Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

43301831 .. 43303432

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGGTTAGGCTCCATTTTTGTGAGTTTGAACCTGAGATTGCCAACAATGGAGACCGAATATTTCAACTTTACATTGCTAATCAAACTGCTGAAAAAGAAGCGGACATAGTCATGTGGAGTGGTGGAAATGGGATTCCAACGTACAGAGACTATTTCGTGTTCATGTCTGACTCTGGAGGCCTGAGGAAAGTAAATCTTTCTGTCTCATTGCAAGCGAATTGGCAGACTACGTATCCTGATGCGATCTTGAATGGGCTCGAAATCTTCAAACTATTTGACTCTAACGGCAATAATATTGATCTGAATCTAGACCCACCACCAGAGGGGACACCACAAGCGCAAGCGCACAAAATTCCAAACCCACCAGAGGGGACACCACAAGCGCAAGTGCGCAAAATTCCAAACAAGTCGACTCCAGTGATTGCCATCGTTGCAGGTGTACTTTCCAGCATGCTTGTGTTTGTCCTCGGATTTTTGGTCATCAAGCGAAGATGGAAAGCCAACGACTCCAGCTCCAGAGACAGGACGACACGGTCTACCATGAACCTTGGATCACCATTACCATCTTATTTGTGTCGTTACTTTTCACTGGCAGAGATCAAGGCTGCCACCAAAAACTTCAATGATACTTCCATTATTGGAGCGGGAGGATTTGGCAACGTCTACAAAGGATGCATTGATGGTGGAGCCACTCCAGTTGCAATTAAACGACTAAAACCAGAGTCATCCCAGGGTGCCCACGAGTTTAAGACGGAAATTGAGATGCTCTCCCAACTTCGTCATCGCCATTTGGTTTCGCTCATTGGATATTGTGCTGAGAAAGGTGAGATGATCTTAGTGTATGATTACATGGCCTGTGGAACCCTTCGCGACCATCTCTACCACACCAATAACCCACCTCTTCCTTGGGAGCAGCGGCTTCAGATTTGTATTGGAACAGCCCGTGGGTTGCAATACCTCCACAGTGGTGCGAAGGGCACCATCATACACCGTGATGTGAAAAGCACAAACATCTTATTGGATGACAAATGGGTGGCCAAAGTTTCAGATTTTGGGTTGTCCAAGGGCACGAATACCATGTCCAAAACCCACATCAGCACGGTGGTGAAAGGCAGTTTTGGGTACCTGGACCCGGAATACTACCGCCGCCAACGTTTGACTGAGAAGTCAGACGTGTACTCACTTGGGGTACTGTTGTTTGAGGTGTTGTGTGCAAGGCCAGCAGTGATTCAGACAGAAGAGATTAAGCAAGTGAGCCTGGCTGAGTGGGCCAAGAGCTGTCATCAGAATGGGGAAATTGATCAAATCATTGATCCAAGTTTGAGAGGTAAGATCGCAGCCGAGTGCCTGAATAAGTTCGCCGAGATAGCTATCAGTTGCATGCATGACAATGGAACAGAACGGCCGTCCATGACTGATGTTGTTAGGGGCCTTGAACTTGCATTGCAGCTTCAGCAGAGTGCGGAAGGGAATATCAACTGCACTGAAAGGAATGTTGAAACTGAAACAAGCAGCAGTGAGCAAAGTTGTGCCACCAAAGATTCCATTAAATGTATATCTGCAACAATCTTCTCTGAGGTCAACAACTCGAGTGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

534

Amino Acids

59.0

Weight (kDa)

6.65

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	1 - 90	2.5e-07	Malectin-like domain
Pkinase	PF00069	208 - 475	2.2e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	211 - 477	1e-50	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	425
AasI	GACNNNNNNGTC	2 cut(s)	532, 1165
Acc16I	TGCGCA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	425
Acc65I	GGTACC	1 cut(s)	1122
AccB1I	GGYRCC	3 cut(s)	734, 977, 1122
AccBSI	CCGCTC	1 cut(s)	644
AccI	GTMKAC	3 cut(s)	410, 536, 663
AccII	CGCG	1 cut(s)	870
AciI	CCGC	6 cut(s)	101, 644, 916, 1144, 1147, 1463
AclI	AACGTT	1 cut(s)	1153
AclWI	GGATC	2 cut(s)	559, 1307
AcoI	YGGCCR	2 cut(s)	1035, 1403
AcsI	RAATTY	2 cut(s)	351, 396
AcuI	CTGAAG	2 cut(s)	905, 1436
AfaI	GTAC	5 cut(s)	143, 441, 1124, 1178, 1191
AfiI	CCNNNNNNNGG	5 cut(s)	323, 367, 368, 522, 1132
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	7 cut(s)	29, 65, 250, 268, 622, 1436, 1499
