Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039243.1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1949

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1948 bp

atgaagccagttctcatccctctctacctttctgtgtttcaatacatcatcgtccaactgctggccggtcagtcgctacctatatacactcctactgataatatcaccctcaactgtggctcatccggtgacaatgtcagtgactatgattctcgaaattggagtggagatatcaactcaaagcttttccctatagaagttggtcgcgcatccaaagctttgaaagcactaccatcgtcctcctcgagaggtaccgtacgccacagccaagtaccgtacaccacagcaaggctttcttactcggaattcacttatccatttcccgtcagtccgggccagaagttcattcgcttatacttctacccagcttcatacagcgccgagttcgccctctccgagtctcttttctctgtcaaagtcggtgccttcactcttctcaaagactttaacgcttctgcaaatgccgatgctgatcaatctgagacggtgctcaaagaattttgtactaacgttgagcgagaacaacagatccttaacatcacattcactcccagcaaagaggcatatgctttcatcaacgggattgaaatatggtcgatgccaacaaatctttattactctactgctaactctctcagcagcagaaactcatatccagtcaaaaacagcacagctctacagatgctataccgaatcaacgttggcggaagcatagtttcgcccaaggaagacaccggcttgtaccggacttgggatgccacagacctcctttatttggatgatcaaagtacaagactcagtgttcttcaacagaacaggactgttgaactcaaatttatcaaaataccagagtacatagccccaaaagtagtttaccaaacaggtcggtcaatggggatgaacaaaaccatcaacgagaattacaacctcacctggttatttccggtagactctaacttctcctacctgattagattgcatttttgtgagtttgaatctgaaattaccaagagcggaaaccggacgtttataatttacatagccaatcaaactgctgaacaaggagcagacataattcaatggagtggtggaaatgggataccgatatacagagactacatcttgctcatgtctgaccctggaagccagaagagagttaacctctctattgcgttgcaagtttccccactagattggatgagtagatataccgatgcattgatgaatgggatcgaaatcttcaaattattcaacccagatgggaataatgtccctctgaaacgcaacccaccaccagaggagacgccaaaacagcaaacttcacactacaagctgacaacacaagtacaaatcatcattgctgctgttgtgtccagcatatttgtgtttttcgtcctcggatttttggtcatcaagcgacgatggaaagctgacactgactccagccacaggataacgaggtcaaccatgatcccagagtcacctttaccttcttatttgtctcgttacttttcactggcagagatcaagactgccaccaaaaacttcaatgatactttcattattggagctggaggatttggcaatgtgtacaaaggatgtatcgaaggtggagtcactccagttgcaatcaaaagactgaaaccagagtcatcccagggtgcccatgagtttaagacggaaatcgagatgctctctcaactccgtcatcgtcatttggtttcgctcattggatattgtgctgataaaggtgagatgatcttagtgtacgagtatatgtcccgtggaacacttcgtgaccatctctaccacaatgagcaaccgcctctttcttgggagaaacggcttcagatttgtattggcacagcccgtggattgcaatacctccacagtggtgcgcagggcaccatcatacaccgtgatgtaaagagcacaaacatcttattgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

649

Amino Acids

73.2

Weight (kDa)

8.69

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1031
Acc16I	TGCGCA	1 cut(s)	1899
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	4 cut(s)	251, 422, 1661, 1904
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccBSI	CCGCTC	1 cut(s)	1014
AccI	GTMKAC	1 cut(s)	948
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	705, 1014, 1823
AclI	AACGTT	2 cut(s)	510, 699
AclWI	GGATC	3 cut(s)	523, 1238, 1465
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	3 cut(s)	305, 497, 833
AcuI	CTGAAG	1 cut(s)	1832
AcyI	GRCGYC	1 cut(s)	1304
AdeI	CACNNNGTG	1 cut(s)	1796
AfiI	CCNNNNNNNGG	5 cut(s)	61, 288, 751, 775, 1449
AjnI	CCWGG	3 cut(s)	932, 1138, 1656
AleI	CACNNNNGTG	1 cut(s)	1893
