Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

17942489 .. 17942905

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCCCCCTGGTCTTTACAATACTTCTTCAGCTAAAGTGGTAAACGCCCTCGTAGGCTTATATCCGATGGGAAACAATACAGCTCTGGAGATGGTGTACCGACTCAACATCGGCAGAGGCCCCATCTCGCCGAACGCAGACACCGGAATGTACCGGACTTGGGACACTGCCGACCAAATTTATTTGGATAATATAAGTAAAATATTCAGCTTGCCACTACGAAAAGATGCAATGGAGCTCAACTTCATCAAAGTTCCAAAATACTCTGCTCCAAAACCAGTTTACACAACAGGTCGGTCAATTAGGTGGGACGAAACCACCTACGAGACCTATAACCTCACAAGGGTATTTCCCTTAGATCCCAAGTTTTATTACCTGGTGAGACTCTATTTCTATGAGATTGGAGACAGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

138

Amino Acids

15.89

Weight (kDa)

7.83

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	2 cut(s)	98, 152
AfiI	CCNNNNNNNGG	2 cut(s)	160, 343
AjnI	CCWGG	2 cut(s)	7, 375
AluBI	AGCT	4 cut(s)	32, 83, 210, 238
AluI	AGCT	4 cut(s)	32, 83, 210, 238
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	3 cut(s)	320, 376, 399
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	414
AoxI	GGCC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	3 cut(s)	61, 85, 131
BciT130I	CCWGG	2 cut(s)	9, 377
BcoDI	GTCTC	3 cut(s)	320, 376, 399
Bme1390I	CCNGG	2 cut(s)	9, 377
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	9, 377
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	7
BsaWI	WCCGGW	2 cut(s)	143, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 343
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	9, 377
BseDI	CCNNGG	1 cut(s)	7
BseLI	CCNNNNNNNGG	2 cut(s)	160, 343
BseMI	GCAATG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	144, 154
BslFI	GGGAC	2 cut(s)	176, 323
BslI	CCNNNNNNNGG	2 cut(s)	160, 343
BsmAI	GTCTC	3 cut(s)	320, 376, 399
BsmFI	GGGAC	2 cut(s)	176, 323
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	2 cut(s)	9, 377
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	3 cut(s)	320, 376, 399
BstMBI	GATC	1 cut(s)	358
BstNI	CCWGG	2 cut(s)	9, 377
BstSCI	CCNGG	2 cut(s)	7, 375
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	119
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	97, 151
CviJI	RGCY	6 cut(s)	32, 57, 83, 120, 210, 238
CviKI_1	RGCY	6 cut(s)	32, 57, 83, 120, 210, 238
CviQI	GTAC	2 cut(s)	97, 151
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	7, 375
EcoT38I	GRGCYC	1 cut(s)	240
FaiI	YATR	4 cut(s)	61, 194, 333, 396
FaqI	GGGAC	2 cut(s)	176, 323
FriOI	GRGCYC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	2 cut(s)	144, 154
HinfI	GANTC	2 cut(s)	102, 384
HpaII	CCGG	2 cut(s)	144, 154
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	43, 97, 283
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	3 cut(s)	43, 97, 283
HpyCH4V	TGCA	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	2 cut(s)	235, 274
LpnPI	CCDG	8 cut(s)	21, 71, 157, 167, 276, 291, 362, 389
LweI	GCATC	1 cut(s)	217
MabI	ACCWGGT	1 cut(s)	375
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	2 cut(s)	177, 300
MlyI	GAGTC	2 cut(s)	96, 378
MnlI	CCTC	3 cut(s)	59, 110, 347
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	2 cut(s)	144, 154
MspR9I	CCNGG	2 cut(s)	9, 377
MvaI	CCWGG	2 cut(s)	9, 377
NdeII	GATC	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	96, 378
PpsI	GAGTC	2 cut(s)	96, 378
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	7, 375
PspGI	CCWGG	2 cut(s)	7, 375
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	98, 152
RsaNI	GTAC	2 cut(s)	97, 151
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	2 cut(s)	96, 378
ScrFI	CCNGG	2 cut(s)	9, 377
SduI	GDGCHC	1 cut(s)	240
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	177, 300
SspI	AATATT	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	7, 375
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	177, 300
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.