AjiI	CACGTC	1 cut(s)	1174
AjnI	CCWGG	3 cut(s)	729, 1125, 1257
AleI	CACNNNNGTG	2 cut(s)	966, 1103
AluBI	AGCT	4 cut(s)	513, 1278, 1370, 1450
AluI	AGCT	4 cut(s)	513, 1278, 1370, 1450
Alw26I	GTCTC	4 cut(s)	45, 141, 208, 513
AlwI	GGATC	2 cut(s)	559, 1307
Ama87I	CYCGRG	1 cut(s)	1588
AoxI	GGCC	7 cut(s)	178, 852, 1035, 1217, 1269, 1403, 1429
ApeKI	GCWGC	5 cut(s)	605, 913, 1337, 1447, 1512
ApoI	RAATTY	2 cut(s)	351, 396
ArsI	GACNNNNNNTTYG	2 cut(s)	1064, 1096
Asp700I	GAANNNNTTC	1 cut(s)	1355
Asp718I	GGTACC	1 cut(s)	1122
AspLEI	GCGC	4 cut(s)	340, 346, 385, 393
AspS9I	GGNCC	3 cut(s)	1129, 1269, 1429
AsuC2I	CCSGG	1 cut(s)	1133
AsuHPI	GGTGA	3 cut(s)	546, 836, 1117
AvaI	CYCGRG	1 cut(s)	1588
AvaII	GGWCC	1 cut(s)	1129
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	3 cut(s)	739, 980, 1070
BaeI	ACNNNNGTAYC	2 cut(s)	1181, 1214
BalI	TGGCCA	1 cut(s)	1037
BanI	GGYRCC	3 cut(s)	734, 977, 1122
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	740
BbvI	GCAGC	5 cut(s)	592, 925, 1349, 1459, 1524
BccI	CCATC	6 cut(s)	434, 486, 571, 674, 882, 989
BceAI	ACGGC	3 cut(s)	301, 1390, 1418
BciT130I	CCWGG	3 cut(s)	731, 1127, 1259
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	1300
BcnI	CCSGG	1 cut(s)	1133
BcoDI	GTCTC	4 cut(s)	45, 141, 208, 513
BfaI	CTAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	7 cut(s)	606, 914, 917, 1147, 1338, 1448, 1513
BlsI	GCNGC	7 cut(s)	607, 915, 918, 1148, 1339, 1449, 1514
Bme1390I	CCNGG	4 cut(s)	731, 1127, 1133, 1259
Bme18I	GGWCC	1 cut(s)	1129
BmeT110I	CYCGRG	1 cut(s)	1588
BmgBI	CACGTC	1 cut(s)	1174
BmgT120I	GGNCC	3 cut(s)	1129, 1269, 1429
BmiI	GGNNCC	8 cut(s)	11, 688, 736, 862, 979, 1124, 1131, 1430
BmrFI	CCNGG	4 cut(s)	731, 1127, 1133, 1259
BmsI	GCATC	3 cut(s)	229, 662, 753
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpmI	CTGGAG	5 cut(s)	195, 399, 493, 499, 678
BpuMI	CCSGG	1 cut(s)	1133
BsaAI	YACGTR	1 cut(s)	231
BsaBI	GATNNNNATC	3 cut(s)	303, 425, 1370
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	7 cut(s)	466, 547, 729, 730, 905, 943, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	5 cut(s)	323, 367, 368, 522, 1132
Bse1I	ACTGG	3 cut(s)	416, 594, 695
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	3 cut(s)	72, 206, 1442
Bse8I	GATNNNNATC	3 cut(s)	303, 425, 1370
BseBI	CCWGG	3 cut(s)	731, 1127, 1259
BseDI	CCNNGG	7 cut(s)	466, 547, 729, 730, 905, 943, 1062
BseGI	GGATG	3 cut(s)	677, 725, 1027
BseJI	GATNNNNATC	3 cut(s)	303, 425, 1370
BseLI	CCNNNNNNNGG	5 cut(s)	323, 367, 368, 522, 1132
BseMI	GCAATG	3 cut(s)	72, 206, 1442
BseMII	CTCAG	6 cut(s)	24, 173, 807, 1152, 1254, 1566
BseNI	ACTGG	3 cut(s)	416, 594, 695
BseSI	GKGCMC	3 cut(s)	739, 980, 1070
BseX3I	CGGCCG	1 cut(s)	1403
