RLG00000002260

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
30846137 .. 30846694
558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002260

Sequence Viewer

Length: 558 bp
ATGTCCAAAACCCACATAAGCATAATTGTGAAAGACAGTTTTGGGTACCTAGACCCAGAATACTACCGCCGACAACGTCTGATTTCTCAATCAGACGTGTACTCACTTGGTGTAGTATTGTTTGAGGTGTTGTGTGCAAGGCCAGCAGTGATACAAACAGAAGAGCTGAAGCAAGTGAGCTTGGCTGAGTGGGCCAAGAGCTGTCATCAGAATGGGGAACTTGATCAAATCATTAATCCAAGTTTGAGGGGTAAGATCGCAGTCGAGTGCCTAAATAAGTTCACTGAGATAGCTATCAGTTGCATGCATGACAATGGAACAGAACGGTCGTCCATGAATGATGTTGTTAGGGGGCTTGAACTTGCATTGCAGCTTCAACAGTGTGCAAAAGGGAATATCAACTGCACTGAAAGGAATGTCGAAATGAACCAAGCAGTAGTGAGCAAAGTTGTGCCAGCAATGATTCCATTAAATGTATATCAGCAACTATCTTCTCTGAGATTAACAAGCCAAGTAGGAGATGATGAGCATTATTTCAAAGAAATGAAAGCACTCTAG

Protein Analysis

186

Amino Acids

20.87

Weight (kDa)

5.82

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 13 - 116 1.8e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 15 - 118 9e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AciI CCGC 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 2 cut(s) 47, 101
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 3 cut(s) 359, 377, 538
AjiI CACGTC 1 cut(s) 97
AluBI AGCT 5 cut(s) 166, 180, 201, 293, 373
AluI AGCT 5 cut(s) 166, 180, 201, 293, 373
AoxI GGCC 2 cut(s) 140, 192
ApeKI GCWGC 1 cut(s) 370
AseI ATTAAT 1 cut(s) 234
Asp718I GGTACC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 382
BclI TGATCA 1 cut(s) 223
BfaI CTAG 2 cut(s) 50, 556
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 293
Bse3DI GCAATG 2 cut(s) 365, 465
Bse8I GATNNNNATC 1 cut(s) 293
BseJI GATNNNNATC 1 cut(s) 293
BseMI GCAATG 2 cut(s) 365, 465
BseMII CTCAG 3 cut(s) 177, 276, 488
BseXI GCAGC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 388
Bsh1285I CGRYCG 1 cut(s) 329
BshFI GGCC 2 cut(s) 142, 194
BshNI GGYRCC 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 329
BsnI GGCC 2 cut(s) 142, 194
Bsp143I GATC 2 cut(s) 223, 255
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 142, 194
BspCNI CTCAG 3 cut(s) 178, 277, 489
BspLI GGNNCC 1 cut(s) 47
BspQI GCTCTTC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 45
BsrDI GCAATG 2 cut(s) 365, 465
BssMI GATC 2 cut(s) 223, 255
Bst4CI ACNGT 3 cut(s) 38, 327, 381
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 144, 305, 456
BstDEI CTNAG 3 cut(s) 186, 285, 497
BstKTI GATC 2 cut(s) 226, 258
BstMBI GATC 2 cut(s) 223, 255
BstMCI CGRYCG 1 cut(s) 329
BstMWI GCNNNNNNNGC 2 cut(s) 143, 191
BstNSI RCATGY 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 142, 194
BtrI CACGTC 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 4 cut(s) 153, 282, 386, 405
Cac8I GCNNGC 3 cut(s) 144, 305, 456
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 2 cut(s) 46, 100
CviAII CATG 3 cut(s) 304, 308, 334
CviQI GTAC 2 cut(s) 46, 100
DdeI CTNAG 3 cut(s) 186, 285, 497
DpnI GATC 2 cut(s) 225, 257
DpnII GATC 2 cut(s) 223, 255
DraIII CACNNNGTG 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 309
FaeI CATG 3 cut(s) 307, 311, 337
FaiI YATR 6 cut(s) 17, 23, 305, 309, 335, 478
FatI CATG 3 cut(s) 303, 307, 333
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 371
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 2 cut(s) 50, 556
GluI GCNGC 1 cut(s) 371
HaeIII GGCC 2 cut(s) 142, 194
Hin1II CATG 3 cut(s) 307, 311, 337
HinfI GANTC 1 cut(s) 463
Hpy166II GTNNAC 2 cut(s) 100, 282
Hpy188I TCNGA 4 cut(s) 81, 94, 210, 498
Hpy8I GTNNAC 2 cut(s) 100, 282
HpyCH4III ACNGT 3 cut(s) 38, 327, 381
HpyCH4IV ACGT 2 cut(s) 76, 96
HpyCH4V TGCA 7 cut(s) 137, 303, 307, 365, 370, 386, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 191
HpyF3I CTNAG 3 cut(s) 186, 285, 497
HpySE526I ACGT 2 cut(s) 76, 96
Hsp92II CATG 3 cut(s) 307, 311, 337
KpnI GGTACC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 223, 255
LguI GCTCTTC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 69, 156, 468
Lsp1109I GCAGC 1 cut(s) 382
MaeI CTAG 2 cut(s) 50, 556
MaeII ACGT 2 cut(s) 76, 96
MalI GATC 2 cut(s) 225, 257
MboI GATC 2 cut(s) 223, 255
MboII GAAGA 2 cut(s) 173, 483
MluCI AATT 1 cut(s) 24
MnlI CCTC 2 cut(s) 118, 240
Mph1103I ATGCAT 1 cut(s) 309
MseI TTAA 3 cut(s) 234, 470, 503
MslI CAYNNNNRTG 3 cut(s) 26, 210, 312
MwoI GCNNNNNNNGC 2 cut(s) 143, 191
NdeII GATC 2 cut(s) 223, 255
NlaIII CATG 3 cut(s) 307, 311, 337
NlaIV GGNNCC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 463
PflFI GACNNNGTC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 372
PshBI ATTAAT 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 192
PsyI GACNNNGTC 1 cut(s) 75
RsaI GTAC 2 cut(s) 47, 101
RsaNI GTAC 2 cut(s) 46, 100
RseI CAYNNNNRTG 3 cut(s) 26, 210, 312
SapI GCTCTTC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 234, 470, 503
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 2 cut(s) 223, 255
Sau96I GGNCC 1 cut(s) 192
SetI ASST 9 cut(s) 51, 79, 99, 129, 168, 182, 203, 295, 375
SmiMI CAYNNNNRTG 3 cut(s) 26, 210, 312
SphI GCATGC 1 cut(s) 307
Sse9I AATT 1 cut(s) 24
SsiI CCGC 1 cut(s) 67
SspMI CTAG 2 cut(s) 50, 556
TaaI ACNGT 3 cut(s) 38, 327, 381
TaiI ACGT 2 cut(s) 79, 99
TaqI TCGA 2 cut(s) 264, 420
TasI AATT 1 cut(s) 24
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 3 cut(s) 234, 470, 503
Tru9I TTAA 3 cut(s) 234, 470, 503
TscAI CASTG 4 cut(s) 153, 289, 386, 412
TseI GCWGC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 350, 440
TspRI CASTG 4 cut(s) 153, 289, 386, 412
Tth111I GACNNNGTC 1 cut(s) 75
VspI ATTAAT 1 cut(s) 234
XceI RCATGY 1 cut(s) 307
XspI CTAG 2 cut(s) 50, 556
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.