Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

80448851 .. 80451700

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGAAGAACCTAACCAACAAATACCTTTGTACAGTAAATTCCATGAAACCAGTTCTTGGTCCTCTCTACCTTTCCTTGTTTCTGCACATCGTCGCCCAATTCGTGGCTGGTAATTCTCAACATATCTACACTCCGGTTGAAGATATCACCATTGCCTGTGGCAATTCCGGCACCCAAATCAATAAGTTTGATAACCGAACTTGGAGCGGAGATATCAACTCAGAATTTTGCCCCTTTGAACAAGACCAAGTTGGTAACAATACATCCCAAGTCAGAAAAGCACCATCATCGTCCTTCACAGGCAGAGTGCCGTACACCACCGCGAGGGTTTCTCACTCAACATTCACCTACAGATTTTCGTTAACTACGGGCCAGAAGTTCATACGCTTGTATTTCTACCATGCATCATATGCTGACTTTGACCGCTCCAAAGCCCTGTTTTCCGTTGAAGCAGGTGATTATACCCTTCTCCAAGATTTCAATGCTTCAGCCACTGTGGATGCTGCTGGGGTGGAGACGATATACAGAGAGTTCTGTTTGAACATTTATGATGGAGATCAGATTCTGAGCATTACATTCACTCCAAGCAAAGCCAAGCAGGCATATGCCTTTATCAATGGAATCGAAATTGTGTCCATGCCGACCTATCTTTACTACACTGCAGCTCAGAGCAATGCGGCTCATTATATAGGCGGGGGAGACAGATTTCCTATTCAGGAGAACACTGCTATGGAGATGGTTTACCGAATCAACATCGGTGGCAGCTCAGTCTCATCCAGTCAAGACACTGGAATGTACCGCAATTGGAATGGTGATGATGTGACCTACTTGGATGAATTAAGTAGAAGTCTAACCGTTTCACCGTCCAACCCAAGCATTCAACTCAAGTTTGCCAAAATACCTGAATACAGTGCGCCAAAAGAAGTTTATCAAACAGGCCGGTCAATTGACTCCAACAAGACAAACAACAAGAGCTACAATCTCACCTGGGAATTTCCTGTAGATTCTAACCGTCCCCACCTGGTTAGGCTACATTTCTGTGAGCTTGAGCCCGAAATTACCAAGATAGGAGAGCGGACTTTTCTAATTTACATAGGGAATCAAGCCGCGGATACAGCAGACATAGTCGAATGGAGTGGTGGAAATGGGATACCAGTATACAGAGACTACGTGGTGGTCTTGTCTAACCCAGTAAGGCAGAAGAATGTAAGTCTTTCTATCACACTGCAAGCATTCCAAATGGATTGGATGATTAAATACAAGAATGCAATGTTGAATGGGCTCGAAATCCTGAAATTGATCGACTCAAAAGGCCCTCAAGCCGGAAGCAGCACCAACCCGAAGCTGACACCGCTAAGCCCAAGAACTTCAAAGAGTTCAAGTTCTGCGCTTGCCATCGTTGCTGGTGTAGTTTCTAGCACAGTAGTATTTTCTGCCCTTGGATTCTTGATTTTCAGGCAAAGATGGAAAGTCAAGGACTCCGGCTCCAGCCACAGGACAATGAAGTTAACAATGACCCCCAGCTCATCTTCACCGTCATATTTGTGTCGCTACTTTTCACTGGCAGAGATCAAAGCCGCCACCAAGAACTTCAACCATACTTTCATTATTGGTGTTGGAGGATTCGGCAATGTGTACAAAGGATGCATCGATAGTGGAGCCACTCTCGTTGCAATTAAACGACTGAAACCTGAGTCATCCCAGGGTGCCCATGAGTTCAAGACAGAAATTGAGTTGCTCTCCCAACTTCGTCATCGCCATTTGGTTTCACTTATTGGATACTGTACTGATAAAGGTGAGATGATCTTGGTATATGATTACATGGCCCGTGGATCCCTCCGTGATCATCTCTACCACACCAATAACTCCACTCTTTCTTGGGAACAACGGCTTCAGATTTGTATTGGCACGGCTCAAGGGCTGCAGTACCTTCATGGAGGTGCCAAGGGAACCATCATTCACCGTGACGTGAAGAGCACAAACATCTTATTGGATGAGAAATGGGTGGCCAAGGTTTCAGATTTTGGGTTGTCAAAAATGGGGAACCCCAACATGTCCAAGACCCACATAAGCACGGTAGTGAAGGGCAGTTTCGGATATCTAGACCCAGAATACTACCGACGACAAAGATTAACTGAGAAGTCCGATGTGTACTCATTTGGTGTGGTTTTGTTTGAGGTACTATGTGCAAAGCCAGCTGTGATAAATACAGAGGAGATGAGGCAAATGAACTTATCTGAGTGGGCCAAAAGCTGTCATCACAAGGGGGAACTTGATCGAATCATCGACCCAAGCTTAACGGGTAACATTGCAACCGAGAGCTTGAATAAATTTGTTGATATTGCAATGAGCTGTGTGCATGAAAATGGTGTTGAGAGGCCGTCAATGGATGATGTTCTTAGGGGGCTTGAGCTTGCGTTGCAGATTCATCATAGCCAAGAGAGTGATATCAACTCCATTGAAAGGAAGGTAGAAACTGAAACAAGTAGTGGAGAACCAAGTTGTGCGACCAAAGATTCCATTACATGTATATCTGGGACAATCTTCTCTGAGATCAACCATCCAAGTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

