Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

8058128 .. 8060782

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGAAACCAATCATCACTCCTCTCTACCTCTCCTTGTTCTTCCACTTCCTCACTCTCTTCGCCACCGGTCAGTCGCCACCATACACTCCGGTCGACAATATCACCCTCGCCTGCGGCAATTCCGGCCAACCGACCTCTAATGACCTCAGAAAGTGGAGTGGAGATATCAACTCAAAATTCACCCCAATAGGTAACGCATCCCAATCCATAGATGCACCGCGGTCGGACACAGCCAGCCAAGTCCCTTACACCAAAGCTCGGCTCTCTCGCTCCGAATTCACTTACAAAATTCCCCTCTCTCCCGGCCAAAAATTCATCCGCTTGCATTTCAACCCAGATACATACACCCCGGACTTCCAACGCTCCAATTCTCTCTTCTCCGTCACCGCCGCCGGCTTCACTCTCCTCAAAGACTTCAACGCCTCCGTCACCGCGGACGCCTCCGGCGGTTCCCCTCTGGTCAGAGAATTCTGTGTAAACATCGAGACAGGACGGAGACTCGAGATCACCTTCACACCAAGCAAAAATGCGTACGCTTTCATCAACGGAATCGAAATCGTGTCCATGCCCACCAGTTTTTACTACACCGCAGCCGAAAGCCATGGGATTCGCAATCCAGGCAACCAACAAAACTATTACATTGAAAACAACACAGCTCTGGAGATGGTGTACCGAATCAACGTCGGGGGAGGCCCCATCTCGCCGGACGCAGACACCGGAATGTACCGGAATTGGGACAACGCCGACGAAACTTATTTGGATGATATAAGTACAAAAGAAAGCGTGCTACCACAGAACAATACAATCGACCTCAATTTCGTCAAAGTTCCAGAATACTCTGCCCCAAAAGCAGTTTACACAACAGGTCGGTCAATGGGGATGAACAAAACCATCAACAAGAGCTATAACCTCACATGGGTATTTCCCTTAGATCCCAAGTTTTATTACCTGGTGAGACTCCATTTCTGTGAGTTTGAATCTGATATTACCAAGTACGGAGAGCGATCGTTTCAAATCTTCATGGCCAATCAAACCGCAGAAGAACTTGCAGATGTCATCGGATGGAGTGGAGCAAATGGGAATCCAGTTTACAGAGACTACGTTGTGGGAATGTTCATGTCTCCGGTAGGAAGCCAGAAGAAAGTTAACCTCTTTCTAGTACTCGCAGCGCTACAGAAAGATTCGTATACTACTTACAACGATGCCATCTTGAACGGGCTAGAAATCTTCAAGCTCAGCAACTCGAGTGGGAGTCTTGCCGGACCCAACCCCGACCCACCTCCGGTGAACGCACCAAAGATACTCCCGAAGAGCCCCAGTAAGAAGAAGTCTACTCCTATGGCAGCTATTATTGCAGGCGTAGTTTCCGGGTTACTTATGCTCTCTGTGCTCGGATTTTTTGTTTTCCGGCGAGTGAGAAAGGCCAAGGACTATAGCTCAAGTCAAGTCAAGTGGGGTCTGCTTTCTTTTTCAACGACTACTAAGTCCTCCAAGTCCACCACGTCTTACGGTTCATCTCTGCCGTCCGAGCTGTGTCATCACTTTTCATTGGCGGAGATCAGAGCAGCCACGCAAAACTTTGACGATTCGAACGTTATTGGGCGTGGCGGGTTTGGTAACGTGTACAAAGGTACCATCAACGGTGCGTCCACACCCTTTGCGATCAAACGGCTGAAAGCGGAGTCATCACAGGGTGCCCTTGAGTTCAAGACGGAGATCGAATTGCTCTCCCAACTCCGTCACGTCCATCTCGTGTCTCTGGTCGGGTACTGTGACGACAACGGTGAAATGATTTTGGTGTATGACTATATGGAAAATGGGACCCTACGCGATCATTTGTACAACTCCGAAAATCCACCACTTCCTTGGGAACAAAGGCTTCAAGTTTGTATTGGTGCGGCGCGTGGGTTGCACTACCTTCACACTGGTGTCAAGTGTATGATCATTCACCGAGACGTGAAGAGCACGAACATCTTGTTGGACGATAAATGGGTGGCCAAGGTCGCTGATTTCGGGTTGTCGAAAATGGGAACGACCACCATGTCCAAGACCCACATTAGCACCATGGTCAAGGGTAGTTTCGGCTATCTCGATCCGGAGTACTACCGTCGTCAACAGTTGACGGAGAAGTCTGATGTGTACTCATTCGGAGTAGTATTGTGTGAGGCGTTGTGTGCTAGGCCGGCTTTGATCCGTACAGCGGACAAGAAGCAAATGAACCTAGCTGCATGGTTTAAGACCTGTCATGGAAACGGAACGCTTGACCAAATCATTGACTCGAATTTGAGGGGTAAGATTGTAAATGAGTGCTTGGACAAGTTTATTGAAATTGCAATTAGTTGTATGCATGATAATGGGAGTGAAAGACCGTCCATGAATGATGTTATATGGGCACTTGAGTGTGCATTAAAACTTCAACAGACCGCAGAGGGTTCGGATTTGGATTTCAATCCTGGAAAGAAGGTTGAAGATGAGGCTTCAATGCTGAATGATAGTGATGCAGGGTTTAGTGGCACTTGGGGAGACTCGTCAGGTTCCAAGAACAGCAGGGTGACCAAAACTAGTAGTAGTTACCAAAATTCTAGTGCTAGTGATTCCATTAAAGGGTTGTCAGGTACAGTCTTCTCTGAGATCTACGATCCCAATGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

884

Amino Acids

97.61

Weight (kDa)

6.94

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	37 - 411	4e-30	Malectin-like domain
Pkinase	PF00069	529 - 795	6e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	531 - 796	4.3e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1483, 2041, 2128
Acc65I	GGTACC	1 cut(s)	1631
AccB1I	GGYRCC	2 cut(s)	1631, 1694
AccI	GTMKAC	3 cut(s)	93, 1187, 1331
AccII	CGCG	4 cut(s)	220, 434, 1830, 1903
AccIII	TCCGGA	1 cut(s)	2095
AclI	AACGTT	1 cut(s)	1593
AclWI	GGATC	4 cut(s)	926, 2087, 2185, 2633
AcoI	YGGCCR	4 cut(s)	124, 304, 1023, 1995
AcsI	RAATTY	7 cut(s)	176, 275, 288, 311, 467, 2281, 2578
AcyI	GRCGYC	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	1694
AfeI	AGCGCT	1 cut(s)	1170
AfiI	CCNNNNNNNGG	6 cut(s)	258, 733, 916, 1282, 2200, 2604
AflIII	ACRYGT	1 cut(s)	1620
AgeI	ACCGGT	1 cut(s)	65
AhlI	ACTAGT	1 cut(s)	2561
AjiI	CACGTC	3 cut(s)	1503, 1744, 1957
AjnI	CCWGG	3 cut(s)	616, 948, 2452
AjuI	GAANNNNNNNTTGG	4 cut(s)	359, 391, 1961, 1993
AleI	CACNNNNGTG	2 cut(s)	1926, 2398
AluBI	AGCT	8 cut(s)	257, 656, 903, 1234, 1346, 1437, 1531, 2225
AluI	AGCT	8 cut(s)	257, 656, 903, 1234, 1346, 1437, 1531, 2225
Alw21I	GWGCWC	2 cut(s)	1392, 1967
Alw26I	GTCTC	8 cut(s)	479, 490, 949, 1089, 1125, 1761, 1947, 2517
AlwI	GGATC	4 cut(s)	926, 2087, 2185, 2633
Ama87I	CYCGRG	2 cut(s)	500, 1243
Aor13HI	TCCGGA	1 cut(s)	2095
Aor51HI	AGCGCT	1 cut(s)	1170
AoxI	GGCC	7 cut(s)	124, 304, 691, 1023, 1422, 1995, 2180
ApeKI	GCWGC	5 cut(s)	590, 1166, 1343, 1565, 2225
