RLG00000027682

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
13889469 .. 13890103
635 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027682

Sequence Viewer

Length: 564 bp
ATGGATACGCTCATTAGGGAATTCTGCATCAACATAAACTCGCACCAACAGAGTCTAAACATCACATTCTCGCCAACAAGAGAAATCCCAGATGCCTACGCGTTCATCAACGGAATCGAAATCGTGTCCACGCTAGTCAATCTATACTACACCGCAGCCAAAAGCCAAGGGATTCAGTATCCAGGCAACCAAGTAAACTATTACATTGAAAACATTACAGCTCTGGAAATGATGTATCGAATCAACATCGGAGGAAATTTGGTCTCACCTGAAGGAGACACCGGCATGTACCGCAGCTGGGATGCAACGGACGGTCTCTACTTAGATGATGTGAGTAGAAGATTAAGCATTATACCACTGACAAGTAGTATTCAATTAAGTTTTGATGAAACTCCTGAATACACAGCTCCAAAAGAAGTTTACATTACGGATCCCCAGTTTTTCTATCTGATAAGGCTCCATTTTTGTGAGTTTGAAGAAATGATGACAGACACCGGAGACCGGGTGTTCTTCATCTACCTAGCCAATCAAACGGTTGAGAAACATGTGGACATAATCCAGTAG

Protein Analysis

188

Amino Acids

21.58

Weight (kDa)

4.37

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 5 - 183 1e-07 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 153, 292
AclWI GGATC 2 cut(s) 425, 438
AcsI RAATTY 2 cut(s) 20, 256
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 298, 501
AflIII ACRYGT 2 cut(s) 99, 544
AgsI TTSAA 3 cut(s) 209, 374, 476
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 3 cut(s) 221, 297, 407
AluI AGCT 3 cut(s) 221, 297, 407
Alw26I GTCTC 4 cut(s) 268, 270, 320, 492
AlwI GGATC 2 cut(s) 425, 438
ApeKI GCWGC 2 cut(s) 155, 294
ApoI RAATTY 2 cut(s) 20, 256
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 258
BamHI GGATCC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 167, 306
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 1 cut(s) 189
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 4 cut(s) 268, 270, 320, 492
BfaI CTAG 2 cut(s) 134, 521
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 2 cut(s) 156, 295
BlsI GCNGC 2 cut(s) 157, 296
Bme1390I CCNGG 2 cut(s) 183, 503
BmiI GGNNCC 2 cut(s) 432, 458
BmrFI CCNGG 2 cut(s) 183, 503
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 3 cut(s) 36, 82, 292
BmuI ACTGGG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 503
BsaI GGTCTC 3 cut(s) 268, 320, 492
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 501
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 436, 559
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 298, 501
BseNI ACTGG 2 cut(s) 436, 559
BseXI GCAGC 2 cut(s) 167, 306
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 282, 495, 502
BslI CCNNNNNNNGG 2 cut(s) 298, 501
BsmAI GTCTC 4 cut(s) 268, 270, 320, 492
Bso31I GGTCTC 3 cut(s) 268, 320, 492
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 2 cut(s) 153, 292
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 432, 458
BspPI GGATC 2 cut(s) 425, 438
BspTNI GGTCTC 3 cut(s) 268, 320, 492
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 436, 559
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 314, 535
BstDEI CTNAG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 4 cut(s) 268, 270, 320, 492
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 2 cut(s) 289, 548
BstSCI CCNGG 2 cut(s) 181, 501
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 167, 306
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 356
Cfr10I RCCGGY 1 cut(s) 281
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 286, 545
CviJI RGCY 7 cut(s) 158, 165, 221, 297, 407, 457, 524
CviKI_1 RGCY 7 cut(s) 158, 165, 221, 297, 407, 457, 524
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 322
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 166
Eco31I GGTCTC 3 cut(s) 268, 320, 492
Eco57I CTGAAG 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 2 cut(s) 289, 548
FaiI YATR 6 cut(s) 35, 145, 287, 353, 546, 554
FatI CATG 2 cut(s) 285, 544
Fnu4HI GCNGC 2 cut(s) 156, 295
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 156, 295
FspBI CTAG 2 cut(s) 134, 521
GluI GCNGC 2 cut(s) 156, 295
GsaI CCCAGC 1 cut(s) 301
HapII CCGG 3 cut(s) 282, 495, 502
Hin1II CATG 2 cut(s) 289, 548
HinfI GANTC 4 cut(s) 52, 114, 172, 240
HpaII CCGG 3 cut(s) 282, 495, 502
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 4 cut(s) 129, 196, 421, 550
Hpy188I TCNGA 2 cut(s) 251, 450
Hpy188III TCNNGA 2 cut(s) 224, 395
Hpy8I GTNNAC 4 cut(s) 129, 196, 421, 550
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 314, 535
HpyCH4V TGCA 2 cut(s) 27, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 322
Hsp92II CATG 2 cut(s) 289, 548
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 2 cut(s) 412, 462
Lsp1109I GCAGC 2 cut(s) 167, 306
LweI GCATC 3 cut(s) 36, 82, 292
MaeI CTAG 2 cut(s) 134, 521
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 3 cut(s) 351, 488, 502
MflI RGATCY 1 cut(s) 430
MluCI AATT 3 cut(s) 20, 256, 374
MluI ACGCGT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 1 cut(s) 245
MseI TTAA 2 cut(s) 344, 377
MslI CAYNNNNRTG 2 cut(s) 284, 465
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 3 cut(s) 282, 495, 502
MspR9I CCNGG 2 cut(s) 183, 503
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 503
NdeII GATC 1 cut(s) 430
NlaIII CATG 2 cut(s) 289, 548
NlaIV GGNNCC 2 cut(s) 432, 458
NspI RCATGY 2 cut(s) 289, 548
PciI ACATGT 1 cut(s) 544
PfeI GAWTC 3 cut(s) 114, 172, 240
PkrI GCNGC 2 cut(s) 157, 296
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PscI ACATGT 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 432, 458
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 297
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 2 cut(s) 284, 465
SaqAI TTAA 2 cut(s) 344, 377
SatI GCNGC 2 cut(s) 156, 295
Sau3AI GATC 1 cut(s) 430
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 183, 503
SetI ASST 5 cut(s) 223, 271, 299, 409, 522
SfaNI GCATC 3 cut(s) 36, 82, 292
SmiMI CAYNNNNRTG 2 cut(s) 284, 465
Sse9I AATT 3 cut(s) 20, 256, 374
SsiI CCGC 2 cut(s) 153, 292
SspMI CTAG 2 cut(s) 134, 521
StyD4I CCNGG 2 cut(s) 181, 501
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 314, 535
TaqI TCGA 2 cut(s) 117, 238
TasI AATT 3 cut(s) 20, 256, 374
TfiI GAWTC 3 cut(s) 114, 172, 240
Tru1I TTAA 2 cut(s) 344, 377
Tru9I TTAA 2 cut(s) 344, 377
TscAI CASTG 1 cut(s) 363
TseI GCWGC 2 cut(s) 155, 294
TspDTI ATGAA 3 cut(s) 94, 402, 502
TspGWI ACGGA 3 cut(s) 126, 323, 443
TspRI CASTG 1 cut(s) 363
XapI RAATTY 2 cut(s) 20, 256
XceI RCATGY 2 cut(s) 289, 548
XspI CTAG 2 cut(s) 134, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.