Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005425.1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

76664 .. 81738

Gene Structure 5075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005425.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3225 bp

atgctagacgcatcgccagcctcattaggttgggcggtaggaactttctcgccttcagtagtaggctgtcgatttcctcctcgttcagttgacatctctatcgatggagggtggggagaaaatctttggattacctgttcttcggaagacctcgacagtctgcacgcgagtatgccagcaccgttcgggtgcggttgttggggtcggctcccgatgagactaggaccgaagcacgttgatagagggtttggtggcactagcagtcggctcctaaggattttgggactggagtgtggtcaccggacatgtctgcgtgtgtatcatgagggagaagcatgcagtggtgaaactgcaactccaccggtcattgctactccagcacccgcggcaagaaagctggacctcaatggctcattgttaaggttttcgggaaatcaattcaaggatggactgtttcacttccaaggtctcactacccctagtcttccgccggttggaaggtctctgtttggaggaaccgagacaaataaggtacgcaaacctattgttattcgtagtgaagaaaaaagacaggttactgaaggcaatgagttgttggctttggtacccgtggacaccaacctgcaagcaaagagagaccgatcttttccttctccaaaaaagcttcaatttttgatgtctgatttcttggagggcaaaacaagccctattggcccctccaagaaagtaaaaatgcctgaattccctaccaagttcagtgcaaaatctctgggtttagtagagacaccaagtggtatgttgtcgccacctatatacactccgccggatgatatcaccctcgactgtggcaatttggggcaacactcgaatagctatgaccccaggatttggagtggagacatcaactcaacattttcccccaaacaagatggtgacagtaacgccacatcccaattcagaaaagcacctccgtcgttatcacaatccgccagccaagtcccttacaccactgcccgcctttcttactcggaattcacttacagaattcctctttctcccgggaaaaagttcatccgcttgcatttcaacccggcttcatacccagacttccacatctccaactccctcttctctgtcacagctagccactccatccgcggctacatcctcctcaaagacttcagagcttacatcactgccgacgatgcttacagggagatgccgctcatgagagaattctgcgtcaacatagagacacaacatagtttgaacatcacattcagtcccagcaaagatgcatacgctttcatcaatgggattgaaatcgtgtctatgccctccaaaatttacaccacttcagttctttccatcggcagtgatagcccttattcattcgaaagcagaatagctctggacatggtgtaccgaatcaacataggcggaaagccaatcaacactactgaagacaccggaatgtaccggaaatgggacgctgccgacgacatgtatttggatggttttagtaaaaaatacagcgtgctagcacagaacaatacagttgagctcaattttgtcgaaactccagagtactctgctccaaaagaagtttacaatacaggtcggtccctgtggatgaacaacactatcaacaagagttacaatctcacttggtcatttcctgtagactctagcttctcctacctggttagattgcatttttgtgagtttgagtctgacgttaccaagagcggagagaggacatttgtaatttacttagccaatcaaactgctgaacaaggagcagacgtaattctatggagtggtggaaatgggataccaacactcagagactacaccttgctcatgcttggccctggaagccagaaaaaagttaatctctctattgcattgcaagcatcacgagtagatgggttgaccgaatacaaggatgcaatgttgaatggactcgaaatcttcaagctaatttacccaaaaggtgatctcaaaaccaacccagacccaacaatgacgccgcatggtaaatcgtttcctgtgcttgccctcgttgctggtgtagtttccagcatacttgtgttctctgtcctcggatacttggttttcaggaaaagatggaaagtcaaggaccctgactacaggataaggaagttcacgacgacccctgggtcatcatatccgtgtcgctacttttcactggcagagatcaaagccgccaccaaaaacttcagtgatgcttttatcattggaggtggaggttttggtaatgtatataaaggatgcattgatggtggtgccactccagttgcaatcaaacggctgaaaccagaatcatcccaaggtgtccatgagtttgagactgaaattgagatgctctcccaactccgtcatcgccatttggttccactcattggatgttgtactgataaaggagagatgatcttagtgtatgattacatggcacaagggaccctccgtgaccatctctaccacactaatactccacctcttctttgggaacaacggcttcagatttgtattggtgcagctagaggattgcagtacctccatagtggtgtgaagggcaccatcattcaccgagatgtgaagagcacaaacatcttattggatgacaactgggtggccaaggtttcagatttcgggctgtccaaaggcacaacaaacatggccaaaacccacatcagcacgattgtgaaaggcagtttcgggtatctggatccagaatactaccgacgacaacatctgactgagaagtcagacgtctactcatttggtgtagttctgtgcgaggtattatgtgcaaggccagcagtgatacatacagaagagctgaggcaagcaagcctggctgagtgggccaagagctgtcatcagaatggagaacttgatcaaatcattgatccaagtttgagaggtaagattgcagccgagtgcttgaatatattctctgatgtagccatgagttgcatgcatgatgatggaaccaaacggccatccatgaatgatgttgtaagagggcttgagcttgctttggaccttcaaccgagcgcagaggggaacatcaactgcactgaagggactggtaaaactgaaacaaacagtagtgagcaaagttgtgcaaacaacaattccattatatgcatatctgggacaatcttttctgagatcaacaacccaagtgggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

1074

Amino Acids

118.56

Weight (kDa)

7.28

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	2182, 2788
AatII	GACGTC	1 cut(s)	2799
Acc36I	ACCTGC	1 cut(s)	630
Acc65I	GGTACC	1 cut(s)	604
AccB1I	GGYRCC	3 cut(s)	604, 2309, 2600
AccB7I	CCANNNNNTGG	2 cut(s)	888, 2426
AccBSI	CCGCTC	2 cut(s)	1225, 1749
AccI	GTMKAC	2 cut(s)	1683, 2799
AccII	CGCG	3 cut(s)	167, 386, 1158
AclWI	GGATC	3 cut(s)	2747, 2760, 2930
AcoI	YGGCCR	3 cut(s)	2658, 2703, 3026
AcsI	RAATTY	5 cut(s)	740, 1031, 1044, 1235, 1344
AcuI	CTGAAG	8 cut(s)	39, 600, 1165, 1341, 1482, 2227, 2528, 3129
AcyI	GRCGYC	2 cut(s)	2030, 2796
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	7 cut(s)	534, 606, 1424, 1478, 1589, 2437, 2579
AfiI	CCNNNNNNNGG	4 cut(s)	494, 888, 1486, 2426
AflIII	ACRYGT	2 cut(s)	305, 1503
AgeI	ACCGGT	1 cut(s)	361
AgsI	TTSAA	9 cut(s)	442, 668, 1087, 1270, 1322, 1960, 1978, 2974, 3077
AjnI	CCWGG	5 cut(s)	881, 1701, 1873, 2179, 2880
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
AleI	CACNNNNGTG	1 cut(s)	2726
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
Alw21I	GWGCWC	2 cut(s)	1566, 2630
AlwI	GGATC	3 cut(s)	2747, 2760, 2930
Ama87I	CYCGRG	1 cut(s)	1058
AoxI	GGCC	7 cut(s)	712, 1870, 2658, 2703, 2840, 2892, 3026
ApeKI	GCWGC	3 cut(s)	1493, 2561, 2960
ApoI	RAATTY	5 cut(s)	740, 1031, 1044, 1235, 1344
AsiGI	ACCGGT	1 cut(s)	361
