155
SsiI	CCGC	3 cut(s)	265, 364, 772
SspI	AATATT	2 cut(s)	784, 2075
SspMI	CTAG	2 cut(s)	689, 920
SstI	GAGCTC	1 cut(s)	1223
StuI	AGGCCT	1 cut(s)	2155
StyD4I	CCNGG	4 cut(s)	959, 1040, 1620, 2193
StyI	CCWWGG	4 cut(s)	919, 1841, 1908, 1974
TaaI	ACNGT	7 cut(s)	293, 327, 560, 755, 1081, 1357, 1928
TaqI	TCGA	8 cut(s)	170, 212, 575, 654, 1337, 1997, 2247, 2433
TatI	WGTACW	4 cut(s)	330, 798, 879, 1152
TauI	GCSGC	2 cut(s)	268, 366
TfiI	GAWTC	7 cut(s)	977, 1126, 1307, 1410, 1658, 2008, 2477
Tru1I	TTAA	6 cut(s)	812, 867, 1260, 1683, 2484, 2517
Tru9I	TTAA	6 cut(s)	812, 867, 1260, 1683, 2484, 2517
TscAI	CASTG	7 cut(s)	439, 670, 1317, 1530, 1552, 1828, 2458
TseFI	GTSAC	3 cut(s)	49, 395, 1928
TseI	GCWGC	7 cut(s)	189, 602, 1003, 1205, 1874, 2383, 2448
Tsp45I	GTSAC	3 cut(s)	49, 395, 1928
TspGWI	ACGGA	3 cut(s)	373, 1624, 2186
TspRI	CASTG	7 cut(s)	439, 670, 1317, 1530, 1552, 1828, 2458
VpaK11BI	GGWCC	3 cut(s)	915, 1807, 2065
XapI	RAATTY	4 cut(s)	173, 470, 860, 870
XceI	RCATGY	3 cut(s)	751, 1159, 2017
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1112, 1839
XmaJI	CCTAGG	1 cut(s)	919
XmiI	GTMKAC	2 cut(s)	1599, 2112
XspI	CTAG	2 cut(s)	689, 920
ZraI	GACGTC	1 cut(s)	2110
ZrmI	AGTACT	1 cut(s)	881
Zsp2I	ATGCAT	2 cut(s)	2322, 2492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.