858

Amino Acids

95.54

Weight (kDa)

7.58

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	52 - 431	1.6e-25	Malectin-like domain
Malectin	PF11721	247 - 401	2.4e-09	Malectin domain
Pkinase	PF00069	536 - 800	1.2e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	537 - 801	4.6e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	3 cut(s)	170, 1706, 1940
AccB7I	CCANNNNNTGG	2 cut(s)	56, 103
AccBSI	CCGCTC	3 cut(s)	207, 426, 1075
AccI	GTMKAC	1 cut(s)	1158
AccII	CGCG	2 cut(s)	323, 1109
AclWI	GGATC	2 cut(s)	1827, 1840
AcoI	YGGCCR	1 cut(s)	2007
AcsI	RAATTY	4 cut(s)	37, 224, 992, 2330
AcuI	CTGAAG	2 cut(s)	471, 1877
AfaI	GTAC	8 cut(s)	31, 314, 797, 1637, 1786, 1928, 2153, 2181
AfiI	CCNNNNNNNGG	6 cut(s)	56, 103, 324, 1322, 1494, 2463
AflIII	ACRYGT	2 cut(s)	2052, 2525
AjiI	CACGTC	1 cut(s)	1969
AjnI	CCWGG	3 cut(s)	986, 1020, 1701
AleI	CACNNNNGTG	1 cut(s)	2078
Alw21I	GWGCWC	1 cut(s)	1979
Alw26I	GTCTC	4 cut(s)	509, 693, 775, 1158
AlwI	GGATC	2 cut(s)	1827, 1840
AlwNI	CAGNNNCTG	2 cut(s)	494, 565
AoxI	GGCC	7 cut(s)	370, 937, 1312, 1824, 2007, 2244, 2378
ApeKI	GCWGC	5 cut(s)	503, 662, 762, 1329, 1921
ApoI	RAATTY	4 cut(s)	37, 224, 992, 2330
AspLEI	GCGC	2 cut(s)	916, 1390
AspS9I	GGNCC	5 cut(s)	59, 370, 1313, 1825, 2244
AsuHPI	GGTGA	9 cut(s)	139, 337, 467, 824, 852, 976, 1524, 1808, 1952
AvaII	GGWCC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	1711
BalI	TGGCCA	1 cut(s)	2009
BamHI	GGATCC	1 cut(s)	1832
BanI	GGYRCC	3 cut(s)	170, 1706, 1940
BanII	GRGCYC	2 cut(s)	1053, 1284
Bbv12I	GWGCWC	1 cut(s)	1979
BbvI	GCAGC	5 cut(s)	490, 674, 774, 1341, 1908
BccI	CCATC	7 cut(s)	292, 545, 730, 1403, 1458, 1961, 2568
BceAI	ACGGC	4 cut(s)	295, 1904, 1926, 2365
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BciT130I	CCWGG	3 cut(s)	988, 1022, 1703
BciVI	GTATCC	3 cut(s)	1105, 1143, 1772
BclI	TGATCA	1 cut(s)	1843
BcoDI	GTCTC	4 cut(s)	509, 693, 775, 1158
BfaI	CTAG	2 cut(s)	1416, 2102
BfmI	CTRYAG	4 cut(s)	349, 660, 999, 1922
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	3 cut(s)	1105, 1143, 1772
BglI	GCCNNNNNGGC	1 cut(s)	599
