Rmu_sc0021575.1_g000001

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021575.1
Physical Location & Seq
Reverse (-)
2 .. 557
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021575.1_g000001.1.cds

Sequence Viewer

Length: 556 bp
atgaaaccaattctcgctcctcttcaccctttcagcttgtttctcctcttcgtcaccctactggtgaccggagagtccacaaccatctactctccaacagatcatatcaaccttgactgcggctcatccggcgacacggtcagtgactatgattctcaaacttggattggagatatcaactcgaatctttcccctatagaagttcgtagtacatcccaagttttagaagcaccaccgtcgtcctacacgggcagccaagtaccgtacaccacagcacggctttctcgctcggaattcacttaccgatttcccctcagtcccggccagaagttcattcgcttatacttttacccaggctcatacaacgctgacttcgaccgctccaagtccctcttctctgtcaaagccggtggctataactacacccttctcaaagacttcaacgcagatgtcagtgcagaagccgattttcttgggacgatgcggaaagaattctgtattaacattgaggcagaacaacagagtctgaacatcacattcactcccagcaaagatg

Protein Analysis

185

Amino Acids

20.62

Weight (kDa)

4.86

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AccBSI CCGCTC 1 cut(s) 381
AciI CCGC 3 cut(s) 120, 379, 484
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 2 cut(s) 293, 491
AfaI GTAC 3 cut(s) 211, 261, 266
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
AlwNI CAGNNNCTG 1 cut(s) 526
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 2 cut(s) 293, 491
Asp700I GAANNNNTTC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 17, 46, 76
BbvI GCAGC 1 cut(s) 264
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 2 cut(s) 121, 253
BlsI GCNGC 2 cut(s) 122, 254
Bme1390I CCNGG 2 cut(s) 321, 354
BmrFI CCNGG 2 cut(s) 321, 354
BmsI GCATC 1 cut(s) 471
BpuMI CCSGG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 125, 212
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 328
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 9, 35
BseXI GCAGC 1 cut(s) 264
BseYI CCCAGC 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 379
BsiSI CCGG 4 cut(s) 69, 129, 321, 408
BslFI GGGAC 3 cut(s) 303, 373, 490
BslI CCNNNNNNNGG 1 cut(s) 276
BsmFI GGGAC 3 cut(s) 303, 373, 490
BsnI GGCC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 3 cut(s) 120, 379, 484
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 327
BsrBI CCGCTC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 139, 237, 264
Bst6I CTCTTC 3 cut(s) 27, 53, 398
BstDEI CTNAG 1 cut(s) 314
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 2 cut(s) 125, 212
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 354
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 319, 352
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 2 cut(s) 125, 212
BtsIMutI CAGTG 2 cut(s) 148, 460
CaiI CAGNNNCTG 1 cut(s) 526
Cfr10I RCCGGY 1 cut(s) 407
Csp6I GTAC 3 cut(s) 210, 260, 265
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviJI RGCY 9 cut(s) 36, 123, 255, 280, 324, 357, 407, 414, 464
CviKI_1 RGCY 9 cut(s) 36, 123, 255, 280, 324, 357, 407, 414, 464
CviQI GTAC 3 cut(s) 210, 260, 265
DdeI CTNAG 1 cut(s) 314
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 27, 53, 398
EarI CTCTTC 3 cut(s) 27, 53, 398
Eco32I GATATC 1 cut(s) 175
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRI GAATTC 2 cut(s) 293, 491
EcoRII CCWGG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 175
FaiI YATR 6 cut(s) 105, 150, 197, 343, 361, 417
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 3 cut(s) 303, 373, 490
Fnu4HI GCNGC 2 cut(s) 121, 253
FokI GGATG 2 cut(s) 112, 199
Fsp4HI GCNGC 2 cut(s) 121, 253
GluI GCNGC 2 cut(s) 121, 253
GsaI CCCAGC 1 cut(s) 549
HaeIII GGCC 1 cut(s) 324
HapII CCGG 4 cut(s) 69, 129, 321, 408
HinfI GANTC 4 cut(s) 74, 152, 184, 523
HpaII CCGG 4 cut(s) 69, 129, 321, 408
HphI GGTGA 3 cut(s) 17, 46, 76
Hpy166II GTNNAC 2 cut(s) 78, 267
Hpy188I TCNGA 2 cut(s) 292, 528
Hpy8I GTNNAC 2 cut(s) 78, 267
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 3 cut(s) 139, 237, 264
HpyCH4V TGCA 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 1 cut(s) 314
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 22, 386
LpnPI CCDG 8 cut(s) 47, 82, 142, 334, 338, 339, 366, 421
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 1 cut(s) 471
MaeIII GTNAC 3 cut(s) 52, 64, 143
MalI GATC 1 cut(s) 102
MbiI CCGCTC 1 cut(s) 381
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 14, 40, 385
MluCI AATT 3 cut(s) 9, 293, 491
MlyI GAGTC 2 cut(s) 83, 532
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 5 cut(s) 30, 56, 323, 401, 502
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 1 cut(s) 501
MspI CCGG 4 cut(s) 69, 129, 321, 408
MspR9I CCNGG 2 cut(s) 321, 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 321
NdeII GATC 1 cut(s) 100
NmuCI GTSAC 3 cut(s) 52, 64, 143
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 152, 184
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 122, 254
PleI GAGTC 2 cut(s) 82, 531
PpsI GAGTC 2 cut(s) 82, 531
Psp6I CCWGG 1 cut(s) 352
PspEI GGTNACC 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 3 cut(s) 211, 261, 266
RsaNI GTAC 3 cut(s) 210, 260, 265
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 2 cut(s) 121, 253
Sau3AI GATC 1 cut(s) 100
SchI GAGTC 2 cut(s) 83, 532
ScrFI CCNGG 2 cut(s) 321, 354
SetI ASST 2 cut(s) 38, 114
SfaNI GCATC 1 cut(s) 471
SfcI CTRYAG 1 cut(s) 195
Sse9I AATT 3 cut(s) 9, 293, 491
SsiI CCGC 3 cut(s) 120, 379, 484
StyD4I CCNGG 2 cut(s) 319, 352
TaaI ACNGT 3 cut(s) 139, 237, 264
TaqI TCGA 2 cut(s) 182, 375
TasI AATT 3 cut(s) 9, 293, 491
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 2 cut(s) 152, 184
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 2 cut(s) 148, 460
TseFI GTSAC 3 cut(s) 52, 64, 143
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 3 cut(s) 52, 64, 143
TspDTI ATGAA 2 cut(s) 17, 322
TspRI CASTG 2 cut(s) 148, 460
Tth111I GACNNNGTC 1 cut(s) 137
XapI RAATTY 2 cut(s) 293, 491
XmnI GAANNNNTTC 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.