Asp700I	GAANNNNTTC	2 cut(s)	1067, 2978
Asp718I	GGTACC	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	3086
AspS9I	GGNCC	9 cut(s)	224, 400, 713, 1623, 1871, 2143, 2484, 2892, 3070
AsuC2I	CCSGG	3 cut(s)	1059, 1060, 1091
AsuHPI	GGTGA	6 cut(s)	290, 356, 826, 944, 2009, 2603
AsuII	TTCGAA	1 cut(s)	1395
AsuNHI	GCTAGC	2 cut(s)	1142, 1540
AvaI	CYCGRG	1 cut(s)	1058
AvaII	GGWCC	6 cut(s)	224, 400, 1623, 2143, 2484, 3070
AxyI	CCTNAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	2603
BalI	TGGCCA	2 cut(s)	2660, 2705
BamHI	GGATCC	1 cut(s)	2752
BanI	GGYRCC	3 cut(s)	604, 2309, 2600
BanII	GRGCYC	1 cut(s)	1566
BauI	CACGAG	1 cut(s)	1920
BbsI	GAAGAC	3 cut(s)	153, 476, 1470
Bbv12I	GWGCWC	2 cut(s)	1566, 2630
BbvCI	CCTCAGC	1 cut(s)	2867
BbvI	GCAGC	3 cut(s)	1480, 2573, 2972
BceAI	ACGGC	3 cut(s)	2348, 2555, 3041
BcgI	CGANNNNNNTGC	2 cut(s)	954, 988
BciT130I	CCWGG	5 cut(s)	883, 1703, 1875, 2181, 2882
BciVI	GTATCC	2 cut(s)	1827, 2102
BclI	TGATCA	1 cut(s)	2923
BcnI	CCSGG	3 cut(s)	1059, 1060, 1091
BfaI	CTAG	8 cut(s)	5, 221, 258, 480, 1143, 1541, 1689, 2565
BfmI	CTRYAG	2 cut(s)	1680, 2152
BfuAI	ACCTGC	1 cut(s)	630
BfuI	GTATCC	2 cut(s)	1827, 2102
BglI	GCCNNNNNGGC	1 cut(s)	711
BisI	GCNGC	8 cut(s)	387, 1159, 1223, 1494, 2033, 2229, 2562, 2961
BlsI	GCNGC	8 cut(s)	388, 1160, 1224, 1495, 2034, 2230, 2563, 2962
BmcAI	AGTACT	1 cut(s)	1589
Bme1390I	CCNGG	8 cut(s)	883, 1059, 1060, 1091, 1703, 1875, 2181, 2882
Bme18I	GGWCC	6 cut(s)	224, 400, 1623, 2143, 2484, 3070
BmeT110I	CYCGRG	1 cut(s)	1058
BmgT120I	GGNCC	9 cut(s)	224, 400, 713, 1623, 1871, 2143, 2484, 2892, 3070
BmrFI	CCNGG	8 cut(s)	883, 1059, 1060, 1091, 1703, 1875, 2181, 2882
BmrI	ACTGGG	1 cut(s)	2662
BmsI	GCATC	9 cut(s)	20, 1195, 1209, 1285, 1925, 1939, 2239, 2285, 2376
BmtI	GCTAGC	2 cut(s)	1146, 1544
BmuI	ACTGGG	1 cut(s)	2662
BpiI	GAAGAC	3 cut(s)	153, 476, 1470
BplI	GAGNNNNNCTC	2 cut(s)	2375, 2407
BpmI	CTGGAG	4 cut(s)	308, 360, 1566, 2301
Bpu10I	CCTNAGC	1 cut(s)	2867
Bpu14I	TTCGAA	1 cut(s)	1395
BpuEI	CTTGAG	1 cut(s)	3077
BpuMI	CCSGG	3 cut(s)	1059, 1060, 1091
Bsa29I	ATCGAT	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	1322
BsaHI	GRCGYC	2 cut(s)	2030, 2796
BsaI	GGTCTC	3 cut(s)	473, 507, 630
BsaWI	WCCGGW	4 cut(s)	300, 361, 1469, 1479
BsaXI	ACNNNNNCTCC	6 cut(s)	340, 370, 1791, 1821, 2500, 2530
Bsc4I	CCNNNNNNNGG	4 cut(s)	494, 888, 1486, 2426
Bse118I	RCCGGY	2 cut(s)	361, 490
Bse1I	ACTGG	5 cut(s)	291, 2217, 2318, 2657, 3121
Bse21I	CCTNAGG	1 cut(s)	272
Bse3DI	GCAATG	4 cut(s)	366, 592, 1907, 1959