BisI	GCNGC	8 cut(s)	504, 663, 678, 763, 1107, 1330, 1578, 1922
BlpI	GCTNAGC	1 cut(s)	1355
BlsI	GCNGC	8 cut(s)	505, 664, 679, 764, 1108, 1331, 1579, 1923
Bme1390I	CCNGG	3 cut(s)	988, 1022, 1703
Bme18I	GGWCC	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	1969
BmgT120I	GGNCC	5 cut(s)	59, 370, 1313, 1825, 2244
BmiI	GGNNCC	8 cut(s)	172, 1486, 1660, 1708, 1834, 1942, 1951, 2045
BmrFI	CCNGG	3 cut(s)	988, 1022, 1703
BmrI	ACTGGG	1 cut(s)	1184
BmsI	GCATC	4 cut(s)	413, 490, 1634, 1656
BmuI	ACTGGG	1 cut(s)	1184
BplI	GAGNNNNNCTC	6 cut(s)	316, 348, 1650, 1682, 1724, 1756
BpmI	CTGGAG	1 cut(s)	1471
Bpu1102I	GCTNAGC	1 cut(s)	1355
BpuEI	CTTGAG	5 cut(s)	869, 1067, 1302, 1899, 2429
Bsa29I	ATCGAT	1 cut(s)	1650
BsaAI	YACGTR	1 cut(s)	1171
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	8 cut(s)	987, 1107, 1438, 1701, 1702, 1828, 1944, 2010
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	565, 595, 1469, 1499
Bsc4I	CCNNNNNNNGG	6 cut(s)	56, 103, 324, 1322, 1494, 2463
Bse118I	RCCGGY	1 cut(s)	939
Bse1I	ACTGG	6 cut(s)	50, 777, 793, 1154, 1190, 1566
Bse3DI	GCAATG	6 cut(s)	150, 679, 1275, 1636, 2307, 2352
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	3 cut(s)	988, 1022, 1703
BseCI	ATCGAT	1 cut(s)	1650
BseDI	CCNNGG	8 cut(s)	987, 1107, 1438, 1701, 1702, 1828, 1944, 2010
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	6 cut(s)	56, 103, 324, 1322, 1494, 2463
BseMI	GCAATG	6 cut(s)	150, 679, 1275, 1636, 2307, 2352
BseMII	CTCAG	8 cut(s)	234, 557, 680, 780, 1683, 2127, 2229, 2541
BseNI	ACTGG	6 cut(s)	50, 777, 793, 1154, 1190, 1566
BseRI	GAGGAG	1 cut(s)	2228
BseSI	GKGCMC	1 cut(s)	1711
BseXI	GCAGC	5 cut(s)	490, 674, 774, 1341, 1908
BseYI	CCCAGC	2 cut(s)	506, 1520
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	323, 1109
BshFI	GGCC	7 cut(s)	372, 939, 1314, 1826, 2009, 2246, 2380
BshNI	GGYRCC	3 cut(s)	170, 1706, 1940
BshVI	ATCGAT	1 cut(s)	1650
BsiHKAI	GWGCWC	1 cut(s)	1979
BsiSI	CCGG	5 cut(s)	134, 168, 940, 1323, 1482
BslFI	GGGAC	2 cut(s)	999, 2551
BslI	CCNNNNNNNGG	6 cut(s)	56, 103, 324, 1322, 1494, 2463
BsmAI	GTCTC	4 cut(s)	509, 693, 775, 1158
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	999, 2551
BsmI	GAATGC	3 cut(s)	876, 1232, 1270
BsnI	GGCC	7 cut(s)	372, 939, 1314, 1826, 2009, 2246, 2380
Bsp1286I	GDGCHC	4 cut(s)	1053, 1284, 1711, 1979
Bsp1407I	TGTACA	2 cut(s)	29, 1635
Bsp143I	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
Bsp1720I	GCTNAGC	1 cut(s)	1355
