RchiOBHm_Chr4g0400291

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
17852682 .. 17853350
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37234

Sequence Viewer

Length: 669 bp
ATGGAGAGTGACTCACGCCAACAGCTTATAGTTGCATATTTAGTATTCTTTTTGCAGCATTTCTTTACAATGTTTATAGCTATATATTTGCTATTCCTTATGGACTATTTTTCCTTTGTCAAAGTTCCAAAATACTTTGCTCCAAAACTAGTTTACAGAACAGGTCGGTCAACGGGGATGATCGAAGCCACCGACGAGAGCTATGGCCTCACATGGGTATTTCCCTTAGATCCCAAGTTTTATTACCTGGTGAGACTCCATTTCTGTGAGATTCGAAACAGAGAGCGATGGTTTAAAATCTACTTGGCCAATCAAACCGCAGATTTCATCCGATGGAGTCGAGGAAATGGGAATCCAGTTTACAAAGACTACATTGTGGGCATGTTCATGCCTCCGGTAGGAAGCCAGAAGAAAGTTAACCTATTTCTCGTACTTTCACCTCTCCAGATTGCCTATGCTGACAGCAATGCCATGTTGAACGGGCTGGAAATCTTCAAGCTCAGTGACTCGAGTGGGAATCTCATCGGACCCAACCCTGATCCACCACAATCGCAGCCCACGTCACAAAACCTAGATGATACTGAGAATAAGAAGTCGACTCCCATGGTTGCTATCGTTGCTGGCTTCATTACGCTCTCTGTTCTCATATTCTTGGTTTCGAGGAGATGA

Protein Analysis

222

Amino Acids

25.61

Weight (kDa)

