Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005425.1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

60810 .. 63365

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005425.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2556 bp

atgaaaccaattctcactctgcttttcctcctcctgtttgtgtatgttgtcaccctgttggtggccggagatttggcatctaggtacactccggtggaaaatatcacccttgcttgtggcacttatgggactgtcactggcccatatgatggcgcttatggcgcttattatagcactaatggcacttataatccaagaaattggagtggagatatcaattcgaaattatcgcccattggccgcagcaccaccacccaagtcaacacttcgatctccaattactatattgaagtaccatacgacacagcgcggctttctcactcggaatttacttacagattcaatctcaccgccggccaaaagttcatacggttgtacttctacccagattcctacaccaacttcaaccgctccaaagctcgcttctccatcaaagccggtgactttacccttcttgacaacttcagtgcttctgacactgctaatgcttctgggaaggagaagttatacagagaattctgtttgaacgttgacgaagaactgagtctaaagactttcaacatcacattcagtccaagcaaagatgcctacgcgtatattaacgctattgaaatcatgtcgatgccaaccagtctttactactctgcagccaaaagtgatgggtttcagtacgtcggaggcagccaactcaagtatcgcatcgaaaacagcactgctctgcagacgctctaccgactaaacattgctggtggatactcagactcattccatgatgaagacatgtaccgccagtgggatgcttttgataaaacgtacatggatggtttaagtgcaacaatcagcgtggaatcatacaactctacaatcgaacagctcaaatttgttaaaattcctgcgtactcagcaccagaatatgtttaccttacaggccggaccctggggatgaagaaatacatcaacaagagctacaatctcacctggatatttccggtagattcttcattccattaccttgtgaggctgcatttctgtgagtttgaagcaggttttacccagtccggggacagaaagtttcaaatcaacataaacagccaaacagttgaagaaggagcagacataatccaatggagtggtggaaatgggtttccagtttacagagactatgttgtgtacatgtctggccctgaaaatgaaaagaaggtaaatctctctctcactcttgcagcagatgagaagcgctcatataatgaggcaatcctgaatgggctcgaaatctttaaactacttgactcgaatgtctcatatgatgccccacgcaatcctgattcaccgcaactgaaaagaccaaaaaagtcgagtgagtcaactcctacggttgccattgttgctggtgtcatttccagcataattgtgttctcggtgatcggattcttggtcttcaggcgaggatggaaagctaaggactcaagatccagccacaggacgaagaagtcaatgaaggtctataagtcatctttaccgacttattgtcgtcatttttcactgccagagatcaaagtcgccactgaaaacttcaatgctacttctattattggagttggaggatttggcaatgtctacaaaggacggattgatggcaaggcaacccttgttgcaatcaagaggctaaaaccggattcatcacagggtgcccatgagtttaaaacagaaattgaattgctcacccaaatctgtcaccgccatttggtgtctttgattggatattgtaatgataaaggtgagatgatcttagtgtatgattacatggcacgtgggacactcagggaccatctctacaacactgagaacccacctcttccttggaaagaacggctacagatttgtattggcgcagcacaagggttgcagtaccttcatagtggtgccatgggcaccatcatccaccgtgacgtgaagagcactaacatcttattggatgaaaactggatggccaaggtttcagattttgggctgtcgaaaggcacgaatcacatgtccaaaacccacatcagcactctggtgaaaggcagtttcgggtatctggacccagaatatttccgaacacaacatctgactcctcaatcagacgtctactcattcggtgtagtgttgtgtgaagtcttgtgcgcgaggcctgctgtgatacatacggaggaaattaggcaagcaaacctggctgagtgggccaagagctgtcatcagaatggggaacttgatcaaatcattgatccaattttgagaggtaacatcacagccgagtgcctgaataagtttactgaggtagccatcagttgcatgcatgataatggagcagaacggccatccatgactgatgttgttagggggcttgagcttgccttgcagcttcagcagagtgcagaagggaatatcgactgcattgaaaggaatgtcgaaactgaaacaagcagtagtgagaaaagttgtgccaccaacgattccattaaatgcatatctgtgacaatcttctctgagattaacaacccaagtgggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

851

Amino Acids

95.48

Weight (kDa)

6.67

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AasI	GACNNNNNNGTC	2 cut(s)	1295, 1489
AatII	GACGTC	1 cut(s)	2130
Acc36I	ACCTGC	1 cut(s)	1034
AccB1I	GGYRCC	3 cut(s)	1688, 1922, 1931
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccBSI	CCGCTC	1 cut(s)	411
AccI	GTMKAC	2 cut(s)	1617, 2130
AccII	CGCG	3 cut(s)	310, 593, 2168
AciI	CCGC	7 cut(s)	241, 310, 351, 409, 787, 1331, 1738
AclI	AACGTT	1 cut(s)	528
AclWI	GGATC	2 cut(s)	1464, 2261
AcoI	YGGCCR	5 cut(s)	63, 238, 355, 1989, 2357
AcsI	RAATTY	4 cut(s)	326, 515, 878, 888
AcuI	CTGAAG	3 cut(s)	448, 1423, 2390
AcvI	CACGTG	1 cut(s)	1811
AcyI	GRCGYC	1 cut(s)	2127
AdeI	CACNNNGTG	1 cut(s)	1688
AfaI	GTAC	9 cut(s)	86, 294, 377, 671, 785, 815, 899, 1172, 1910
AfeI	AGCGCT	1 cut(s)	1238
AfiI	CCNNNNNNNGG	8 cut(s)	61, 149, 793, 937, 1059, 1060, 1479, 1744
AflIII	ACRYGT	4 cut(s)	591, 780, 1173, 2031
AhdI	GACNNNNNGTC	1 cut(s)	1527
AjiI	CACGTC	1 cut(s)	1951
AjnI	CCWGG	3 cut(s)	936, 977, 2211
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AleI	CACNNNNGTG	2 cut(s)	92, 2057
AluBI	AGCT	7 cut(s)	419, 874, 966, 1457, 2232, 2392, 2404
AluI	AGCT	7 cut(s)	419, 874, 966, 1457, 2232, 2392, 2404
Alw21I	GWGCWC	1 cut(s)	1961
Alw26I	GTCTC	2 cut(s)	1152, 1303
AlwI	GGATC	2 cut(s)	1464, 2261
Aor51HI	AGCGCT	1 cut(s)	1238
ApeKI	GCWGC	7 cut(s)	243, 647, 681, 1021, 1223, 1892, 2401
ApoI	RAATTY	4 cut(s)	326, 515, 878, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	2018, 2050
AspLEI	GCGC	6 cut(s)	155, 164, 310, 1239, 1892, 2168
AspS9I	GGNCC	6 cut(s)	140, 933, 1181, 1825, 2083, 2223
AsuC2I	CCSGG	1 cut(s)	1060
AsuII	TTCGAA	1 cut(s)	221
AvaII	GGWCC	3 cut(s)	933, 1825, 2083
BaeGI	GKGCMC	2 cut(s)	1693, 1934
BaeI	ACNNNNGTAYC	2 cut(s)	677, 710
BalI	TGGCCA	1 cut(s)	1991
BanI	GGYRCC	3 cut(s)	1688, 1922, 1931
BanII	GRGCYC	1 cut(s)	1269
BbrPI	CACGTG	1 cut(s)	1811
BbsI	GAAGAC	2 cut(s)	783, 1429
Bbv12I	GWGCWC	1 cut(s)	1961
BbvI	GCAGC	7 cut(s)	255, 659, 693, 1008, 1235, 1904, 2413
BceAI	ACGGC	2 cut(s)	1886, 2372
BciT130I	CCWGG	3 cut(s)	938, 979, 2213
BciVI	GTATCC	1 cut(s)	746