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	7 cut(s)	184, 218, 368, 674, 1333, 1430, 1571
AluI	AGCT	7 cut(s)	184, 218, 368, 674, 1333, 1430, 1571
Alw21I	GWGCWC	2 cut(s)	492, 1934
Alw26I	GTCTC	5 cut(s)	405, 476, 1107, 1295, 1506
AlwI	GGATC	3 cut(s)	523, 1238, 1465
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	63, 334
ApeKI	GCWGC	2 cut(s)	639, 1361
ApoI	RAATTY	3 cut(s)	305, 497, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	1599, 1631
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	3 cut(s)	209, 380, 1900
AspS9I	GGNCC	1 cut(s)	334
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	5 cut(s)	97, 140, 922, 1473, 1763
AvaI	CYCGRG	1 cut(s)	244
BaeGI	GKGCMC	2 cut(s)	1666, 1907
BanI	GGYRCC	4 cut(s)	251, 422, 1661, 1904
BbsI	GAAGAC	1 cut(s)	735
Bbv12I	GWGCWC	2 cut(s)	492, 1934
BbvI	GCAGC	2 cut(s)	651, 1348
BccI	CCATC	6 cut(s)	241, 917, 1253, 1416, 1809, 1916
BceAI	ACGGC	1 cut(s)	1859
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	3 cut(s)	934, 1140, 1658
BciVI	GTATCC	1 cut(s)	1092
BclI	TGATCA	2 cut(s)	472, 781
BcnI	CCSGG	1 cut(s)	333
BcoDI	GTCTC	5 cut(s)	405, 476, 1107, 1295, 1506
BfaI	CTAG	1 cut(s)	1190
BfmI	CTRYAG	2 cut(s)	192, 677
BfoI	RGCGCY	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	1092
BisI	GCNGC	2 cut(s)	640, 1362
BlsI	GCNGC	2 cut(s)	641, 1363
Bme1390I	CCNGG	4 cut(s)	333, 934, 1140, 1658
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	4 cut(s)	253, 424, 1663, 1906
BmrFI	CCNGG	4 cut(s)	333, 934, 1140, 1658
BmsI	GCATC	7 cut(s)	218, 457, 588, 672, 745, 1204, 1680
BpiI	GAAGAC	1 cut(s)	735
BplI	GAGNNNNNCTC	4 cut(s)	1146, 1178, 1679, 1711
BpmI	CTGGAG	3 cut(s)	1426, 1593, 1605
BpuMI	CCSGG	1 cut(s)	333
BsaBI	GATNNNNATC	2 cut(s)	471, 1235
BsaHI	GRCGYC	1 cut(s)	1304
BsaJI	CCNNGG	7 cut(s)	723, 1138, 1396, 1656, 1657, 1783, 1870
BsaWI	WCCGGW	4 cut(s)	125, 744, 943, 1020
BsaXI	ACNNNNNCTCC	4 cut(s)	532, 562, 1424, 1454
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 288, 751, 775, 1449
Bse118I	RCCGGY	2 cut(s)	65, 734
Bse1I	ACTGG	4 cut(s)	8, 656, 1521, 1622
Bse3DI	GCAATG	2 cut(s)	1356, 1591
Bse8I	GATNNNNATC	2 cut(s)	471, 1235
BseBI	CCWGG	3 cut(s)	934, 1140, 1658
BseDI	CCNNGG	7 cut(s)	723, 1138, 1396, 1656, 1657, 1783, 1870
BseGI	GGATG	9 cut(s)	15, 122, 209, 760, 784, 903, 1203, 1604, 1652
BseJI	GATNNNNATC	2 cut(s)	471, 1235
BseLI	CCNNNNNNNGG	5 cut(s)	61, 288, 751, 775, 1449
BseMI	GCAATG	2 cut(s)	1356, 1591
BseMII	CTCAG	3 cut(s)	471, 649, 811
BseNI	ACTGG	4 cut(s)	8, 656, 1521, 1622
BseRI	GAGGAG	2 cut(s)	232, 1313
BseSI	GKGCMC	2 cut(s)	1666, 1907
BseXI	GCAGC	2 cut(s)	651, 1348
BseYI	CCCAGC	2 cut(s)	364, 551
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	65, 336
BshNI	GGYRCC	4 cut(s)	251, 422, 1661, 1904
BsiHKAI	GWGCWC	2 cut(s)	492, 1934
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	7 cut(s)	66, 126, 332, 735, 745, 944, 1021
BsiWI	CGTACG	1 cut(s)	256
BslFI	GGGAC	2 cut(s)	1256, 1765