ApoI	RAATTY	7 cut(s)	176, 275, 288, 311, 467, 2281, 2578
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AsiGI	ACCGGT	1 cut(s)	65
Asp718I	GGTACC	1 cut(s)	1631
AspLEI	GCGC	2 cut(s)	1171, 1903
AspS9I	GGNCC	3 cut(s)	692, 1262, 1821
AsuC2I	CCSGG	3 cut(s)	303, 350, 1369
AsuII	TTCGAA	1 cut(s)	1589
AvaI	CYCGRG	2 cut(s)	500, 1243
AvaII	GGWCC	2 cut(s)	1262, 1821
BaeGI	GKGCMC	2 cut(s)	1699, 2395
BaeI	ACNNNNGTAYC	2 cut(s)	1615, 1648
BalI	TGGCCA	2 cut(s)	1025, 1997
BanI	GGYRCC	2 cut(s)	1631, 1694
BanII	GRGCYC	1 cut(s)	1316
BauI	CACGAG	1 cut(s)	1751
BbsI	GAAGAC	1 cut(s)	2614
Bbv12I	GWGCWC	2 cut(s)	1392, 1967
BbvI	GCAGC	5 cut(s)	602, 1178, 1355, 1577, 2212
BccI	CCATC	7 cut(s)	658, 704, 899, 1056, 1214, 1643, 1755
BceAI	ACGGC	2 cut(s)	1507, 1685
BcgI	CGANNNNNNTGC	4 cut(s)	204, 238, 2415, 2449
BciT130I	CCWGG	3 cut(s)	618, 950, 2454
BclI	TGATCA	1 cut(s)	1941
BcnI	CCSGG	3 cut(s)	303, 350, 1369
BcoDI	GTCTC	8 cut(s)	479, 490, 949, 1089, 1125, 1761, 1947, 2517
BcuI	ACTAGT	1 cut(s)	2561
BfaI	CTAG	7 cut(s)	1157, 1220, 2178, 2222, 2562, 2583, 2589
BfmI	CTRYAG	2 cut(s)	1172, 1432
BfoI	RGCGCY	1 cut(s)	1172
BglII	AGATCT	1 cut(s)	2631
BisI	GCNGC	8 cut(s)	115, 390, 591, 1167, 1344, 1566, 1899, 2226
BlpI	GCTNAGC	1 cut(s)	1235
BlsI	GCNGC	8 cut(s)	116, 391, 592, 1168, 1345, 1567, 1900, 2227
BmcAI	AGTACT	2 cut(s)	1161, 2102
Bme1390I	CCNGG	6 cut(s)	303, 350, 618, 950, 1369, 2454
Bme18I	GGWCC	2 cut(s)	1262, 1821
BmeT110I	CYCGRG	2 cut(s)	500, 1243
BmgBI	CACGTC	3 cut(s)	1503, 1744, 1957
BmgT120I	GGNCC	3 cut(s)	692, 1262, 1821
BmiI	GGNNCC	8 cut(s)	451, 694, 1264, 1633, 1696, 1822, 1823, 2536
BmrFI	CCNGG	6 cut(s)	303, 350, 618, 950, 1369, 2454
BmrI	ACTGGG	1 cut(s)	1311
BmsI	GCATC	4 cut(s)	202, 206, 1192, 2488
BmuI	ACTGGG	1 cut(s)	1311
BpiI	GAAGAC	1 cut(s)	2614
BpmI	CTGGAG	1 cut(s)	680
Bpu1102I	GCTNAGC	1 cut(s)	1235
Bpu14I	TTCGAA	1 cut(s)	1589
BpuEI	CTTGAG	3 cut(s)	1423, 1721, 2417
BpuMI	CCSGG	3 cut(s)	303, 350, 1369
BsaBI	GATNNNNATC	1 cut(s)	2448
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	8 cut(s)	218, 348, 432, 601, 1425, 1865, 1998, 2064
BsaWI	WCCGGW	7 cut(s)	65, 88, 716, 726, 1123, 1282, 2095
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	6 cut(s)	258, 733, 916, 1282, 2200, 2604
