Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

8073325 .. 8074247

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGCTTCACGGTGGCGGACCAGTTCTCGTTGAAGGCCATCGGGGCACGGATAATAATCGAGTTGGCCGGTGGATGGGCCAAAAAGTGTCATCGCGATGAGAAACTTGATCAGATTGTTGACCCAAATTTGAAGGGTGAAATTGCAGTCCGATGCTTGCATAAGTTTGCTTCCATTGCAATGAGTTGCATGGATGATAATGGGATCAATCGGCCGTCAATGGATGATGTTGTGAGAGGGCTTCGGTTTGCATTGCGGATGCGGGAAAACAATGAGGATTATATTGATCACATTGAAAGGACGGTTCAATATAAGATTTCATTGAACAAGGACAATGAAGGGTCTTGTTCTAGTGAGCAAAGCGAGTGGGGCGAAGGAATCCATCCAAGAGTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

5.57

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	17, 256, 262
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	2 cut(s)	66, 212
AcsI	RAATTY	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	5 cut(s)	34, 133, 296, 308, 325
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	4 cut(s)	36, 66, 78, 212
ApoI	RAATTY	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	19, 78
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	49
BccI	CCATC	3 cut(s)	47, 69, 390
BceAI	ACGGC	1 cut(s)	199
BclI	TGATCA	2 cut(s)	109, 286
BfaI	CTAG	2 cut(s)	351, 397
BglI	GCCNNNNNGGC	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	19, 78
BmsI	GCATC	2 cut(s)	143, 249
BsaBI	GATNNNNATC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	3 cut(s)	174, 186, 251
Bse8I	GATNNNNATC	1 cut(s)	56
BseGI	GGATG	5 cut(s)	80, 199, 229, 264, 382
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	3 cut(s)	174, 186, 251
BseNI	ACTGG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	49
BseX3I	CGGCCG	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	38, 68, 80, 214
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	4 cut(s)	38, 68, 80, 214
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	109, 204, 286
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	3 cut(s)	17, 256, 262
BspANI	GGCC	4 cut(s)	38, 68, 80, 214
BspFNI	CGCG	1 cut(s)	96
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	3 cut(s)	174, 186, 251
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	3 cut(s)	109, 204, 286
Bst4CI	ACNGT	2 cut(s)	13, 304
BstC8I	GCNNGC	1 cut(s)	158
BstF5I	GGATG	5 cut(s)	80, 199, 229, 264, 382
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	112, 207, 289
BstMBI	GATC	3 cut(s)	109, 204, 286
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 176, 369
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	96
BstZI	CGGCCG	1 cut(s)	212
BsuRI	GGCC	4 cut(s)	38, 68, 80, 214
BtgZI	GCGATG	2 cut(s)	77, 111
BtsCI	GGATG	5 cut(s)	80, 199, 229, 264, 382
BtuMI	TCGCGA	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	19, 78
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	6, 38, 68, 80, 214, 241
CviKI_1	RGCY	6 cut(s)	6, 38, 68, 80, 214, 241
DpnI	GATC	3 cut(s)	111, 206, 288
DpnII	GATC	3 cut(s)	109, 204, 286
EaeI	YGGCCR	2 cut(s)	66, 212
EagI	CGGCCG	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	32
EclXI	CGGCCG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	19
Eco52I	CGGCCG	1 cut(s)	212
FaeI	CATG	1 cut(s)	193
FaiI	YATR	4 cut(s)	162, 191, 282, 312
FatI	CATG	1 cut(s)	189
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	2 cut(s)	109, 286
FokI	GGATG	5 cut(s)	87, 206, 236, 271, 369
FspBI	CTAG	2 cut(s)	351, 397
HaeIII	GGCC	4 cut(s)	38, 68, 80, 214
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	1 cut(s)	193
HincII	GTYRAC	2 cut(s)	121, 394
HindII	GTYRAC	2 cut(s)	121, 394
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	121, 394
Hpy188I	TCNGA	2 cut(s)	114, 152
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	121, 394
HpyAV	CCTTC	4 cut(s)	28, 127, 332, 368
HpyCH4III	ACNGT	2 cut(s)	13, 304
HpyCH4V	TGCA	5 cut(s)	146, 160, 179, 189, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 176, 369
Hsp92II	CATG	1 cut(s)	193
Ksp22I	TGATCA	2 cut(s)	109, 286
Kzo9I	GATC	3 cut(s)	109, 204, 286
LpnPI	CCDG	2 cut(s)	35, 82
LweI	GCATC	2 cut(s)	143, 249
MaeI	CTAG	2 cut(s)	351, 397
MalI	GATC	3 cut(s)	111, 206, 288
MboI	GATC	3 cut(s)	109, 204, 286
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	127, 141
MnlI	CCTC	2 cut(s)	230, 268
MslI	CAYNNNNRTG	2 cut(s)	96, 179
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	44, 176, 369
NdeII	GATC	3 cut(s)	109, 204, 286
NlaIII	CATG	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	19, 78
RruI	TCGCGA	1 cut(s)	96
RseI	CAYNNNNRTG	2 cut(s)	96, 179
Sau3AI	GATC	3 cut(s)	109, 204, 286
Sau96I	GGNCC	2 cut(s)	19, 78
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	143, 249
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	2 cut(s)	96, 179
Sse9I	AATT	2 cut(s)	127, 141
SsiI	CCGC	3 cut(s)	17, 256, 262
SspMI	CTAG	2 cut(s)	351, 397
TaaI	ACNGT	2 cut(s)	13, 304
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	127, 141
TfiI	GAWTC	1 cut(s)	378
TspDTI	ATGAA	2 cut(s)	309, 351
TspGWI	ACGGA	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	127
XspI	CTAG	2 cut(s)	351, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.