BclI	TGATCA	1 cut(s)	2254
BcnI	CCSGG	1 cut(s)	1060
BcoDI	GTCTC	2 cut(s)	1152, 1303
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	3 cut(s)	645, 719, 1874
BfoI	RGCGCY	3 cut(s)	156, 165, 1240
BfuAI	ACCTGC	1 cut(s)	1034
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	9 cut(s)	241, 244, 311, 648, 682, 1022, 1224, 1893, 2402
BlsI	GCNGC	9 cut(s)	242, 245, 312, 649, 683, 1023, 1225, 1894, 2403
Bme1390I	CCNGG	4 cut(s)	938, 979, 1060, 2213
Bme18I	GGWCC	3 cut(s)	933, 1825, 2083
BmeRI	GACNNNNNGTC	1 cut(s)	1527
BmgBI	CACGTC	1 cut(s)	1951
BmgT120I	GGNCC	6 cut(s)	140, 933, 1181, 1825, 2083, 2223
BmiI	GGNNCC	6 cut(s)	935, 1690, 1826, 1924, 1933, 2085
BmrFI	CCNGG	4 cut(s)	938, 979, 1060, 2213
BmrI	ACTGGG	1 cut(s)	1048
BmsI	GCATC	6 cut(s)	86, 574, 612, 708, 787, 1297
BmuI	ACTGGG	1 cut(s)	1048
BpiI	GAAGAC	2 cut(s)	783, 1429
BplI	GAGNNNNNCTC	2 cut(s)	1223, 1255
Bpu10I	CCTNAGC	1 cut(s)	1458
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	3 cut(s)	674, 1450, 2408
BpuMI	CCSGG	1 cut(s)	1060
BsaAI	YACGTR	1 cut(s)	1811
BsaHI	GRCGYC	1 cut(s)	2127
BsaJI	CCNNGG	6 cut(s)	936, 937, 1059, 1859, 1926, 1992
BsaWI	WCCGGW	3 cut(s)	91, 988, 1672
Bsc4I	CCNNNNNNNGG	8 cut(s)	61, 149, 793, 937, 1059, 1060, 1479, 1744
Bse118I	RCCGGY	2 cut(s)	353, 437
Bse1I	ACTGG	6 cut(s)	142, 630, 790, 1054, 1148, 1988
Bse3DI	GCAATG	2 cut(s)	741, 1618
BseBI	CCWGG	3 cut(s)	938, 979, 2213
BseDI	CCNNGG	6 cut(s)	936, 937, 1059, 1859, 1926, 1992
BseGI	GGATG	8 cut(s)	802, 826, 948, 1454, 1938, 1981, 1992, 2360
BseLI	CCNNNNNNNGG	8 cut(s)	61, 149, 793, 937, 1059, 1060, 1479, 1744
BseMI	GCAATG	2 cut(s)	741, 1618
BseMII	CTCAG	8 cut(s)	533, 771, 915, 1833, 1834, 2208, 2307, 2520
BseNI	ACTGG	6 cut(s)	142, 630, 790, 1054, 1148, 1988
BseRI	GAGGAG	2 cut(s)	20, 2106
BseSI	GKGCMC	2 cut(s)	1693, 1934
BseXI	GCAGC	7 cut(s)	255, 659, 693, 1008, 1235, 1904, 2413
BsgI	GTGCAG	1 cut(s)	2436
Bsh1236I	CGCG	3 cut(s)	310, 593, 2168
BshNI	GGYRCC	3 cut(s)	1688, 1922, 1931
BsiHKAI	GWGCWC	1 cut(s)	1961
BsiSI	CCGG	8 cut(s)	66, 92, 354, 438, 931, 989, 1059, 1673
BslFI	GGGAC	4 cut(s)	142, 1076, 1828, 1838
BslI	CCNNNNNNNGG	8 cut(s)	61, 149, 793, 937, 1059, 1060, 1479, 1744
BsmAI	GTCTC	2 cut(s)	1152, 1303
BsmFI	GGGAC	4 cut(s)	142, 1076, 1828, 1838
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	4 cut(s)	1269, 1693, 1934, 1961
Bsp1407I	TGTACA	1 cut(s)	1170
Bsp143I	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
Bsp19I	CCATGG	1 cut(s)	1926