Bse118I	RCCGGY	3 cut(s)	65, 392, 2182
Bse1I	ACTGG	4 cut(s)	573, 1085, 1317, 1930
Bse8I	GATNNNNATC	1 cut(s)	2448
BseAI	TCCGGA	1 cut(s)	2095
BseBI	CCWGG	3 cut(s)	618, 950, 2454
BseDI	CCNNGG	8 cut(s)	218, 348, 432, 601, 1425, 1865, 1998, 2064
BseGI	GGATG	5 cut(s)	197, 315, 766, 885, 1067
BseJI	GATNNNNATC	1 cut(s)	2448
BseLI	CCNNNNNNNGG	6 cut(s)	258, 733, 916, 1282, 2200, 2604
BseMII	CTCAG	3 cut(s)	160, 1249, 2619
BseNI	ACTGG	4 cut(s)	573, 1085, 1317, 1930
BseRI	GAGGAG	2 cut(s)	9, 395
BseSI	GKGCMC	2 cut(s)	1699, 2395
BseXI	GCAGC	5 cut(s)	602, 1178, 1355, 1577, 2212
Bsh1236I	CGCG	4 cut(s)	220, 434, 1830, 1903
Bsh1285I	CGRYCG	3 cut(s)	93, 224, 1007
BshFI	GGCC	7 cut(s)	126, 306, 693, 1025, 1424, 1997, 2182
BshNI	GGYRCC	2 cut(s)	1631, 1694
BshTI	ACCGGT	1 cut(s)	65
BsiEI	CGRYCG	3 cut(s)	93, 224, 1007
BsiHKAI	GWGCWC	2 cut(s)	1392, 1967
BsiHKCI	CYCGRG	2 cut(s)	500, 1243
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	3 cut(s)	227, 749, 1834
BslI	CCNNNNNNNGG	6 cut(s)	258, 733, 916, 1282, 2200, 2604
BsmAI	GTCTC	8 cut(s)	479, 490, 949, 1089, 1125, 1761, 1947, 2517
BsmBI	CGTCTC	1 cut(s)	1947
BsmFI	GGGAC	3 cut(s)	227, 749, 1834
BsnI	GGCC	7 cut(s)	126, 306, 693, 1025, 1424, 1997, 2182
BsoBI	CYCGRG	2 cut(s)	500, 1243
Bsp119I	TTCGAA	1 cut(s)	1589
Bsp1286I	GDGCHC	5 cut(s)	1316, 1392, 1699, 1967, 2395
Bsp13I	TCCGGA	1 cut(s)	2095
Bsp1407I	TGTACA	2 cut(s)	1623, 1839
Bsp1720I	GCTNAGC	1 cut(s)	1235
Bsp19I	CCATGG	2 cut(s)	601, 2064
BspANI	GGCC	7 cut(s)	126, 306, 693, 1025, 1424, 1997, 2182
BspCNI	CTCAG	3 cut(s)	159, 1248, 2620
BspEI	TCCGGA	1 cut(s)	2095
BspFNI	CGCG	4 cut(s)	220, 434, 1830, 1903
BspLI	GGNNCC	8 cut(s)	451, 694, 1264, 1633, 1696, 1822, 1823, 2536
BspPI	GGATC	4 cut(s)	926, 2087, 2185, 2633
BspQI	GCTCTTC	2 cut(s)	1304, 1955
BspT104I	TTCGAA	1 cut(s)	1589
BspT107I	GGYRCC	2 cut(s)	1631, 1694
BsrFI	RCCGGY	3 cut(s)	65, 392, 2182
BsrGI	TGTACA	2 cut(s)	1623, 1839
BsrI	ACTGG	4 cut(s)	573, 1085, 1317, 1930
BssAI	RCCGGY	3 cut(s)	65, 392, 2182
BssECI	CCNNGG	8 cut(s)	218, 348, 432, 601, 1425, 1865, 1998, 2064
BssNAI	GTATAC	1 cut(s)	1188
BssNI	GRCGYC	1 cut(s)	438
BssSI	CACGAG	1 cut(s)	1751
BssT1I	CCWWGG	5 cut(s)	601, 1425, 1865, 1998, 2064