Bse8I	GATNNNNATC	1 cut(s)	1322
BseBI	CCWGG	5 cut(s)	883, 1703, 1875, 2181, 2882
BseCI	ATCGAT	1 cut(s)	102
BseJI	GATNNNNATC	1 cut(s)	1322
BseLI	CCNNNNNNNGG	4 cut(s)	494, 888, 1486, 2426
BseMI	GCAATG	4 cut(s)	366, 592, 1907, 1959
BseMII	CTCAG	5 cut(s)	1858, 2775, 2858, 2877, 3189
BseNI	ACTGG	5 cut(s)	291, 2217, 2318, 2657, 3121
BseRI	GAGGAG	2 cut(s)	69, 1160
BseSI	GKGCMC	1 cut(s)	2603
BseXI	GCAGC	3 cut(s)	1480, 2573, 2972
BseYI	CCCAGC	1 cut(s)	1286
BsgI	GTGCAG	3 cut(s)	146, 2580, 3088
Bsh1236I	CGCG	3 cut(s)	167, 386, 1158
BshFI	GGCC	7 cut(s)	714, 1872, 2660, 2705, 2842, 2894, 3028
BshNI	GGYRCC	3 cut(s)	604, 2309, 2600
BshTI	ACCGGT	1 cut(s)	361
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	1566, 2630
BsiHKCI	CYCGRG	1 cut(s)	1058
BsiSI	CCGG	8 cut(s)	301, 362, 491, 824, 1059, 1091, 1470, 1480
BslFI	GGGAC	8 cut(s)	297, 983, 1269, 1502, 1609, 2497, 3127, 3199
BslI	CCNNNNNNNGG	4 cut(s)	494, 888, 1486, 2426
BsmFI	GGGAC	8 cut(s)	297, 983, 1269, 1502, 1609, 2497, 3127, 3199
BsnI	GGCC	7 cut(s)	714, 1872, 2660, 2705, 2842, 2894, 3028
Bso31I	GGTCTC	3 cut(s)	473, 507, 630
BsoBI	CYCGRG	1 cut(s)	1058
Bsp119I	TTCGAA	1 cut(s)	1395
Bsp1286I	GDGCHC	3 cut(s)	1566, 2603, 2630
Bsp143I	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
BspANI	GGCC	7 cut(s)	714, 1872, 2660, 2705, 2842, 2894, 3028
BspCNI	CTCAG	5 cut(s)	1857, 2776, 2859, 2878, 3190
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	3 cut(s)	167, 386, 1158
BspHI	TCATGA	2 cut(s)	322, 1227
BspMI	ACCTGC	1 cut(s)	630
BspOI	GCTAGC	2 cut(s)	1146, 1544
BspPI	GGATC	3 cut(s)	2747, 2760, 2930
BspQI	GCTCTTC	2 cut(s)	2618, 2856
BspT104I	TTCGAA	1 cut(s)	1395
BspT107I	GGYRCC	3 cut(s)	604, 2309, 2600
BspTNI	GGTCTC	3 cut(s)	473, 507, 630
BsrBI	CCGCTC	2 cut(s)	1225, 1749
BsrDI	GCAATG	4 cut(s)	366, 592, 1907, 1959
BsrFI	RCCGGY	2 cut(s)	361, 490
BsrI	ACTGG	5 cut(s)	291, 2217, 2318, 2657, 3121
BssAI	RCCGGY	2 cut(s)	361, 490
BssMI	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
BssNI	GRCGYC	2 cut(s)	2030, 2796
BssSI	CACGAG	1 cut(s)	1920
BssT1I	CCWWGG	3 cut(s)	463, 2353, 2661
Bst2BI	CACGAG	1 cut(s)	1920
Bst2UI	CCWGG	5 cut(s)	883, 1703, 1875, 2181, 2882
Bst4CI	ACNGT	7 cut(s)	158, 183, 453, 845, 938, 1558, 3137
Bst6I	CTCTTC	4 cut(s)	1133, 2529, 2618, 2856
BstACI	GRCGYC	2 cut(s)	2030, 2796
BstBI	TTCGAA	1 cut(s)	1395
BstDEI	CTNAG	8 cut(s)	272, 1774, 1844, 2458, 2784, 2867, 2886, 3198
BstDSI	CCRYGG	3 cut(s)	384, 609, 1156
BstEII	GGTNACC	1 cut(s)	296