BspACI	CCGC	7 cut(s)	241, 310, 351, 409, 787, 1331, 1738
BspCNI	CTCAG	8 cut(s)	534, 770, 914, 1833, 1834, 2209, 2308, 2521
BspFNI	CGCG	3 cut(s)	310, 593, 2168
BspLI	GGNNCC	6 cut(s)	935, 1690, 1826, 1924, 1933, 2085
BspMAI	CTGCAG	2 cut(s)	649, 723
BspMI	ACCTGC	1 cut(s)	1034
BspPI	GGATC	2 cut(s)	1464, 2261
BspQI	GCTCTTC	1 cut(s)	1949
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	3 cut(s)	1688, 1922, 1931
BsrBI	CCGCTC	1 cut(s)	411
BsrDI	GCAATG	2 cut(s)	741, 1618
BsrFI	RCCGGY	2 cut(s)	353, 437
BsrGI	TGTACA	1 cut(s)	1170
BsrI	ACTGG	6 cut(s)	142, 630, 790, 1054, 1148, 1988
BssAI	RCCGGY	2 cut(s)	353, 437
BssECI	CCNNGG	6 cut(s)	936, 937, 1059, 1859, 1926, 1992
BssMI	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
BssNI	GRCGYC	1 cut(s)	2127
BssT1I	CCWWGG	3 cut(s)	1859, 1926, 1992
Bst2UI	CCWGG	3 cut(s)	938, 979, 2213
Bst4CI	ACNGT	5 cut(s)	133, 372, 1099, 1375, 1946
Bst6I	CTCTTC	2 cut(s)	1860, 1949
BstACI	GRCGYC	1 cut(s)	2127
BstAUI	TGTACA	1 cut(s)	1170
BstBAI	YACGTR	1 cut(s)	1811
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	6 cut(s)	355, 421, 2175, 2205, 2336, 2394
BstDSI	CCRYGG	1 cut(s)	1926
BstF5I	GGATG	8 cut(s)	802, 826, 948, 1454, 1938, 1981, 1992, 2360
BstFNI	CGCG	3 cut(s)	310, 593, 2168
BstH2I	RGCGCY	3 cut(s)	156, 165, 1240
BstHHI	GCGC	6 cut(s)	155, 164, 310, 1239, 1892, 2168
BstKTI	GATC	7 cut(s)	273, 1425, 1472, 1554, 1788, 2257, 2269
BstMAI	GTCTC	2 cut(s)	1152, 1303
BstMBI	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
BstNI	CCWGG	3 cut(s)	938, 979, 2213
BstNSI	RCATGY	4 cut(s)	784, 1177, 2035, 2338
BstSCI	CCNGG	4 cut(s)	936, 977, 1058, 2211
BstSFI	CTRYAG	3 cut(s)	645, 719, 1874
BstSLI	GKGCMC	2 cut(s)	1693, 1934
BstUI	CGCG	3 cut(s)	310, 593, 2168
BstV1I	GCAGC	7 cut(s)	255, 659, 693, 1008, 1235, 1904, 2413
BstV2I	GAAGAC	2 cut(s)	783, 1429
BstX2I	RGATCY	1 cut(s)	1469
BstXI	CCANNNNNNTGG	2 cut(s)	201, 1130
BstYI	RGATCY	1 cut(s)	1469
BsuI	GTATCC	1 cut(s)	746
BtgI	CCRYGG	1 cut(s)	1926
BtrI	CACGTC	1 cut(s)	1951
BtsCI	GGATG	8 cut(s)	802, 826, 948, 1454, 1938, 1981, 1992, 2360
BtsI	GCAGTG	3 cut(s)	477, 711, 1541
BtsIMutI	CAGTG	8 cut(s)	135, 472, 477, 711, 797, 1541, 1563, 1839
BveI	ACCTGC	1 cut(s)	1034
Cac8I	GCNNGC	6 cut(s)	355, 421, 2175, 2205, 2336, 2394
CfoI	GCGC	6 cut(s)	155, 164, 310, 1239, 1892, 2168
Cfr10I	RCCGGY	2 cut(s)	353, 437
Cfr13I	GGNCC	6 cut(s)	140, 933, 1181, 1825, 2083, 2223
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	9 cut(s)	85, 293, 376, 670, 784, 814, 898, 1171, 1909
CspCI	CAANNNNNGTGG	3 cut(s)	825, 860, 2527