BspANI	GGCC	7 cut(s)	372, 939, 1314, 1826, 2009, 2246, 2380
BspCNI	CTCAG	8 cut(s)	233, 558, 679, 779, 1684, 2128, 2230, 2542
BspDI	ATCGAT	1 cut(s)	1650
BspFNI	CGCG	2 cut(s)	323, 1109
BspLI	GGNNCC	8 cut(s)	172, 1486, 1660, 1708, 1834, 1942, 1951, 2045
BspMAI	CTGCAG	2 cut(s)	664, 1926
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	1827, 1840
BspQI	GCTCTTC	1 cut(s)	1967
BspT107I	GGYRCC	3 cut(s)	170, 1706, 1940
BsrBI	CCGCTC	3 cut(s)	207, 426, 1075
BsrDI	GCAATG	6 cut(s)	150, 679, 1275, 1636, 2307, 2352
BsrFI	RCCGGY	1 cut(s)	939
BsrGI	TGTACA	2 cut(s)	29, 1635
BsrI	ACTGG	6 cut(s)	50, 777, 793, 1154, 1190, 1566
BssAI	RCCGGY	1 cut(s)	939
BssECI	CCNNGG	8 cut(s)	987, 1107, 1438, 1701, 1702, 1828, 1944, 2010
BssMI	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
BssNAI	GTATAC	1 cut(s)	1159
BssT1I	CCWWGG	3 cut(s)	1438, 1944, 2010
Bst1107I	GTATAC	1 cut(s)	1159
Bst2UI	CCWGG	3 cut(s)	988, 1022, 1703
Bst6I	CTCTTC	1 cut(s)	1967
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstAUI	TGTACA	2 cut(s)	29, 1635
BstBAI	YACGTR	1 cut(s)	1171
BstC8I	GCNNGC	5 cut(s)	600, 1230, 1392, 2196, 2415
BstDSI	CCRYGG	2 cut(s)	1107, 1828
BstFNI	CGCG	2 cut(s)	323, 1109
BstHHI	GCGC	2 cut(s)	916, 1390
BstKTI	GATC	8 cut(s)	559, 1302, 1572, 1806, 1835, 1846, 2278, 2556
BstMAI	GTCTC	4 cut(s)	509, 693, 775, 1158
BstMBI	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
BstMWI	GCNNNNNNNGC	8 cut(s)	168, 410, 599, 1115, 1351, 1400, 2195, 2419
BstNI	CCWGG	3 cut(s)	988, 1022, 1703
BstNSI	RCATGY	2 cut(s)	2056, 2529
BstSCI	CCNGG	3 cut(s)	986, 1020, 1701
BstSFI	CTRYAG	4 cut(s)	349, 660, 999, 1922
BstSLI	GKGCMC	1 cut(s)	1711
BstUI	CGCG	2 cut(s)	323, 1109
BstV1I	GCAGC	5 cut(s)	490, 674, 774, 1341, 1908
BstX2I	RGATCY	1 cut(s)	1832
BstXI	CCANNNNNNTGG	1 cut(s)	2567
BstYI	RGATCY	1 cut(s)	1832
BstZ17I	GTATAC	1 cut(s)	1159
Bsu15I	ATCGAT	1 cut(s)	1650
BsuI	GTATCC	3 cut(s)	1105, 1143, 1772
BsuRI	GGCC	7 cut(s)	372, 939, 1314, 1826, 2009, 2246, 2380
BsuTUI	ATCGAT	1 cut(s)	1650
BtgI	CCRYGG	2 cut(s)	1107, 1828
BtgZI	GCGATG	1 cut(s)	1739
BtrI	CACGTC	1 cut(s)	1969
BtsI	GCAGTG	3 cut(s)	657, 723, 1223
BtsIMutI	CAGTG	7 cut(s)	492, 657, 723, 786, 916, 1223, 1559
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	5 cut(s)	600, 1230, 1392, 2196, 2415
CaiI	CAGNNNCTG	2 cut(s)	494, 565
CfoI	GCGC	2 cut(s)	916, 1390
Cfr10I	RCCGGY	1 cut(s)	939
Cfr13I	GGNCC	5 cut(s)	59, 370, 1313, 1825, 2244
Cfr42I	CCGCGG	1 cut(s)	1110
ClaI	ATCGAT	1 cut(s)	1650