9.08

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 43 - 166 6.8e-09 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000121)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 596
AciI CCGC 1 cut(s) 318
AclWI GGATC 2 cut(s) 224, 533
AcoI YGGCCR 1 cut(s) 306
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 214, 398
AgsI TTSAA 2 cut(s) 478, 496
AhlI ACTAGT 1 cut(s) 148
AjiI CACGTC 1 cut(s) 561
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 4 cut(s) 25, 80, 201, 499
AluI AGCT 4 cut(s) 25, 80, 201, 499
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 2 cut(s) 224, 533
Ama87I CYCGRG 1 cut(s) 508
AoxI GGCC 2 cut(s) 205, 306
ApeKI GCWGC 2 cut(s) 55, 553
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 262, 429
AsuII TTCGAA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 508
AvaII GGWCC 1 cut(s) 527
BalI TGGCCA 1 cut(s) 308
BbvI GCAGC 2 cut(s) 67, 565
BccI CCATC 2 cut(s) 282, 327
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 247
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 2 cut(s) 149, 572
BisI GCNGC 2 cut(s) 56, 554
BlsI GCNGC 2 cut(s) 57, 555
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 508
BmgBI CACGTC 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 1 cut(s) 248
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 398
Bse1I ACTGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 2 cut(s) 183, 327
BseLI CCNNNNNNNGG 2 cut(s) 214, 398
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 2 cut(s) 514, 573
BseNI ACTGG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 67, 565
BshFI GGCC 2 cut(s) 207, 308
BsiHKCI CYCGRG 1 cut(s) 508
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 214, 398
BsmAI GTCTC 1 cut(s) 247
BsnI GGCC 2 cut(s) 207, 308
BsoBI CYCGRG 1 cut(s) 508
Bsp119I TTCGAA 1 cut(s) 274
Bsp143I GATC 3 cut(s) 180, 229, 538
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 1 cut(s) 318
BspANI GGCC 2 cut(s) 207, 308
BspCNI CTCAG 2 cut(s) 513, 574
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 2 cut(s) 224, 533
BspT104I TTCGAA 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 472
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 3 cut(s) 180, 229, 538
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 3 cut(s) 226, 500, 582
BstDSI CCRYGG 1 cut(s) 603
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 183, 327
BstKTI GATC 3 cut(s) 183, 232, 541
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 3 cut(s) 180, 229, 538
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 67, 565
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuRI GGCC 2 cut(s) 207, 308
BtgI CCRYGG 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 561
BtsCI GGATG 2 cut(s) 183, 327
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 622
Cfr13I GGNCC 1 cut(s) 527
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 431
CviAII CATG 5 cut(s) 213, 382, 388, 472, 604
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 3 cut(s) 226, 500, 582
DpnI GATC 3 cut(s) 182, 231, 540
DpnII GATC 3 cut(s) 180, 229, 538
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 5 cut(s) 216, 385, 391, 475, 607
FatI CATG 5 cut(s) 212, 381, 387, 471, 603
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 2 cut(s) 56, 554
FokI GGATG 2 cut(s) 190, 314
Fsp4HI GCNGC 2 cut(s) 56, 554
FspBI CTAG 2 cut(s) 149, 572
GluI GCNGC 2 cut(s) 56, 554
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 2 cut(s) 207, 308
HapII CCGG 1 cut(s) 395
Hin1II CATG 5 cut(s) 216, 385, 391, 475, 607
HincII GTYRAC 3 cut(s) 171, 418, 597
HindII GTYRAC 3 cut(s) 171, 418, 597
HinfI GANTC 8 cut(s) 11, 255, 271, 337, 352, 506, 517, 598
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 1 cut(s) 395
HphI GGTGA 2 cut(s) 262, 429
Hpy166II GTNNAC 5 cut(s) 154, 171, 361, 418, 597
Hpy188I TCNGA 2 cut(s) 332, 527
Hpy188III TCNNGA 1 cut(s) 445
Hpy8I GTNNAC 5 cut(s) 154, 171, 361, 418, 597
Hpy99I CGWCG 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 2 cut(s) 35, 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 3 cut(s) 226, 500, 582
HpySE526I ACGT 1 cut(s) 560
Hsp92II CATG 5 cut(s) 216, 385, 391, 475, 607
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 3 cut(s) 180, 229, 538
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 67, 565
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 2 cut(s) 149, 572
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 3 cut(s) 8, 503, 561
MalI GATC 3 cut(s) 182, 231, 540
MboI GATC 3 cut(s) 180, 229, 538
MboII GAAGA 2 cut(s) 421, 484
MflI RGATCY 1 cut(s) 229
MlsI TGGCCA 1 cut(s) 308
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 5 cut(s) 5, 249, 346, 500, 592
MnlI CCTC 5 cut(s) 218, 335, 402, 450, 654
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 294, 417
MslI CAYNNNNRTG 2 cut(s) 264, 386
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 617
NcoI CCATGG 1 cut(s) 603
NdeII GATC 3 cut(s) 180, 229, 538
NlaIII CATG 5 cut(s) 216, 385, 391, 475, 607
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 3 cut(s) 8, 503, 561
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 557
PfeI GAWTC 3 cut(s) 271, 352, 517
PkrI GCNGC 2 cut(s) 57, 555
PleI GAGTC 5 cut(s) 5, 249, 345, 500, 592
PpsI GAGTC 5 cut(s) 5, 249, 345, 500, 592
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 1 cut(s) 527
PspXI VCTCGAGB 1 cut(s) 508
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 264, 386
SalI GTCGAC 1 cut(s) 595
SaqAI TTAA 2 cut(s) 294, 417
SatI GCNGC 2 cut(s) 56, 554
Sau3AI GATC 3 cut(s) 180, 229, 538
Sau96I GGNCC 1 cut(s) 527
SchI GAGTC 5 cut(s) 5, 249, 346, 500, 592
ScrFI CCNGG 1 cut(s) 248
SexAI ACCWGGT 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 274
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 264, 386
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
SpeI ACTAGT 1 cut(s) 148
SsiI CCGC 1 cut(s) 318
SspMI CTAG 2 cut(s) 149, 572
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 603
TaiI ACGT 1 cut(s) 563
TaqI TCGA 6 cut(s) 183, 274, 340, 509, 596, 659
TaqII GACCGA 1 cut(s) 156
TfiI GAWTC 3 cut(s) 271, 352, 517
Tru1I TTAA 2 cut(s) 294, 417
Tru9I TTAA 2 cut(s) 294, 417
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 3 cut(s) 8, 503, 561
TseI GCWGC 2 cut(s) 55, 553
Tsp45I GTSAC 3 cut(s) 8, 503, 561
TspDTI ATGAA 3 cut(s) 316, 376, 616
TspRI CASTG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 396
XceI RCATGY 1 cut(s) 385
XhoI CTCGAG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 596
XspI CTAG 2 cut(s) 149, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.