CviQI	GTAC	9 cut(s)	85, 293, 376, 670, 784, 814, 898, 1171, 1909
DpnI	GATC	7 cut(s)	272, 1424, 1471, 1553, 1787, 2256, 2268
DpnII	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
DraI	TTTAAA	2 cut(s)	1279, 1702
DraIII	CACNNNGTG	1 cut(s)	1688
DrdI	GACNNNNNNGTC	2 cut(s)	1295, 1489
DriI	GACNNNNNGTC	1 cut(s)	1527
DseDI	GACNNNNNNGTC	2 cut(s)	1295, 1489
EaeI	YGGCCR	5 cut(s)	63, 238, 355, 1989, 2357
Eam1104I	CTCTTC	2 cut(s)	1860, 1949
Eam1105I	GACNNNNNGTC	1 cut(s)	1527
EarI	CTCTTC	2 cut(s)	1860, 1949
Eco130I	CCWWGG	3 cut(s)	1859, 1926, 1992
Eco147I	AGGCCT	1 cut(s)	2173
Eco24I	GRGCYC	1 cut(s)	1269
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	3 cut(s)	933, 1825, 2083
Eco47III	AGCGCT	1 cut(s)	1238
Eco57I	CTGAAG	3 cut(s)	448, 1423, 2390
Eco72I	CACGTG	1 cut(s)	1811
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	936, 977, 2211
EcoRV	GATATC	1 cut(s)	214
EcoT14I	CCWWGG	3 cut(s)	1859, 1926, 1992
EcoT22I	ATGCAT	2 cut(s)	2340, 2510
EcoT38I	GRGCYC	1 cut(s)	1269
ErhI	CCWWGG	3 cut(s)	1859, 1926, 1992
FaqI	GGGAC	4 cut(s)	142, 1076, 1828, 1838
FauNDI	CATATG	2 cut(s)	145, 1303
FbaI	TGATCA	1 cut(s)	2254
FblI	GTMKAC	2 cut(s)	1617, 2130
Fnu4HI	GCNGC	9 cut(s)	241, 244, 311, 648, 682, 1022, 1224, 1893, 2402
FokI	GGATG	8 cut(s)	809, 833, 955, 1461, 1925, 1988, 1999, 2347
FriOI	GRGCYC	1 cut(s)	1269
Fsp4HI	GCNGC	9 cut(s)	241, 244, 311, 648, 682, 1022, 1224, 1893, 2402
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	6 cut(s)	154, 163, 309, 1238, 1891, 2167
GluI	GCNGC	9 cut(s)	241, 244, 311, 648, 682, 1022, 1224, 1893, 2402
HaeII	RGCGCY	3 cut(s)	156, 165, 1240
HapII	CCGG	8 cut(s)	66, 92, 354, 438, 931, 989, 1059, 1673
HgaI	GACGC	1 cut(s)	733
HhaI	GCGC	6 cut(s)	155, 164, 310, 1239, 1892, 2168
Hin1I	GRCGYC	1 cut(s)	2127
Hin6I	GCGC	6 cut(s)	153, 162, 308, 1237, 1890, 2166
HinP1I	GCGC	6 cut(s)	153, 162, 308, 1237, 1890, 2166
HincII	GTYRAC	3 cut(s)	262, 532, 1365
HindII	GTYRAC	3 cut(s)	262, 532, 1365
HpaII	CCGG	8 cut(s)	66, 92, 354, 438, 931, 989, 1059, 1673
Hpy188III	TCNNGA	6 cut(s)	455, 1258, 1322, 1467, 1660, 2081
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	7 cut(s)	461, 490, 1100, 1192, 1492, 1922, 2414
HpyCH4III	ACNGT	5 cut(s)	133, 372, 1099, 1375, 1946
HpyCH4IV	ACGT	6 cut(s)	528, 672, 812, 1810, 1950, 2127
HpySE526I	ACGT	6 cut(s)	528, 672, 812, 1810, 1950, 2127
Hsp92I	GRCGYC	1 cut(s)	2127
HspAI	GCGC	6 cut(s)	153, 162, 308, 1237, 1890, 2166
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	2254
