Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

6016838 .. 6017356

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1070300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCATGCAGCATTCTCGGTGACCATCTGTATCGTACAGGTAACTCTAAACCTCTTCCTTGGGAACAACGGCTTCAAATTTGTATTGATGTTGCGCAAGGGTTACATTACCTTCACAGCGGTGCCAAAGGCTCCATTATTCATCGCGATGTGAAGAGCATAAACATTTTATTGGAAAAATGGTGGCCAAGGCATCGGATTTCGGGTTGTCAAAAAATGGGCACGACTAGCATGTCCAAAACGCACATCAGCACGGTGGTGAAAGGGAGTTTCGGGTATCTAAACCCGGAGTACTACAAACGTCAACAGTTGACTGAGAAGTCCGATGTGTACTCATTTGGGGTGGTTTTATGGGAGGTATTGTGTGCGAGGCCAGTTCTAATGCATAAGGTGGAGGCTAGGGCAATCAGCCTCGCTGAGTGGGCCAAGAGTTGTCATGGAGACGGGACACTTGATCAAATCATTGAACCAAATGTGAAAGGTAAGATTGAAGTCGAGTGCTTGAACAAATTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.55

Weight (kDa)

9.15

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 123	6.5e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	16 - 132	5.2e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	232, 319
Acc16I	TGCGCA	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	120
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	78, 509
AfaI	GTAC	3 cut(s)	37, 293, 332
AgsI	TTSAA	4 cut(s)	77, 467, 491, 505
AleI	CACNNNNGTG	2 cut(s)	120, 257
Alw26I	GTCTC	1 cut(s)	435
AoxI	GGCC	3 cut(s)	185, 371, 423
ApeKI	GCWGC	1 cut(s)	9
ApoI	RAATTY	2 cut(s)	78, 509
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	423
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	32, 271
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	2 cut(s)	228, 399
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	423
BmiI	GGNNCC	2 cut(s)	124, 133
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	59, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	59, 188
BseMII	CTCAG	2 cut(s)	306, 408
BseNI	ACTGG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	187, 373, 425
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	3 cut(s)	187, 373, 425
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	454
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	3 cut(s)	187, 373, 425
BspCNI	CTCAG	2 cut(s)	307, 409
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	124, 133
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	59, 188
BssMI	GATC	1 cut(s)	454
BssT1I	CCWWGG	2 cut(s)	59, 188
Bst4CI	ACNGT	2 cut(s)	256, 309
Bst6I	CTCTTC	2 cut(s)	60, 149
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	315, 417
BstEII	GGTNACC	1 cut(s)	20
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 422
BstNSI	RCATGY	2 cut(s)	9, 235
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	187, 373, 425
BtgZI	GCGATG	2 cut(s)	128, 162
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	36, 292, 331
CviAII	CATG	3 cut(s)	6, 232, 437
CviJI	RGCY	7 cut(s)	73, 132, 187, 373, 398, 411, 425
CviKI_1	RGCY	7 cut(s)	73, 132, 187, 373, 398, 411, 425
CviQI	GTAC	3 cut(s)	36, 292, 331
DdeI	CTNAG	2 cut(s)	315, 417
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DrdI	GACNNNNNNGTC	2 cut(s)	232, 319
DseDI	GACNNNNNNGTC	2 cut(s)	232, 319
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	2 cut(s)	60, 149
EarI	CTCTTC	2 cut(s)	60, 149
Eco130I	CCWWGG	2 cut(s)	59, 188
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	59, 188
EcoT22I	ATGCAT	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	59, 188
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	3 cut(s)	9, 235, 440
FaiI	YATR	6 cut(s)	7, 161, 233, 352, 387, 438
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	5, 231, 436
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	2 cut(s)	228, 399
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	187, 373, 425
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	3 cut(s)	9, 235, 440
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	305, 312
HindII	GTYRAC	2 cut(s)	305, 312
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	32, 271
Hpy166II	GTNNAC	3 cut(s)	305, 312, 331
Hpy188I	TCNGA	2 cut(s)	198, 325
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	3 cut(s)	305, 312, 331
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	256, 309
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	9, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 422
HpyF3I	CTNAG	2 cut(s)	315, 417
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	9, 235, 440
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	454
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	3 cut(s)	24, 300, 387
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	228, 399
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	3 cut(s)	20, 41, 102
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	2 cut(s)	47, 166
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	2 cut(s)	78, 509
MluNI	TGGCCA	1 cut(s)	187
MnlI	CCTC	5 cut(s)	63, 349, 363, 388, 422
Mox20I	TGGCCA	1 cut(s)	187
Mph1103I	ATGCAT	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	187
MslI	CAYNNNNRTG	3 cut(s)	120, 147, 257
Msp20I	TGGCCA	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	12
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	228, 422
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	9, 235, 440
NlaIV	GGNNCC	2 cut(s)	124, 133
NmuCI	GTSAC	1 cut(s)	20
NruI	TCGCGA	1 cut(s)	147
NsbI	TGCGCA	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	2 cut(s)	9, 235
OliI	CACNNNNGTG	2 cut(s)	120, 257
PaeI	GCATGC	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	11
PspEI	GGTNACC	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	124, 133
PspPI	GGNCC	1 cut(s)	423
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	3 cut(s)	37, 293, 332
RsaNI	GTAC	3 cut(s)	36, 292, 331
RseI	CAYNNNNRTG	3 cut(s)	120, 147, 257
SapI	GCTCTTC	1 cut(s)	149
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	423
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	7 cut(s)	43, 55, 114, 304, 360, 393, 484
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	3 cut(s)	120, 147, 257
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	2 cut(s)	78, 509
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	2 cut(s)	228, 399
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	59, 188
TaaI	ACNGT	2 cut(s)	256, 309
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	495
TasI	AATT	2 cut(s)	78, 509
TatI	WGTACW	2 cut(s)	291, 330
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	131
XapI	RAATTY	2 cut(s)	78, 509
XceI	RCATGY	2 cut(s)	9, 235
XspI	CTAG	2 cut(s)	228, 399
ZrmI	AGTACT	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.