Bst1107I	GTATAC	1 cut(s)	1188
Bst2BI	CACGAG	1 cut(s)	1751
Bst2UI	CCWGG	3 cut(s)	618, 950, 2454
Bst4CI	ACNGT	8 cut(s)	1511, 1643, 1772, 1784, 2108, 2118, 2370, 2620
Bst6I	CTCTTC	4 cut(s)	62, 380, 1304, 1955
BstACI	GRCGYC	1 cut(s)	438
BstAUI	TGTACA	2 cut(s)	1623, 1839
BstBI	TTCGAA	1 cut(s)	1589
BstC8I	GCNNGC	7 cut(s)	112, 235, 323, 394, 785, 1357, 2184
BstDEI	CTNAG	5 cut(s)	146, 928, 1235, 1482, 2628
BstDSI	CCRYGG	4 cut(s)	218, 432, 601, 2064
BstEII	GGTNACC	1 cut(s)	2551
BstF5I	GGATG	5 cut(s)	197, 315, 766, 885, 1067
BstFNI	CGCG	4 cut(s)	220, 434, 1830, 1903
BstH2I	RGCGCY	1 cut(s)	1172
BstHHI	GCGC	2 cut(s)	1171, 1903
BstMAI	GTCTC	8 cut(s)	479, 490, 949, 1089, 1125, 1761, 1947, 2517
BstMCI	CGRYCG	3 cut(s)	93, 224, 1007
BstNI	CCWGG	3 cut(s)	618, 950, 2454
BstPI	GGTNACC	1 cut(s)	2551
BstSCI	CCNGG	6 cut(s)	301, 348, 616, 948, 1367, 2452
BstSFI	CTRYAG	2 cut(s)	1172, 1432
BstSLI	GKGCMC	2 cut(s)	1699, 2395
BstUI	CGCG	4 cut(s)	220, 434, 1830, 1903
BstV1I	GCAGC	5 cut(s)	602, 1178, 1355, 1577, 2212
BstV2I	GAAGAC	1 cut(s)	2614
BstX2I	RGATCY	2 cut(s)	931, 2631
BstXI	CCANNNNNNTGG	1 cut(s)	1866
BstYI	RGATCY	2 cut(s)	931, 2631
BstZ17I	GTATAC	1 cut(s)	1188
BsuRI	GGCC	7 cut(s)	126, 306, 693, 1025, 1424, 1997, 2182
BtgI	CCRYGG	4 cut(s)	218, 432, 601, 2064
BtrI	CACGTC	3 cut(s)	1503, 1744, 1957
BtsCI	GGATG	5 cut(s)	197, 315, 766, 885, 1067
BtsIMutI	CAGTG	1 cut(s)	1923
Cac8I	GCNNGC	7 cut(s)	112, 235, 323, 394, 785, 1357, 2184
CfoI	GCGC	2 cut(s)	1171, 1903
Cfr10I	RCCGGY	3 cut(s)	65, 392, 2182
Cfr13I	GGNCC	3 cut(s)	692, 1262, 1821
Cfr42I	CCGCGG	2 cut(s)	221, 435
CseI	GACGC	3 cut(s)	446, 716, 1635
CsiI	ACCWGGT	1 cut(s)	948
CspAI	ACCGGT	1 cut(s)	65
CspCI	CAANNNNNGTGG	6 cut(s)	1228, 1263, 1433, 1468, 1639, 1674
DdeI	CTNAG	5 cut(s)	146, 928, 1235, 1482, 2628
DraIII	CACNNNGTG	1 cut(s)	1694
DrdI	GACNNNNNNGTC	3 cut(s)	1483, 2041, 2128
DseDI	GACNNNNNNGTC	3 cut(s)	1483, 2041, 2128
EaeI	YGGCCR	4 cut(s)	124, 304, 1023, 1995
Eam1104I	CTCTTC	4 cut(s)	62, 380, 1304, 1955
EarI	CTCTTC	4 cut(s)	62, 380, 1304, 1955
EciI	GGCGGA	1 cut(s)	1568
Eco130I	CCWWGG	5 cut(s)	601, 1425, 1865, 1998, 2064
Eco24I	GRGCYC	1 cut(s)	1316