Kzo9I	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
LguI	GCTCTTC	1 cut(s)	1949
LmnI	GCTCC	3 cut(s)	416, 1109, 2348
Lsp1109I	GCAGC	7 cut(s)	255, 659, 693, 1008, 1235, 1904, 2413
LweI	GCATC	6 cut(s)	86, 574, 612, 708, 787, 1297
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	6 cut(s)	528, 672, 812, 1810, 1950, 2127
MaeIII	GTNAC	7 cut(s)	49, 133, 440, 1733, 1946, 2282, 2515
MalI	GATC	7 cut(s)	272, 1424, 1471, 1553, 1787, 2256, 2268
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
MflI	RGATCY	1 cut(s)	1469
MhlI	GDGCHC	4 cut(s)	1269, 1693, 1934, 1961
MlsI	TGGCCA	1 cut(s)	1991
MluI	ACGCGT	1 cut(s)	591
MluNI	TGGCCA	1 cut(s)	1991
MlyI	GAGTC	6 cut(s)	553, 755, 1283, 1370, 1457, 2107
MmeI	TCCRAC	2 cut(s)	655, 1579
Mox20I	TGGCCA	1 cut(s)	1991
Mph1103I	ATGCAT	2 cut(s)	2340, 2510
MroNI	GCCGGC	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	1991
MseI	TTAA	7 cut(s)	600, 827, 885, 1278, 1701, 2502, 2535
MslI	CAYNNNNRTG	9 cut(s)	92, 620, 1029, 1409, 1920, 2057, 2241, 2343, 2513
Msp20I	TGGCCA	1 cut(s)	1991
MspI	CCGG	8 cut(s)	66, 92, 354, 438, 931, 989, 1059, 1673
MspR9I	CCNGG	4 cut(s)	938, 979, 1060, 2213
MvaI	CCWGG	3 cut(s)	938, 979, 2213
MvnI	CGCG	3 cut(s)	310, 593, 2168
NaeI	GCCGGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	1060
NcoI	CCATGG	1 cut(s)	1926
NdeI	CATATG	2 cut(s)	145, 1303
NdeII	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
NgoMIV	GCCGGC	1 cut(s)	353
NlaIV	GGNNCC	6 cut(s)	935, 1690, 1826, 1924, 1933, 2085
NmeAIII	GCCGAG	1 cut(s)	2320
NmuCI	GTSAC	6 cut(s)	49, 133, 440, 1733, 1946, 2515
NsiI	ATGCAT	2 cut(s)	2340, 2510
NspI	RCATGY	4 cut(s)	784, 1177, 2035, 2338
NspV	TTCGAA	1 cut(s)	221
OliI	CACNNNNGTG	2 cut(s)	92, 2057
PaeI	GCATGC	1 cut(s)	2338
PasI	CCCWGGG	1 cut(s)	937
PceI	AGGCCT	1 cut(s)	2173
PciI	ACATGT	3 cut(s)	780, 1173, 2031
PciSI	GCTCTTC	1 cut(s)	1949
PcsI	WCGNNNNNNNCGW	1 cut(s)	2021
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	9 cut(s)	339, 389, 848, 995, 1325, 1428, 1676, 2026, 2495
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	9 cut(s)	242, 245, 312, 649, 683, 1023, 1225, 1894, 2403
PleI	GAGTC	6 cut(s)	552, 755, 1283, 1369, 1457, 2107
PmaCI	CACGTG	1 cut(s)	1811
PmlI	CACGTG	1 cut(s)	1811
PpsI	GAGTC	6 cut(s)	552, 755, 1283, 1369, 1457, 2107
Ppu21I	YACGTR	1 cut(s)	1811
PscI	ACATGT	3 cut(s)	780, 1173, 2031
PsiI	TTATAA	1 cut(s)	189
Psp1406I	AACGTT	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	936, 977, 2211
PspCI	CACGTG	1 cut(s)	1811