BstFNI	CGCG	3 cut(s)	167, 386, 1158
BstHHI	GCGC	1 cut(s)	3086
BstKTI	GATC	8 cut(s)	644, 2002, 2223, 2457, 2755, 2926, 2938, 3204
BstMBI	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
BstNI	CCWGG	5 cut(s)	883, 1703, 1875, 2181, 2882
BstNSI	RCATGY	4 cut(s)	309, 339, 1507, 3007
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	8 cut(s)	881, 1057, 1058, 1089, 1701, 1873, 2179, 2880
BstSFI	CTRYAG	2 cut(s)	1680, 2152
BstSLI	GKGCMC	1 cut(s)	2603
BstUI	CGCG	3 cut(s)	167, 386, 1158
BstV1I	GCAGC	3 cut(s)	1480, 2573, 2972
BstV2I	GAAGAC	3 cut(s)	153, 476, 1470
BstX2I	RGATCY	1 cut(s)	2752
BstYI	RGATCY	1 cut(s)	2752
Bsu15I	ATCGAT	1 cut(s)	102
Bsu36I	CCTNAGG	1 cut(s)	272
BsuI	GTATCC	2 cut(s)	1827, 2102
BsuRI	GGCC	7 cut(s)	714, 1872, 2660, 2705, 2842, 2894, 3028
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	3 cut(s)	384, 609, 1156
BtgZI	GCGATG	1 cut(s)	2390
BtsI	GCAGTG	5 cut(s)	346, 1008, 1194, 1381, 2853
BtsIMutI	CAGTG	9 cut(s)	346, 763, 1008, 1194, 1381, 2210, 2251, 2853, 3105
BveI	ACCTGC	1 cut(s)	630
CciI	TCATGA	2 cut(s)	322, 1227
CfoI	GCGC	1 cut(s)	3086
Cfr10I	RCCGGY	2 cut(s)	361, 490
Cfr13I	GGNCC	9 cut(s)	224, 400, 713, 1623, 1871, 2143, 2484, 2892, 3070
Cfr42I	CCGCGG	2 cut(s)	387, 1159
Cfr9I	CCCGGG	1 cut(s)	1058
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	4 cut(s)	17, 1231, 1499, 2038
CsiI	ACCWGGT	1 cut(s)	1701
Csp6I	GTAC	7 cut(s)	533, 605, 1423, 1477, 1588, 2436, 2578
CspAI	ACCGGT	1 cut(s)	361
CspCI	CAANNNNNGTGG	3 cut(s)	2302, 2337, 3196
CviQI	GTAC	7 cut(s)	533, 605, 1423, 1477, 1588, 2436, 2578
DdeI	CTNAG	8 cut(s)	272, 1774, 1844, 2458, 2784, 2867, 2886, 3198
DpnI	GATC	8 cut(s)	643, 2001, 2222, 2456, 2754, 2925, 2937, 3203
DpnII	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
DraIII	CACNNNGTG	1 cut(s)	791
DrdI	GACNNNNNNGTC	2 cut(s)	2182, 2788
DseDI	GACNNNNNNGTC	2 cut(s)	2182, 2788
EaeI	YGGCCR	3 cut(s)	2658, 2703, 3026
Eam1104I	CTCTTC	4 cut(s)	1133, 2529, 2618, 2856
EarI	CTCTTC	4 cut(s)	1133, 2529, 2618, 2856
EciI	GGCGGA	4 cut(s)	477, 810, 976, 1455
Ecl136II	GAGCTC	1 cut(s)	1564
Eco130I	CCWWGG	3 cut(s)	463, 2353, 2661
Eco24I	GRGCYC	1 cut(s)	1566
Eco31I	GGTCTC	3 cut(s)	473, 507, 630
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	6 cut(s)	224, 400, 1623, 2143, 2484, 3070
Eco53kI	GAGCTC	1 cut(s)	1564
Eco57I	CTGAAG	8 cut(s)	39, 600, 1165, 1341, 1482, 2227, 2528, 3129
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	1058
Eco91I	GGTNACC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	1564