BslI	CCNNNNNNNGG	5 cut(s)	61, 288, 751, 775, 1449
BsmAI	GTCTC	5 cut(s)	405, 476, 1107, 1295, 1506
BsmBI	CGTCTC	2 cut(s)	476, 1295
BsmFI	GGGAC	2 cut(s)	1256, 1765
BsnI	GGCC	2 cut(s)	65, 336
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	4 cut(s)	492, 1666, 1907, 1934
Bsp1407I	TGTACA	1 cut(s)	1590
Bsp143I	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
BspACI	CCGC	3 cut(s)	705, 1014, 1823
BspANI	GGCC	2 cut(s)	65, 336
BspCNI	CTCAG	3 cut(s)	472, 648, 810
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	253, 424, 1663, 1906
BspPI	GGATC	3 cut(s)	523, 1238, 1465
BspT107I	GGYRCC	4 cut(s)	251, 422, 1661, 1904
BsrBI	CCGCTC	1 cut(s)	1014
BsrDI	GCAATG	2 cut(s)	1356, 1591
BsrFI	RCCGGY	2 cut(s)	65, 734
BsrGI	TGTACA	1 cut(s)	1590
BsrI	ACTGG	4 cut(s)	8, 656, 1521, 1622
BssAI	RCCGGY	2 cut(s)	65, 734
BssECI	CCNNGG	7 cut(s)	723, 1138, 1396, 1656, 1657, 1783, 1870
BssMI	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
BssNI	GRCGYC	1 cut(s)	1304
BssT1I	CCWWGG	1 cut(s)	723
Bst2UI	CCWGG	3 cut(s)	934, 1140, 1658
Bst4CI	ACNGT	7 cut(s)	116, 256, 276, 487, 823, 1892, 1919
Bst6I	CTCTTC	2 cut(s)	438, 1145
BstACI	GRCGYC	1 cut(s)	1304
BstAUI	TGTACA	1 cut(s)	1590
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	4 cut(s)	480, 635, 797, 1762
BstDSI	CCRYGG	2 cut(s)	1783, 1870
BstF5I	GGATG	9 cut(s)	15, 122, 209, 760, 784, 903, 1203, 1604, 1652
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	3 cut(s)	209, 380, 1900
BstKTI	GATC	7 cut(s)	475, 531, 784, 1233, 1473, 1527, 1761
BstMAI	GTCTC	5 cut(s)	405, 476, 1107, 1295, 1506
BstMBI	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 224, 386, 1312
BstNI	CCWGG	3 cut(s)	934, 1140, 1658
BstSCI	CCNGG	4 cut(s)	331, 932, 1138, 1656
BstSFI	CTRYAG	2 cut(s)	192, 677
BstSLI	GKGCMC	2 cut(s)	1666, 1907
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	651, 1348
BstV2I	GAAGAC	1 cut(s)	735
BstX2I	RGATCY	1 cut(s)	528
BstXI	CCANNNNNNTGG	1 cut(s)	1194
BstYI	RGATCY	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	1092
BsuRI	GGCC	2 cut(s)	65, 336
BtgI	CCRYGG	2 cut(s)	1783, 1870
BtsCI	GGATG	9 cut(s)	15, 122, 209, 760, 784, 903, 1203, 1604, 1652
BtsIMutI	CAGTG	5 cut(s)	145, 805, 1434, 1514, 1897
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	3 cut(s)	209, 380, 1900
Cfr10I	RCCGGY	2 cut(s)	65, 734
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	1 cut(s)	1312
CsiI	ACCWGGT	1 cut(s)	932
CviAII	CATG	3 cut(s)	1129, 1468, 1667
DdeI	CTNAG	4 cut(s)	480, 635, 797, 1762
DpnI	GATC	7 cut(s)	474, 530, 783, 1232, 1472, 1526, 1760
DpnII	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
DraIII	CACNNNGTG	1 cut(s)	1796
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	438, 1145
EarI	CTCTTC	2 cut(s)	438, 1145
EciI	GGCGGA	1 cut(s)	720
Eco130I	CCWWGG	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	1832
Eco88I	CYCGRG	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	932, 1138, 1656
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	723