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	1262, 1821
Eco47III	AGCGCT	1 cut(s)	1170
Eco88I	CYCGRG	2 cut(s)	500, 1243
Eco91I	GGTNACC	1 cut(s)	2551
EcoO109I	RGGNCCY	2 cut(s)	692, 1821
EcoO65I	GGTNACC	1 cut(s)	2551
EcoRI	GAATTC	2 cut(s)	275, 467
EcoRII	CCWGG	3 cut(s)	616, 948, 2452
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	5 cut(s)	601, 1425, 1865, 1998, 2064
EcoT22I	ATGCAT	1 cut(s)	2349
EcoT38I	GRGCYC	1 cut(s)	1316
ErhI	CCWWGG	5 cut(s)	601, 1425, 1865, 1998, 2064
Esp3I	CGTCTC	1 cut(s)	1947
FaqI	GGGAC	3 cut(s)	227, 749, 1834
FauI	CCCGC	1 cut(s)	1601
FbaI	TGATCA	1 cut(s)	1941
FblI	GTMKAC	3 cut(s)	93, 1187, 1331
Fnu4HI	GCNGC	8 cut(s)	115, 390, 591, 1167, 1344, 1566, 1899, 2226
FokI	GGATG	5 cut(s)	184, 302, 773, 892, 1074
FriOI	GRGCYC	1 cut(s)	1316
Fsp4HI	GCNGC	8 cut(s)	115, 390, 591, 1167, 1344, 1566, 1899, 2226
FspBI	CTAG	7 cut(s)	1157, 1220, 2178, 2222, 2562, 2583, 2589
GlaI	GCGC	2 cut(s)	1170, 1902
GluI	GCNGC	8 cut(s)	115, 390, 591, 1167, 1344, 1566, 1899, 2226
GsuI	CTGGAG	1 cut(s)	680
HaeII	RGCGCY	1 cut(s)	1172
HaeIII	GGCC	7 cut(s)	126, 306, 693, 1025, 1424, 1997, 2182
HgaI	GACGC	3 cut(s)	446, 716, 1635
HhaI	GCGC	2 cut(s)	1171, 1903
Hin1I	GRCGYC	1 cut(s)	438
Hin6I	GCGC	2 cut(s)	1169, 1901
HinP1I	GCGC	2 cut(s)	1169, 1901
HincII	GTYRAC	4 cut(s)	94, 1147, 2114, 2121
HindII	GTYRAC	4 cut(s)	94, 1147, 2114, 2121
HpaI	GTTAAC	1 cut(s)	1147
Hpy188III	TCNNGA	9 cut(s)	484, 502, 659, 830, 1210, 1306, 1708, 2090, 2096
Hpy99I	CGWCG	3 cut(s)	686, 749, 2112
HpyAV	CCTTC	3 cut(s)	520, 1928, 2455
HpyCH4III	ACNGT	8 cut(s)	1511, 1643, 1772, 1784, 2108, 2118, 2370, 2620
HpyCH4IV	ACGT	7 cut(s)	681, 1101, 1502, 1593, 1620, 1743, 1956
HpyF3I	CTNAG	5 cut(s)	146, 928, 1235, 1482, 2628
HpySE526I	ACGT	7 cut(s)	681, 1101, 1502, 1593, 1620, 1743, 1956
Hsp92I	GRCGYC	1 cut(s)	438
HspAI	GCGC	2 cut(s)	1169, 1901
KflI	GGGWCCC	1 cut(s)	1821
Kpn2I	TCCGGA	1 cut(s)	2095
KpnI	GGTACC	1 cut(s)	1635
KroI	GCCGGC	2 cut(s)	392, 2182
KroNI	GCCGGC	2 cut(s)	394, 2184
Ksp22I	TGATCA	1 cut(s)	1941
KspAI	GTTAAC	1 cut(s)	1147
KspI	CCGCGG	2 cut(s)	221, 435
LguI	GCTCTTC	2 cut(s)	1304, 1955
LmnI	GCTCC	3 cut(s)	275, 368, 1070
Lsp1109I	GCAGC	5 cut(s)	602, 1178, 1355, 1577, 2212