EcoO109I	RGGNCCY	2 cut(s)	2143, 2484
EcoO65I	GGTNACC	1 cut(s)	296
EcoRI	GAATTC	4 cut(s)	740, 1031, 1044, 1235
EcoRII	CCWGG	5 cut(s)	881, 1701, 1873, 2179, 2880
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	3 cut(s)	463, 2353, 2661
EcoT22I	ATGCAT	4 cut(s)	1300, 2300, 3009, 3179
EcoT38I	GRGCYC	1 cut(s)	1566
ErhI	CCWWGG	3 cut(s)	463, 2353, 2661
FaqI	GGGAC	8 cut(s)	297, 983, 1269, 1502, 1609, 2497, 3127, 3199
FauI	CCCGC	2 cut(s)	391, 1022
FbaI	TGATCA	1 cut(s)	2923
FblI	GTMKAC	2 cut(s)	1683, 2799
Fnu4HI	GCNGC	8 cut(s)	387, 1159, 1223, 1494, 2033, 2229, 2562, 2961
FriOI	GRGCYC	1 cut(s)	1566
Fsp4HI	GCNGC	8 cut(s)	387, 1159, 1223, 1494, 2033, 2229, 2562, 2961
FspBI	CTAG	8 cut(s)	5, 221, 258, 480, 1143, 1541, 1689, 2565
GlaI	GCGC	1 cut(s)	3085
GluI	GCNGC	8 cut(s)	387, 1159, 1223, 1494, 2033, 2229, 2562, 2961
GsaI	CCCAGC	1 cut(s)	1290
GsuI	CTGGAG	4 cut(s)	308, 360, 1566, 2301
HaeIII	GGCC	7 cut(s)	714, 1872, 2660, 2705, 2842, 2894, 3028
HapII	CCGG	8 cut(s)	301, 362, 491, 824, 1059, 1091, 1470, 1480
HgaI	GACGC	4 cut(s)	17, 1231, 1499, 2038
HhaI	GCGC	1 cut(s)	3086
Hin1I	GRCGYC	2 cut(s)	2030, 2796
Hin6I	GCGC	1 cut(s)	3084
HinP1I	GCGC	1 cut(s)	3084
HincII	GTYRAC	3 cut(s)	91, 1246, 1935
HindII	GTYRAC	3 cut(s)	91, 1246, 1935
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	5 cut(s)	1428, 1685, 1730, 1965, 2345
HpaII	CCGG	8 cut(s)	301, 362, 491, 824, 1059, 1091, 1470, 1480
HphI	GGTGA	6 cut(s)	290, 356, 826, 944, 2009, 2603
Hpy166II	GTNNAC	9 cut(s)	91, 613, 1246, 1423, 1609, 1684, 1935, 2169, 2800
Hpy8I	GTNNAC	9 cut(s)	91, 613, 1246, 1423, 1609, 1684, 1935, 2169, 2800
Hpy99I	CGWCG	5 cut(s)	976, 1205, 1502, 2176, 2772
HpyAV	CCTTC	7 cut(s)	63, 492, 575, 660, 2590, 3083, 3104
HpyCH4III	ACNGT	7 cut(s)	158, 183, 453, 845, 938, 1558, 3137
HpyCH4IV	ACGT	4 cut(s)	234, 1737, 1806, 2796
HpyF3I	CTNAG	8 cut(s)	272, 1774, 1844, 2458, 2784, 2867, 2886, 3198
HpySE526I	ACGT	4 cut(s)	234, 1737, 1806, 2796
Hsp92I	GRCGYC	2 cut(s)	2030, 2796
HspAI	GCGC	1 cut(s)	3084
KflI	GGGWCCC	1 cut(s)	2484
KpnI	GGTACC	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	2923
KspI	CCGCGG	2 cut(s)	387, 1159
Kzo9I	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
LguI	GCTCTTC	2 cut(s)	2618, 2856
LmnI	GCTCC	4 cut(s)	213, 273, 1600, 1799
Lsp1109I	GCAGC	3 cut(s)	1480, 2573, 2972
LweI	GCATC	9 cut(s)	20, 1195, 1209, 1285, 1925, 1939, 2239, 2285, 2376
MabI	ACCWGGT	1 cut(s)	1701
MaeI	CTAG	8 cut(s)	5, 221, 258, 480, 1143, 1541, 1689, 2565