EcoT22I	ATGCAT	1 cut(s)	1219
ErhI	CCWWGG	1 cut(s)	723
Esp3I	CGTCTC	2 cut(s)	476, 1295
FaeI	CATG	3 cut(s)	1132, 1471, 1670
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	2 cut(s)	1256, 1765
FatI	CATG	3 cut(s)	1128, 1467, 1666
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	2 cut(s)	472, 781
FblI	GTMKAC	1 cut(s)	948
Fnu4HI	GCNGC	2 cut(s)	640, 1362
FokI	GGATG	9 cut(s)	2, 109, 196, 767, 791, 910, 1210, 1611, 1639
Fsp4HI	GCNGC	2 cut(s)	640, 1362
FspBI	CTAG	1 cut(s)	1190
FspI	TGCGCA	1 cut(s)	1899
GlaI	GCGC	3 cut(s)	208, 379, 1899
GluI	GCNGC	2 cut(s)	640, 1362
GsaI	CCCAGC	2 cut(s)	368, 555
GsuI	CTGGAG	3 cut(s)	1426, 1593, 1605
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	65, 336
HapII	CCGG	7 cut(s)	66, 126, 332, 735, 745, 944, 1021
HgaI	GACGC	1 cut(s)	1312
HhaI	GCGC	3 cut(s)	209, 380, 1900
Hin1I	GRCGYC	1 cut(s)	1304
Hin1II	CATG	3 cut(s)	1132, 1471, 1670
Hin6I	GCGC	3 cut(s)	207, 378, 1898
HinP1I	GCGC	3 cut(s)	207, 378, 1898
HincII	GTYRAC	2 cut(s)	1159, 1464
HindII	GTYRAC	2 cut(s)	1159, 1464
HindIII	AAGCTT	2 cut(s)	182, 216
HpaI	GTTAAC	1 cut(s)	1159
HpaII	CCGG	7 cut(s)	66, 126, 332, 735, 745, 944, 1021
HphI	GGTGA	5 cut(s)	97, 140, 922, 1473, 1763
Hpy166II	GTNNAC	7 cut(s)	279, 874, 949, 1159, 1464, 1591, 1768
Hpy188I	TCNGA	8 cut(s)	304, 397, 481, 1000, 1135, 1278, 1400, 1851
Hpy188III	TCNNGA	5 cut(s)	153, 246, 1528, 1687, 1796
Hpy8I	GTNNAC	7 cut(s)	279, 874, 949, 1159, 1464, 1591, 1768
Hpy99I	CGWCG	1 cut(s)	1422
HpyAV	CCTTC	3 cut(s)	436, 1500, 1601
HpyCH4III	ACNGT	7 cut(s)	116, 256, 276, 487, 823, 1892, 1919
HpyCH4IV	ACGT	3 cut(s)	510, 699, 1025
HpyCH4V	TGCA	6 cut(s)	458, 979, 1177, 1217, 1628, 1879
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 224, 386, 1312
HpyF3I	CTNAG	4 cut(s)	480, 635, 797, 1762
HpySE526I	ACGT	3 cut(s)	510, 699, 1025
Hsp92I	GRCGYC	1 cut(s)	1304
Hsp92II	CATG	3 cut(s)	1132, 1471, 1670
HspAI	GCGC	3 cut(s)	207, 378, 1898
KpnI	GGTACC	1 cut(s)	255
Ksp22I	TGATCA	2 cut(s)	472, 781
KspAI	GTTAAC	1 cut(s)	1159
Kzo9I	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
LmnI	GCTCC	2 cut(s)	1064, 1568
Lsp1109I	GCAGC	2 cut(s)	651, 1348
LweI	GCATC	7 cut(s)	218, 457, 588, 672, 745, 1204, 1680
MabI	ACCWGGT	1 cut(s)	932
MaeI	CTAG	1 cut(s)	1190
MaeII	ACGT	3 cut(s)	510, 699, 1025
MaeIII	GTNAC	6 cut(s)	128, 140, 1479, 1505, 1615, 1796
MalI	GATC	7 cut(s)	474, 530, 783, 1232, 1472, 1526, 1760
MbiI	CCGCTC	1 cut(s)	1014
MboI	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
MboII	GAAGA	5 cut(s)	425, 740, 797, 1162, 1231
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	4 cut(s)	492, 1666, 1907, 1934
MluCI	AATT	9 cut(s)	157, 305, 497, 833, 919, 1002, 1032, 1074, 1244
MlyI	GAGTC	7 cut(s)	407, 789, 944, 1433, 1487, 1623, 1658
MmeI	TCCRAC	1 cut(s)	79
Mph1103I	ATGCAT	1 cut(s)	1219
MseI	TTAA	4 cut(s)	447, 534, 1158, 1674
MslI	CAYNNNNRTG	4 cut(s)	984, 1382, 1893, 1920
MspI	CCGG	7 cut(s)	66, 126, 332, 735, 745, 944, 1021
MspR9I	CCNGG	4 cut(s)	333, 934, 1140, 1658