CsiI	ACCWGGT	1 cut(s)	1020
Csp6I	GTAC	8 cut(s)	30, 313, 796, 1636, 1785, 1927, 2152, 2180
CspCI	CAANNNNNGTGG	4 cut(s)	739, 774, 1651, 1686
CviAII	CATG	9 cut(s)	43, 401, 637, 1712, 1822, 1934, 2053, 2360, 2526
CviQI	GTAC	8 cut(s)	30, 313, 796, 1636, 1785, 1927, 2152, 2180
DpnI	GATC	8 cut(s)	558, 1301, 1571, 1805, 1834, 1845, 2277, 2555
DpnII	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
EaeI	YGGCCR	1 cut(s)	2007
Eam1104I	CTCTTC	1 cut(s)	1967
EarI	CTCTTC	1 cut(s)	1967
Eco130I	CCWWGG	3 cut(s)	1438, 1944, 2010
Eco24I	GRGCYC	2 cut(s)	1053, 1284
Eco32I	GATATC	4 cut(s)	145, 214, 2099, 2449
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	471, 1877
EcoO109I	RGGNCCY	1 cut(s)	1313
EcoRII	CCWGG	3 cut(s)	986, 1020, 1701
EcoRV	GATATC	4 cut(s)	145, 214, 2099, 2449
EcoT14I	CCWWGG	3 cut(s)	1438, 1944, 2010
EcoT22I	ATGCAT	2 cut(s)	406, 1649
EcoT38I	GRGCYC	2 cut(s)	1053, 1284
ErhI	CCWWGG	3 cut(s)	1438, 1944, 2010
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	9 cut(s)	46, 404, 640, 1715, 1825, 1937, 2056, 2363, 2529
FaqI	GGGAC	2 cut(s)	999, 2551
FatI	CATG	9 cut(s)	42, 400, 636, 1711, 1821, 1933, 2052, 2359, 2525
FauI	CCCGC	1 cut(s)	686
FauNDI	CATATG	2 cut(s)	409, 604
FbaI	TGATCA	1 cut(s)	1843
FblI	GTMKAC	1 cut(s)	1158
Fnu4HI	GCNGC	8 cut(s)	504, 663, 678, 763, 1107, 1330, 1578, 1922
FriOI	GRGCYC	2 cut(s)	1053, 1284
Fsp4HI	GCNGC	8 cut(s)	504, 663, 678, 763, 1107, 1330, 1578, 1922
FspBI	CTAG	2 cut(s)	1416, 2102
GlaI	GCGC	2 cut(s)	915, 1389
GluI	GCNGC	8 cut(s)	504, 663, 678, 763, 1107, 1330, 1578, 1922
GsaI	CCCAGC	2 cut(s)	510, 1524
GsuI	CTGGAG	1 cut(s)	1471
HaeIII	GGCC	7 cut(s)	372, 939, 1314, 1826, 2009, 2246, 2380
HapII	CCGG	5 cut(s)	134, 168, 940, 1323, 1482
HhaI	GCGC	2 cut(s)	916, 1390
Hin1II	CATG	9 cut(s)	46, 404, 640, 1715, 1825, 1937, 2056, 2363, 2529
Hin6I	GCGC	2 cut(s)	914, 1388
HinP1I	GCGC	2 cut(s)	914, 1388
HincII	GTYRAC	2 cut(s)	363, 1509
HindII	GTYRAC	2 cut(s)	363, 1509
HindIII	AAGCTT	1 cut(s)	2293
HpaI	GTTAAC	2 cut(s)	363, 1509
HpaII	CCGG	5 cut(s)	134, 168, 940, 1323, 1482
HphI	GGTGA	9 cut(s)	139, 337, 467, 824, 852, 976, 1524, 1808, 1952
Hpy166II	GTNNAC	7 cut(s)	315, 363, 742, 1159, 1509, 1636, 2152
Hpy188III	TCNNGA	6 cut(s)	716, 782, 1291, 1447, 1720, 2102
Hpy8I	GTNNAC	7 cut(s)	315, 363, 742, 1159, 1509, 1636, 2152
Hpy99I	CGWCG	2 cut(s)	95, 2124
HpyAV	CCTTC	5 cut(s)	304, 476, 1940, 2077, 2461
HpyCH4IV	ACGT	2 cut(s)	1170, 1968