MaeII	ACGT	4 cut(s)	234, 1737, 1806, 2796
MaeIII	GTNAC	8 cut(s)	296, 574, 932, 938, 1135, 1655, 1738, 2492
MalI	GATC	8 cut(s)	643, 2001, 2222, 2456, 2754, 2925, 2937, 3203
MbiI	CCGCTC	2 cut(s)	1225, 1749
MboI	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
MflI	RGATCY	1 cut(s)	2752
MhlI	GDGCHC	3 cut(s)	1566, 2603, 2630
MlsI	TGGCCA	2 cut(s)	2660, 2705
MluNI	TGGCCA	2 cut(s)	2660, 2705
MlyI	GAGTC	3 cut(s)	1679, 1739, 1959
MmeI	TCCRAC	2 cut(s)	475, 1143
Mox20I	TGGCCA	2 cut(s)	2660, 2705
Mph1103I	ATGCAT	4 cut(s)	1300, 2300, 3009, 3179
MroXI	GAANNNNTTC	2 cut(s)	1067, 2978
MscI	TGGCCA	2 cut(s)	2660, 2705
MseI	TTAA	2 cut(s)	419, 1893
MslI	CAYNNNNRTG	9 cut(s)	1472, 1719, 2090, 2194, 2589, 2616, 2726, 2910, 3012
Msp20I	TGGCCA	2 cut(s)	2660, 2705
MspA1I	CMGCKG	2 cut(s)	386, 1158
MspI	CCGG	8 cut(s)	301, 362, 491, 824, 1059, 1091, 1470, 1480
MspR9I	CCNGG	8 cut(s)	883, 1059, 1060, 1091, 1703, 1875, 2181, 2882
MvaI	CCWGG	5 cut(s)	883, 1703, 1875, 2181, 2882
MvnI	CGCG	3 cut(s)	167, 386, 1158
NciI	CCSGG	3 cut(s)	1059, 1060, 1091
NdeII	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
NheI	GCTAGC	2 cut(s)	1142, 1540
NmeAIII	GCCGAG	1 cut(s)	2989
NmuCI	GTSAC	4 cut(s)	296, 932, 1135, 2492
NsiI	ATGCAT	4 cut(s)	1300, 2300, 3009, 3179
NspI	RCATGY	4 cut(s)	309, 339, 1507, 3007
NspV	TTCGAA	1 cut(s)	1395
OliI	CACNNNNGTG	1 cut(s)	2726
PaeI	GCATGC	2 cut(s)	339, 3007
PagI	TCATGA	2 cut(s)	322, 1227
PasI	CCCWGGG	1 cut(s)	2180
PciI	ACATGT	2 cut(s)	305, 1503
PciSI	GCTCTTC	2 cut(s)	2618, 2856
PcsI	WCGNNNNNNNCGW	1 cut(s)	1497
PdmI	GAANNNNTTC	2 cut(s)	1067, 2978
PfeI	GAWTC	2 cut(s)	1428, 2345
PflMI	CCANNNNNTGG	2 cut(s)	888, 2426
PinAI	ACCGGT	1 cut(s)	361
PkrI	GCNGC	8 cut(s)	388, 1160, 1224, 1495, 2034, 2230, 2563, 2962
PleI	GAGTC	3 cut(s)	1679, 1738, 1959
PpsI	GAGTC	3 cut(s)	1679, 1738, 1959
PpuMI	RGGWCCY	2 cut(s)	2143, 2484
PscI	ACATGT	2 cut(s)	305, 1503
Psp124BI	GAGCTC	1 cut(s)	1566
Psp5II	RGGWCCY	2 cut(s)	2143, 2484
Psp6I	CCWGG	5 cut(s)	881, 1701, 1873, 2179, 2880
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	1286
PspGI	CCWGG	5 cut(s)	881, 1701, 1873, 2179, 2880
PspPI	GGNCC	9 cut(s)	224, 400, 713, 1623, 1871, 2143, 2484, 2892, 3070
PspPPI	RGGWCCY	2 cut(s)	2143, 2484
PsuI	RGATCY	1 cut(s)	2752
RsaI	GTAC	7 cut(s)	534, 606, 1424, 1478, 1589, 2437, 2579
RsaNI	GTAC	7 cut(s)	533, 605, 1423, 1477, 1588, 2436, 2578
RseI	CAYNNNNRTG	9 cut(s)	1472, 1719, 2090, 2194, 2589, 2616, 2726, 2910, 3012
SacI	GAGCTC	1 cut(s)	1566