LweI	GCATC	4 cut(s)	202, 206, 1192, 2488
MabI	ACCWGGT	1 cut(s)	948
MaeI	CTAG	7 cut(s)	1157, 1220, 2178, 2222, 2562, 2583, 2589
MaeII	ACGT	7 cut(s)	681, 1101, 1502, 1593, 1620, 1743, 1956
MaeIII	GTNAC	9 cut(s)	191, 382, 427, 1371, 1616, 1739, 1772, 2551, 2570
MflI	RGATCY	2 cut(s)	931, 2631
MhlI	GDGCHC	5 cut(s)	1316, 1392, 1699, 1967, 2395
MlsI	TGGCCA	2 cut(s)	1025, 1997
MluNI	TGGCCA	2 cut(s)	1025, 1997
MlyI	GAGTC	6 cut(s)	492, 951, 1261, 1691, 2270, 2519
MmeI	TCCRAC	3 cut(s)	204, 382, 1959
Mox20I	TGGCCA	2 cut(s)	1025, 1997
Mph1103I	ATGCAT	1 cut(s)	2349
MroI	TCCGGA	1 cut(s)	2095
MroNI	GCCGGC	2 cut(s)	392, 2182
MscI	TGGCCA	2 cut(s)	1025, 1997
MseI	TTAA	4 cut(s)	1146, 2235, 2408, 2601
MslI	CAYNNNNRTG	5 cut(s)	719, 966, 1926, 2352, 2398
Msp20I	TGGCCA	2 cut(s)	1025, 1997
MspA1I	CMGCKG	3 cut(s)	220, 434, 2201
MspR9I	CCNGG	6 cut(s)	303, 350, 618, 950, 1369, 2454
MvaI	CCWGG	3 cut(s)	618, 950, 2454
MvnI	CGCG	4 cut(s)	220, 434, 1830, 1903
NaeI	GCCGGC	2 cut(s)	394, 2184
NciI	CCSGG	3 cut(s)	303, 350, 1369
NcoI	CCATGG	2 cut(s)	601, 2064
NgoMIV	GCCGGC	2 cut(s)	392, 2182
NlaIV	GGNNCC	8 cut(s)	451, 694, 1264, 1633, 1696, 1822, 1823, 2536
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	5 cut(s)	382, 427, 1739, 1772, 2551
NsiI	ATGCAT	1 cut(s)	2349
NspV	TTCGAA	1 cut(s)	1589
OliI	CACNNNNGTG	2 cut(s)	1926, 2398
PaeR7I	CTCGAG	2 cut(s)	500, 1243
PciSI	GCTCTTC	2 cut(s)	1304, 1955
PcsI	WCGNNNNNNNCGW	3 cut(s)	1590, 1749, 2088
PdiI	GCCGGC	2 cut(s)	394, 2184
PfeI	GAWTC	8 cut(s)	549, 607, 675, 977, 1081, 1181, 1586, 2594
Pfl23II	CGTACG	1 cut(s)	531
PfoI	TCCNGGA	1 cut(s)	2452
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	8 cut(s)	116, 391, 592, 1168, 1345, 1567, 1900, 2227
Ple19I	CGATCG	1 cut(s)	1007
PleI	GAGTC	6 cut(s)	492, 951, 1260, 1690, 2270, 2519
PpsI	GAGTC	6 cut(s)	492, 951, 1260, 1690, 2270, 2519
PpuMI	RGGWCCY	1 cut(s)	1821
Psp1406I	AACGTT	1 cut(s)	1593
Psp5II	RGGWCCY	1 cut(s)	1821
Psp6I	CCWGG	3 cut(s)	616, 948, 2452
PspEI	GGTNACC	1 cut(s)	2551
PspGI	CCWGG	3 cut(s)	616, 948, 2452
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	8 cut(s)	451, 694, 1264, 1633, 1696, 1822, 1823, 2536
PspPI	GGNCC	3 cut(s)	692, 1262, 1821
PspPPI	RGGWCCY	1 cut(s)	1821