HpyF10VI	GCNNNNNNNGC	8 cut(s)	168, 410, 599, 1115, 1351, 1400, 2195, 2419
HpySE526I	ACGT	2 cut(s)	1170, 1968
Hsp92II	CATG	9 cut(s)	46, 404, 640, 1715, 1825, 1937, 2056, 2363, 2529
HspAI	GCGC	2 cut(s)	914, 1388
Ksp22I	TGATCA	1 cut(s)	1843
KspAI	GTTAAC	2 cut(s)	363, 1509
KspI	CCGCGG	1 cut(s)	1110
Kzo9I	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
LguI	GCTCTTC	1 cut(s)	1967
LmnI	GCTCC	4 cut(s)	204, 431, 1490, 1658
Lsp1109I	GCAGC	5 cut(s)	490, 674, 774, 1341, 1908
LweI	GCATC	4 cut(s)	413, 490, 1634, 1656
MabI	ACCWGGT	1 cut(s)	1020
MaeI	CTAG	2 cut(s)	1416, 2102
MaeII	ACGT	2 cut(s)	1170, 1968
MaeIII	GTNAC	4 cut(s)	254, 820, 1964, 2303
MalI	GATC	8 cut(s)	558, 1301, 1571, 1805, 1834, 1845, 2277, 2555
MbiI	CCGCTC	3 cut(s)	207, 426, 1075
MboI	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
MboII	GAAGA	6 cut(s)	16, 152, 1213, 1521, 1984, 2536
MfeI	CAATTG	2 cut(s)	802, 945
MflI	RGATCY	1 cut(s)	1832
MhlI	GDGCHC	4 cut(s)	1053, 1284, 1711, 1979
MlsI	TGGCCA	1 cut(s)	2009
MluNI	TGGCCA	1 cut(s)	2009
MlyI	GAGTC	4 cut(s)	944, 1298, 1472, 1703
MmeI	TCCRAC	3 cut(s)	891, 978, 1597
Mox20I	TGGCCA	1 cut(s)	2009
Mph1103I	ATGCAT	2 cut(s)	406, 1649
MscI	TGGCCA	1 cut(s)	2009
MseI	TTAA	7 cut(s)	362, 839, 1254, 1508, 1677, 2132, 2297
MslI	CAYNNNNRTG	8 cut(s)	728, 791, 1038, 1543, 1938, 2078, 2364, 2565
Msp20I	TGGCCA	1 cut(s)	2009
MspA1I	CMGCKG	2 cut(s)	1109, 2198
MspI	CCGG	5 cut(s)	134, 168, 940, 1323, 1482
MspR9I	CCNGG	3 cut(s)	988, 1022, 1703
MunI	CAATTG	2 cut(s)	802, 945
Mva1269I	GAATGC	3 cut(s)	876, 1232, 1270
MvaI	CCWGG	3 cut(s)	988, 1022, 1703
MvnI	CGCG	2 cut(s)	323, 1109
MwoI	GCNNNNNNNGC	8 cut(s)	168, 410, 599, 1115, 1351, 1400, 2195, 2419
NdeI	CATATG	2 cut(s)	409, 604
NdeII	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
NlaIII	CATG	9 cut(s)	46, 404, 640, 1715, 1825, 1937, 2056, 2363, 2529
NlaIV	GGNNCC	8 cut(s)	172, 1486, 1660, 1708, 1834, 1942, 1951, 2045
NmuCI	GTSAC	2 cut(s)	820, 1964
NsiI	ATGCAT	2 cut(s)	406, 1649
NspI	RCATGY	2 cut(s)	2056, 2529
OliI	CACNNNNGTG	1 cut(s)	2078
PaqCI	CACCTGC	1 cut(s)	443
PasI	CCCWGGG	1 cut(s)	1702
PciI	ACATGT	2 cut(s)	2052, 2525
PciSI	GCTCTTC	1 cut(s)	1967
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	3 cut(s)	876, 1232, 1270
PflFI	GACNNNGTC	1 cut(s)	1124
PflMI	CCANNNNNTGG	2 cut(s)	56, 103
PkrI	GCNGC	8 cut(s)	505, 664, 679, 764, 1108, 1331, 1579, 1923
PleI	GAGTC	4 cut(s)	944, 1298, 1472, 1702
PpsI	GAGTC	4 cut(s)	944, 1298, 1472, 1702
Ppu21I	YACGTR	1 cut(s)	1171