SacII	CCGCGG	2 cut(s)	387, 1159
SapI	GCTCTTC	2 cut(s)	2618, 2856
SaqAI	TTAA	2 cut(s)	419, 1893
SatI	GCNGC	8 cut(s)	387, 1159, 1223, 1494, 2033, 2229, 2562, 2961
Sau3AI	GATC	8 cut(s)	641, 1999, 2220, 2454, 2752, 2923, 2935, 3201
Sau96I	GGNCC	9 cut(s)	224, 400, 713, 1623, 1871, 2143, 2484, 2892, 3070
ScaI	AGTACT	1 cut(s)	1589
SchI	GAGTC	3 cut(s)	1679, 1739, 1959
ScrFI	CCNGG	8 cut(s)	883, 1059, 1060, 1091, 1703, 1875, 2181, 2882
SduI	GDGCHC	3 cut(s)	1566, 2603, 2630
SexAI	ACCWGGT	1 cut(s)	1701
SfaNI	GCATC	9 cut(s)	20, 1195, 1209, 1285, 1925, 1939, 2239, 2285, 2376
SfcI	CTRYAG	2 cut(s)	1680, 2152
Sfr303I	CCGCGG	2 cut(s)	387, 1159
SfuI	TTCGAA	1 cut(s)	1395
SgrBI	CCGCGG	2 cut(s)	387, 1159
SinI	GGWCC	6 cut(s)	224, 400, 1623, 2143, 2484, 3070
SmaI	CCCGGG	1 cut(s)	1060
SmiMI	CAYNNNNRTG	9 cut(s)	1472, 1719, 2090, 2194, 2589, 2616, 2726, 2910, 3012
SmlI	CTYRAG	1 cut(s)	3056
SmoI	CTYRAG	1 cut(s)	3056
SphI	GCATGC	2 cut(s)	339, 3007
SspMI	CTAG	8 cut(s)	5, 221, 258, 480, 1143, 1541, 1689, 2565
SstI	GAGCTC	1 cut(s)	1566
StyD4I	CCNGG	8 cut(s)	881, 1057, 1058, 1089, 1701, 1873, 2179, 2880
StyI	CCWWGG	3 cut(s)	463, 2353, 2661
TaaI	ACNGT	7 cut(s)	158, 183, 453, 845, 938, 1558, 3137
TaiI	ACGT	4 cut(s)	237, 1740, 1809, 2799
TaqI	TCGA	8 cut(s)	70, 102, 153, 840, 866, 1395, 1575, 1968
TaqII	GACCGA	4 cut(s)	241, 654, 1611, 1952
TatI	WGTACW	2 cut(s)	1587, 2435
TauI	GCSGC	5 cut(s)	389, 1161, 1225, 2035, 2231
TfiI	GAWTC	2 cut(s)	1428, 2345
Tru1I	TTAA	2 cut(s)	419, 1893
Tru9I	TTAA	2 cut(s)	419, 1893
TscAI	CASTG	9 cut(s)	346, 763, 1015, 1201, 1381, 2217, 2251, 2853, 3112
TseFI	GTSAC	4 cut(s)	296, 932, 1135, 2492
TseI	GCWGC	3 cut(s)	1493, 2561, 2960
Tsp45I	GTSAC	4 cut(s)	296, 932, 1135, 2492
TspDTI	ATGAA	6 cut(s)	1060, 1086, 1297, 1380, 1649, 3050
TspGWI	ACGGA	4 cut(s)	960, 2184, 2390, 2480
TspMI	CCCGGG	1 cut(s)	1058
TspRI	CASTG	9 cut(s)	346, 763, 1015, 1201, 1381, 2217, 2251, 2853, 3112
Van91I	CCANNNNNTGG	2 cut(s)	888, 2426
VpaK11BI	GGWCC	6 cut(s)	224, 400, 1623, 2143, 2484, 3070
XapI	RAATTY	5 cut(s)	740, 1031, 1044, 1235, 1344
XceI	RCATGY	4 cut(s)	309, 339, 1507, 3007
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2526
XmaI	CCCGGG	1 cut(s)	1058
XmiI	GTMKAC	2 cut(s)	1683, 2799
XmnI	GAANNNNTTC	2 cut(s)	1067, 2978
XspI	CTAG	8 cut(s)	5, 221, 258, 480, 1143, 1541, 1689, 2565
ZraI	GACGTC	1 cut(s)	2797
ZrmI	AGTACT	1 cut(s)	1589
Zsp2I	ATGCAT	4 cut(s)	1300, 2300, 3009, 3179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.