BseXI	GCAGC	5 cut(s)	592, 925, 1349, 1459, 1524
BsgI	GTGCAG	1 cut(s)	1465
Bsh1236I	CGCG	1 cut(s)	870
Bsh1285I	CGRYCG	1 cut(s)	1406
BshFI	GGCC	7 cut(s)	180, 854, 1037, 1219, 1271, 1405, 1431
BshNI	GGYRCC	3 cut(s)	734, 977, 1122
BsiEI	CGRYCG	1 cut(s)	1406
BsiHKCI	CYCGRG	1 cut(s)	1588
BsiSI	CCGG	1 cut(s)	1133
BslFI	GGGAC	2 cut(s)	340, 385
BslI	CCNNNNNNNGG	5 cut(s)	323, 367, 368, 522, 1132
BsmAI	GTCTC	4 cut(s)	45, 141, 208, 513
BsmFI	GGGAC	2 cut(s)	340, 385
BsnI	GGCC	7 cut(s)	180, 854, 1037, 1219, 1271, 1405, 1431
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	1588
Bsp1286I	GDGCHC	4 cut(s)	258, 739, 980, 1070
Bsp143I	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
Bsp68I	TCGCGA	1 cut(s)	870
BspACI	CCGC	6 cut(s)	101, 644, 916, 1144, 1147, 1463
BspANI	GGCC	7 cut(s)	180, 854, 1037, 1219, 1271, 1405, 1431
BspCNI	CTCAG	6 cut(s)	25, 174, 808, 1153, 1255, 1567
BspFNI	CGCG	1 cut(s)	870
BspLI	GGNNCC	8 cut(s)	11, 688, 736, 862, 979, 1124, 1131, 1430
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	559, 1307
BspT107I	GGYRCC	3 cut(s)	734, 977, 1122
BspTNI	GGTCTC	1 cut(s)	45
BsrBI	CCGCTC	1 cut(s)	644
BsrDI	GCAATG	3 cut(s)	72, 206, 1442
BsrI	ACTGG	3 cut(s)	416, 594, 695
BssECI	CCNNGG	7 cut(s)	466, 547, 729, 730, 905, 943, 1062
BssMI	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
BssSI	CACGAG	1 cut(s)	740
BssT1I	CCWWGG	3 cut(s)	547, 905, 1062
Bst2BI	CACGAG	1 cut(s)	740
Bst2UI	CCWGG	3 cut(s)	731, 1127, 1259
Bst4CI	ACNGT	5 cut(s)	534, 965, 992, 1102, 1194
Bst6I	CTCTTC	2 cut(s)	906, 1233
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	213, 342, 452, 1221, 1382
BstDEI	CTNAG	7 cut(s)	33, 182, 816, 835, 1161, 1263, 1575
BstDSI	CCRYGG	1 cut(s)	943
BstF5I	GGATG	3 cut(s)	677, 725, 1027
BstFNI	CGCG	1 cut(s)	870
BstHHI	GCGC	4 cut(s)	340, 346, 385, 393
BstKTI	GATC	8 cut(s)	246, 301, 554, 600, 834, 1303, 1315, 1335
BstMAI	GTCTC	4 cut(s)	45, 141, 208, 513
BstMBI	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
BstMCI	CGRYCG	1 cut(s)	1406
BstMWI	GCNNNNNNNGC	5 cut(s)	431, 1220, 1268, 1367, 1453
BstNI	CCWGG	3 cut(s)	731, 1127, 1259
BstNSI	RCATGY	2 cut(s)	454, 1384
BstSCI	CCNGG	4 cut(s)	729, 1125, 1131, 1257
BstSLI	GKGCMC	3 cut(s)	739, 980, 1070
BstSNI	TACGTA	1 cut(s)	231
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	5 cut(s)	592, 925, 1349, 1459, 1524
BstZI	CGGCCG	1 cut(s)	1403
Bsu36I	CCTNAGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	7 cut(s)	180, 854, 1037, 1219, 1271, 1405, 1431
BtgI	CCRYGG	1 cut(s)	943
BtgZI	GCGATG	1 cut(s)	767
BtrI	CACGTC	1 cut(s)	1174
BtsCI	GGATG	3 cut(s)	677, 725, 1027
BtsI	GCAGTG	2 cut(s)	1230, 1522
BtsIMutI	CAGTG	6 cut(s)	423, 587, 970, 1230, 1482, 1522
BtuMI	TCGCGA	1 cut(s)	870