PscI	ACATGT	2 cut(s)	2052, 2525
Psp6I	CCWGG	3 cut(s)	986, 1020, 1701
PspFI	CCCAGC	2 cut(s)	506, 1520
PspGI	CCWGG	3 cut(s)	986, 1020, 1701
PspN4I	GGNNCC	8 cut(s)	172, 1486, 1660, 1708, 1834, 1942, 1951, 2045
PspPI	GGNCC	5 cut(s)	59, 370, 1313, 1825, 2244
PstI	CTGCAG	2 cut(s)	664, 1926
PstNI	CAGNNNCTG	2 cut(s)	494, 565
PsuI	RGATCY	1 cut(s)	1832
PsyI	GACNNNGTC	1 cut(s)	1124
PvuII	CAGCTG	1 cut(s)	2198
RsaI	GTAC	8 cut(s)	31, 314, 797, 1637, 1786, 1928, 2153, 2181
RsaNI	GTAC	8 cut(s)	30, 313, 796, 1636, 1785, 1927, 2152, 2180
RseI	CAYNNNNRTG	8 cut(s)	728, 791, 1038, 1543, 1938, 2078, 2364, 2565
SacII	CCGCGG	1 cut(s)	1110
SapI	GCTCTTC	1 cut(s)	1967
SaqAI	TTAA	7 cut(s)	362, 839, 1254, 1508, 1677, 2132, 2297
SatI	GCNGC	8 cut(s)	504, 663, 678, 763, 1107, 1330, 1578, 1922
Sau3AI	GATC	8 cut(s)	556, 1299, 1569, 1803, 1832, 1843, 2275, 2553
Sau96I	GGNCC	5 cut(s)	59, 370, 1313, 1825, 2244
SchI	GAGTC	4 cut(s)	944, 1298, 1472, 1703
ScrFI	CCNGG	3 cut(s)	988, 1022, 1703
SduI	GDGCHC	4 cut(s)	1053, 1284, 1711, 1979
SexAI	ACCWGGT	1 cut(s)	1020
SfaNI	GCATC	4 cut(s)	413, 490, 1634, 1656
SfcI	CTRYAG	4 cut(s)	349, 660, 999, 1922
Sfr303I	CCGCGG	1 cut(s)	1110
SgrBI	CCGCGG	1 cut(s)	1110
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	8 cut(s)	728, 791, 1038, 1543, 1938, 2078, 2364, 2565
SmlI	CTYRAG	5 cut(s)	884, 1046, 1317, 1914, 2408
SmoI	CTYRAG	5 cut(s)	884, 1046, 1317, 1914, 2408
SspMI	CTAG	2 cut(s)	1416, 2102
StyD4I	CCNGG	3 cut(s)	986, 1020, 1701
StyI	CCWWGG	3 cut(s)	1438, 1944, 2010
TaiI	ACGT	2 cut(s)	1173, 1971
TaqI	TCGA	7 cut(s)	624, 1128, 1284, 1302, 1650, 2278, 2286
TatI	WGTACW	4 cut(s)	29, 1635, 1784, 2151
TauI	GCSGC	3 cut(s)	680, 1109, 1580
Tru1I	TTAA	7 cut(s)	362, 839, 1254, 1508, 1677, 2132, 2297
Tru9I	TTAA	7 cut(s)	362, 839, 1254, 1508, 1677, 2132, 2297
TscAI	CASTG	7 cut(s)	499, 664, 730, 793, 916, 1230, 1566
TseFI	GTSAC	2 cut(s)	820, 1964
TseI	GCWGC	5 cut(s)	503, 662, 762, 1329, 1921
Tsp45I	GTSAC	2 cut(s)	820, 1964
TspGWI	ACGGA	2 cut(s)	433, 1829
TspRI	CASTG	7 cut(s)	499, 664, 730, 793, 916, 1230, 1566
Tth111I	GACNNNGTC	1 cut(s)	1124
Van91I	CCANNNNNTGG	2 cut(s)	56, 103
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	4 cut(s)	37, 224, 992, 2330
XbaI	TCTAGA	1 cut(s)	2101
XceI	RCATGY	2 cut(s)	2056, 2529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	1158
XspI	CTAG	2 cut(s)	1416, 2102
Zsp2I	ATGCAT	2 cut(s)	406, 1649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.