PspGI	CCWGG	3 cut(s)	936, 977, 2211
PspN4I	GGNNCC	6 cut(s)	935, 1690, 1826, 1924, 1933, 2085
PspPI	GGNCC	6 cut(s)	140, 933, 1181, 1825, 2083, 2223
PstI	CTGCAG	2 cut(s)	649, 723
PsuI	RGATCY	1 cut(s)	1469
RsaI	GTAC	9 cut(s)	86, 294, 377, 671, 785, 815, 899, 1172, 1910
RsaNI	GTAC	9 cut(s)	85, 293, 376, 670, 784, 814, 898, 1171, 1909
RseI	CAYNNNNRTG	9 cut(s)	92, 620, 1029, 1409, 1920, 2057, 2241, 2343, 2513
SapI	GCTCTTC	1 cut(s)	1949
SaqAI	TTAA	7 cut(s)	600, 827, 885, 1278, 1701, 2502, 2535
SatI	GCNGC	9 cut(s)	241, 244, 311, 648, 682, 1022, 1224, 1893, 2402
Sau3AI	GATC	7 cut(s)	270, 1422, 1469, 1551, 1785, 2254, 2266
Sau96I	GGNCC	6 cut(s)	140, 933, 1181, 1825, 2083, 2223
SchI	GAGTC	6 cut(s)	553, 755, 1283, 1370, 1457, 2107
ScrFI	CCNGG	4 cut(s)	938, 979, 1060, 2213
SduI	GDGCHC	4 cut(s)	1269, 1693, 1934, 1961
SfaNI	GCATC	6 cut(s)	86, 574, 612, 708, 787, 1297
SfcI	CTRYAG	3 cut(s)	645, 719, 1874
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	3 cut(s)	933, 1825, 2083
SmiMI	CAYNNNNRTG	9 cut(s)	92, 620, 1029, 1409, 1920, 2057, 2241, 2343, 2513
SmlI	CTYRAG	3 cut(s)	689, 1465, 2387
SmoI	CTYRAG	3 cut(s)	689, 1465, 2387
SphI	GCATGC	1 cut(s)	2338
SseBI	AGGCCT	1 cut(s)	2173
SsiI	CCGC	7 cut(s)	241, 310, 351, 409, 787, 1331, 1738
SspI	AATATT	1 cut(s)	2093
SspMI	CTAG	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	2173
StyD4I	CCNGG	4 cut(s)	936, 977, 1058, 2211
StyI	CCWWGG	3 cut(s)	1859, 1926, 1992
TaaI	ACNGT	5 cut(s)	133, 372, 1099, 1375, 1946
TaiI	ACGT	6 cut(s)	531, 675, 815, 1813, 1953, 2130
TatI	WGTACW	2 cut(s)	375, 1170
TauI	GCSGC	2 cut(s)	243, 313
TfiI	GAWTC	9 cut(s)	339, 389, 848, 995, 1325, 1428, 1676, 2026, 2495
Tru1I	TTAA	7 cut(s)	600, 827, 885, 1278, 1701, 2502, 2535
Tru9I	TTAA	7 cut(s)	600, 827, 885, 1278, 1701, 2502, 2535
TscAI	CASTG	8 cut(s)	142, 472, 484, 718, 797, 1548, 1570, 1846
TseFI	GTSAC	6 cut(s)	49, 133, 440, 1733, 1946, 2515
TseI	GCWGC	7 cut(s)	243, 647, 681, 1021, 1223, 1892, 2401
Tsp45I	GTSAC	6 cut(s)	49, 133, 440, 1733, 1946, 2515
TspGWI	ACGGA	2 cut(s)	1642, 2204
TspRI	CASTG	8 cut(s)	142, 472, 484, 718, 797, 1548, 1570, 1846
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	933, 1825, 2083
XapI	RAATTY	4 cut(s)	326, 515, 878, 888
XceI	RCATGY	4 cut(s)	784, 1177, 2035, 2338
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1130, 1857
XmiI	GTMKAC	2 cut(s)	1617, 2130
XspI	CTAG	1 cut(s)	81
ZraI	GACGTC	1 cut(s)	2128
Zsp2I	ATGCAT	2 cut(s)	2340, 2510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.