PspXI	VCTCGAGB	1 cut(s)	1243
PsuI	RGATCY	2 cut(s)	931, 2631
PvuI	CGATCG	1 cut(s)	1007
RseI	CAYNNNNRTG	5 cut(s)	719, 966, 1926, 2352, 2398
SacII	CCGCGG	2 cut(s)	221, 435
SalI	GTCGAC	1 cut(s)	92
SapI	GCTCTTC	2 cut(s)	1304, 1955
SaqAI	TTAA	4 cut(s)	1146, 2235, 2408, 2601
SatI	GCNGC	8 cut(s)	115, 390, 591, 1167, 1344, 1566, 1899, 2226
Sau96I	GGNCC	3 cut(s)	692, 1262, 1821
ScaI	AGTACT	2 cut(s)	1161, 2102
SchI	GAGTC	6 cut(s)	492, 951, 1261, 1691, 2270, 2519
ScrFI	CCNGG	6 cut(s)	303, 350, 618, 950, 1369, 2454
SduI	GDGCHC	5 cut(s)	1316, 1392, 1699, 1967, 2395
SexAI	ACCWGGT	1 cut(s)	948
SfaNI	GCATC	4 cut(s)	202, 206, 1192, 2488
SfcI	CTRYAG	2 cut(s)	1172, 1432
Sfr274I	CTCGAG	2 cut(s)	500, 1243
Sfr303I	CCGCGG	2 cut(s)	221, 435
SfuI	TTCGAA	1 cut(s)	1589
SgrBI	CCGCGG	2 cut(s)	221, 435
SinI	GGWCC	2 cut(s)	1262, 1821
SlaI	CTCGAG	2 cut(s)	500, 1243
SmiMI	CAYNNNNRTG	5 cut(s)	719, 966, 1926, 2352, 2398
SmlI	CTYRAG	5 cut(s)	500, 1243, 1438, 1700, 2396
SmoI	CTYRAG	5 cut(s)	500, 1243, 1438, 1700, 2396
SpeI	ACTAGT	1 cut(s)	2561
SspMI	CTAG	7 cut(s)	1157, 1220, 2178, 2222, 2562, 2583, 2589
StyD4I	CCNGG	6 cut(s)	301, 348, 616, 948, 1367, 2452
StyI	CCWWGG	5 cut(s)	601, 1425, 1865, 1998, 2064
TaaI	ACNGT	8 cut(s)	1511, 1643, 1772, 1784, 2108, 2118, 2370, 2620
TaiI	ACGT	7 cut(s)	684, 1104, 1505, 1596, 1623, 1746, 1959
TaqII	GACCGA	1 cut(s)	858
TatI	WGTACW	6 cut(s)	770, 1159, 1623, 1839, 2100, 2139
TauI	GCSGC	3 cut(s)	117, 392, 1901
TfiI	GAWTC	8 cut(s)	549, 607, 675, 977, 1081, 1181, 1586, 2594
Tru1I	TTAA	4 cut(s)	1146, 2235, 2408, 2601
Tru9I	TTAA	4 cut(s)	1146, 2235, 2408, 2601
TscAI	CASTG	1 cut(s)	1930
TseFI	GTSAC	5 cut(s)	382, 427, 1739, 1772, 2551
TseI	GCWGC	5 cut(s)	590, 1166, 1343, 1565, 2225
Tsp45I	GTSAC	5 cut(s)	382, 427, 1739, 1772, 2551
TspRI	CASTG	1 cut(s)	1930
VpaK11BI	GGWCC	2 cut(s)	1262, 1821
XapI	RAATTY	7 cut(s)	176, 275, 288, 311, 467, 2281, 2578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1863
XhoI	CTCGAG	2 cut(s)	500, 1243
XmiI	GTMKAC	3 cut(s)	93, 1187, 1331
XspI	CTAG	7 cut(s)	1157, 1220, 2178, 2222, 2562, 2583, 2589
ZrmI	AGTACT	2 cut(s)	1161, 2102
Zsp2I	ATGCAT	1 cut(s)	2349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.