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	5 cut(s)	213, 342, 452, 1221, 1382
CfoI	GCGC	4 cut(s)	340, 346, 385, 393
Cfr13I	GGNCC	3 cut(s)	1129, 1269, 1429
Csp6I	GTAC	5 cut(s)	142, 440, 1123, 1177, 1190
CspCI	CAANNNNNGTGG	3 cut(s)	679, 714, 1573
CviAII	CATG	9 cut(s)	112, 163, 451, 541, 850, 1078, 1381, 1385, 1411
CviQI	GTAC	5 cut(s)	142, 440, 1123, 1177, 1190
DdeI	CTNAG	7 cut(s)	33, 182, 816, 835, 1161, 1263, 1575
DpnI	GATC	8 cut(s)	245, 300, 553, 599, 833, 1302, 1314, 1334
DpnII	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
DrdI	GACNNNNNNGTC	2 cut(s)	532, 1165
DseDI	GACNNNNNNGTC	2 cut(s)	532, 1165
EaeI	YGGCCR	2 cut(s)	1035, 1403
EagI	CGGCCG	1 cut(s)	1403
Eam1104I	CTCTTC	2 cut(s)	906, 1233
EarI	CTCTTC	2 cut(s)	906, 1233
EclXI	CGGCCG	1 cut(s)	1403
Eco105I	TACGTA	1 cut(s)	231
Eco130I	CCWWGG	3 cut(s)	547, 905, 1062
Eco147I	AGGCCT	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	1129
Eco52I	CGGCCG	1 cut(s)	1403
Eco57I	CTGAAG	2 cut(s)	905, 1436
Eco81I	CCTNAGG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	1588
EcoO109I	RGGNCCY	1 cut(s)	1429
EcoRII	CCWGG	3 cut(s)	729, 1125, 1257
EcoT14I	CCWWGG	3 cut(s)	547, 905, 1062
EcoT22I	ATGCAT	2 cut(s)	677, 1386
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	3 cut(s)	547, 905, 1062
FaeI	CATG	9 cut(s)	115, 166, 454, 544, 853, 1081, 1384, 1388, 1414
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	2 cut(s)	340, 385
FatI	CATG	9 cut(s)	111, 162, 450, 540, 849, 1077, 1380, 1384, 1410
FauI	CCCGC	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	1300
FblI	GTMKAC	3 cut(s)	410, 536, 663
Fnu4HI	GCNGC	7 cut(s)	606, 914, 917, 1147, 1338, 1448, 1513
FokI	GGATG	3 cut(s)	684, 712, 1034
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	7 cut(s)	606, 914, 917, 1147, 1338, 1448, 1513
FspBI	CTAG	1 cut(s)	308
FspI	TGCGCA	1 cut(s)	392
GlaI	GCGC	4 cut(s)	339, 345, 384, 392
GluI	GCNGC	7 cut(s)	606, 914, 917, 1147, 1338, 1448, 1513
GsuI	CTGGAG	5 cut(s)	195, 399, 493, 499, 678
HaeIII	GGCC	7 cut(s)	180, 854, 1037, 1219, 1271, 1405, 1431
HapII	CCGG	1 cut(s)	1133
HhaI	GCGC	4 cut(s)	340, 346, 385, 393
Hin1II	CATG	9 cut(s)	115, 166, 454, 544, 853, 1081, 1384, 1388, 1414
Hin6I	GCGC	4 cut(s)	338, 344, 383, 391
HinP1I	GCGC	4 cut(s)	338, 344, 383, 391
HincII	GTYRAC	2 cut(s)	411, 1582
HindII	GTYRAC	2 cut(s)	411, 1582
HinfI	GANTC	9 cut(s)	133, 170, 278, 304, 412, 506, 722, 1228, 1541
HpaII	CCGG	1 cut(s)	1133
HphI	GGTGA	3 cut(s)	546, 836, 1117
Hpy166II	GTNNAC	6 cut(s)	411, 440, 537, 664, 1177, 1582
Hpy188I	TCNGA	9 cut(s)	169, 303, 470, 924, 1048, 1171, 1233, 1287, 1576
Hpy188III	TCNNGA	6 cut(s)	174, 236, 247, 308, 516, 869
Hpy8I	GTNNAC	6 cut(s)	411, 440, 537, 664, 1177, 1582
HpyAV	CCTTC	3 cut(s)	875, 967, 1460