MvaI	CCWGG	3 cut(s)	934, 1140, 1658
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	215, 224, 386, 1312
NciI	CCSGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
NlaIII	CATG	3 cut(s)	1132, 1471, 1670
NlaIV	GGNNCC	4 cut(s)	253, 424, 1663, 1906
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	5 cut(s)	128, 140, 1479, 1615, 1796
NsbI	TGCGCA	1 cut(s)	1899
NsiI	ATGCAT	1 cut(s)	1219
OliI	CACNNNNGTG	1 cut(s)	1893
PaeR7I	CTCGAG	1 cut(s)	244
PasI	CCCWGGG	1 cut(s)	1657
PcsI	WCGNNNNNNNCGW	2 cut(s)	242, 393
PfeI	GAWTC	3 cut(s)	149, 693, 995
Pfl23II	CGTACG	1 cut(s)	256
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	641, 1363
PleI	GAGTC	7 cut(s)	406, 789, 944, 1433, 1486, 1622, 1657
PpsI	GAGTC	7 cut(s)	406, 789, 944, 1433, 1486, 1622, 1657
PsiI	TTATAA	1 cut(s)	1031
Psp1406I	AACGTT	2 cut(s)	510, 699
Psp6I	CCWGG	3 cut(s)	932, 1138, 1656
PspFI	CCCAGC	2 cut(s)	364, 551
PspGI	CCWGG	3 cut(s)	932, 1138, 1656
PspLI	CGTACG	1 cut(s)	256
PspN4I	GGNNCC	4 cut(s)	253, 424, 1663, 1906
PspPI	GGNCC	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	528
PsyI	GACNNNGTC	1 cut(s)	134
RseI	CAYNNNNRTG	4 cut(s)	984, 1382, 1893, 1920
SaqAI	TTAA	4 cut(s)	447, 534, 1158, 1674
SatI	GCNGC	2 cut(s)	640, 1362
Sau3AI	GATC	7 cut(s)	472, 528, 781, 1230, 1470, 1524, 1758
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	7 cut(s)	407, 789, 944, 1433, 1487, 1623, 1658
ScrFI	CCNGG	4 cut(s)	333, 934, 1140, 1658
SduI	GDGCHC	4 cut(s)	492, 1666, 1907, 1934
SexAI	ACCWGGT	1 cut(s)	932
SfaNI	GCATC	7 cut(s)	218, 457, 588, 672, 745, 1204, 1680
SfcI	CTRYAG	2 cut(s)	192, 677
Sfr274I	CTCGAG	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	4 cut(s)	984, 1382, 1893, 1920
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	9 cut(s)	157, 305, 497, 833, 919, 1002, 1032, 1074, 1244
SsiI	CCGC	3 cut(s)	705, 1014, 1823
SspMI	CTAG	1 cut(s)	1190
StyD4I	CCNGG	4 cut(s)	331, 932, 1138, 1656
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	7 cut(s)	116, 256, 276, 487, 823, 1892, 1919
TaiI	ACGT	3 cut(s)	513, 702, 1028
TaqI	TCGA	6 cut(s)	154, 245, 596, 1233, 1605, 1686
TaqII	GACCGA	1 cut(s)	876
TasI	AATT	9 cut(s)	157, 305, 497, 833, 919, 1002, 1032, 1074, 1244
TatI	WGTACW	5 cut(s)	503, 788, 852, 1345, 1590
TfiI	GAWTC	3 cut(s)	149, 693, 995
Tru1I	TTAA	4 cut(s)	447, 534, 1158, 1674
Tru9I	TTAA	4 cut(s)	447, 534, 1158, 1674
TscAI	CASTG	5 cut(s)	145, 805, 1441, 1521, 1897
TseFI	GTSAC	5 cut(s)	128, 140, 1479, 1615, 1796
TseI	GCWGC	2 cut(s)	639, 1361
Tsp45I	GTSAC	5 cut(s)	128, 140, 1479, 1615, 1796
TspDTI	ATGAA	7 cut(s)	17, 334, 360, 562, 914, 1238, 1549
TspGWI	ACGGA	2 cut(s)	1694, 1694
TspRI	CASTG	5 cut(s)	145, 805, 1441, 1521, 1897
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	61
XapI	RAATTY	3 cut(s)	305, 497, 833
XhoI	CTCGAG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	948
XspI	CTAG	1 cut(s)	1190
Zsp2I	ATGCAT	1 cut(s)	1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.