HpyCH4III	ACNGT	5 cut(s)	534, 965, 992, 1102, 1194
HpyCH4IV	ACGT	5 cut(s)	140, 230, 660, 1153, 1173
HpyF10VI	GCNNNNNNNGC	5 cut(s)	431, 1220, 1268, 1367, 1453
HpyF3I	CTNAG	7 cut(s)	33, 182, 816, 835, 1161, 1263, 1575
HpySE526I	ACGT	5 cut(s)	140, 230, 660, 1153, 1173
Hsp92II	CATG	9 cut(s)	115, 166, 454, 544, 853, 1081, 1384, 1388, 1414
HspAI	GCGC	4 cut(s)	338, 344, 383, 391
KpnI	GGTACC	1 cut(s)	1126
Ksp22I	TGATCA	1 cut(s)	1300
Kzo9I	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
LmnI	GCTCC	5 cut(s)	15, 518, 641, 686, 910
Lsp1109I	GCAGC	5 cut(s)	592, 925, 1349, 1459, 1524
LweI	GCATC	3 cut(s)	229, 662, 753
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	5 cut(s)	140, 230, 660, 1153, 1173
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	8 cut(s)	245, 300, 553, 599, 833, 1302, 1314, 1334
MbiI	CCGCTC	1 cut(s)	644
MboI	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
MboII	GAAGA	5 cut(s)	256, 501, 893, 1250, 1561
MhlI	GDGCHC	4 cut(s)	258, 739, 980, 1070
MlsI	TGGCCA	1 cut(s)	1037
MluCI	AATT	6 cut(s)	217, 351, 396, 702, 756, 1296
MluNI	TGGCCA	1 cut(s)	1037
MlyI	GAGTC	5 cut(s)	164, 272, 406, 500, 731
MmeI	TCCRAC	1 cut(s)	161
Mox20I	TGGCCA	1 cut(s)	1037
Mph1103I	ATGCAT	2 cut(s)	677, 1386
MroXI	GAANNNNTTC	1 cut(s)	1355
MscI	TGGCCA	1 cut(s)	1037
MseI	TTAA	4 cut(s)	705, 747, 1245, 1548
MslI	CAYNNNNRTG	8 cut(s)	18, 110, 455, 966, 993, 1103, 1287, 1389
Msp20I	TGGCCA	1 cut(s)	1037
MspA1I	CMGCKG	1 cut(s)	916
MspI	CCGG	1 cut(s)	1133
MspR9I	CCNGG	4 cut(s)	731, 1127, 1133, 1259
MvaI	CCWGG	3 cut(s)	731, 1127, 1259
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	5 cut(s)	431, 1220, 1268, 1367, 1453
NciI	CCSGG	1 cut(s)	1133
NdeII	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
NlaIII	CATG	9 cut(s)	115, 166, 454, 544, 853, 1081, 1384, 1388, 1414
NlaIV	GGNNCC	8 cut(s)	11, 688, 736, 862, 979, 1124, 1131, 1430
NmeAIII	GCCGAG	2 cut(s)	1366, 1387
NruI	TCGCGA	1 cut(s)	870
NsbI	TGCGCA	1 cut(s)	392
NsiI	ATGCAT	2 cut(s)	677, 1386
NspI	RCATGY	2 cut(s)	454, 1384
OliI	CACNNNNGTG	2 cut(s)	966, 1103
PaeI	GCATGC	2 cut(s)	454, 1384
PaeR7I	CTCGAG	1 cut(s)	1588
PaqCI	CACCTGC	1 cut(s)	425
PasI	CCCWGGG	1 cut(s)	730
PceI	AGGCCT	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	1355
PfeI	GAWTC	4 cut(s)	133, 304, 1228, 1541
PflFI	GACNNNGTC	2 cut(s)	107, 532
PkrI	GCNGC	7 cut(s)	607, 915, 918, 1148, 1339, 1449, 1514
PleI	GAGTC	5 cut(s)	164, 272, 406, 500, 730
PpsI	GAGTC	5 cut(s)	164, 272, 406, 500, 730
Ppu21I	YACGTR	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	1153
Psp6I	CCWGG	3 cut(s)	729, 1125, 1257
PspGI	CCWGG	3 cut(s)	729, 1125, 1257
PspN4I	GGNNCC	8 cut(s)	11, 688, 736, 862, 979, 1124, 1131, 1430
PspPI	GGNCC	3 cut(s)	1129, 1269, 1429
PspXI	VCTCGAGB	1 cut(s)	1588
PsyI	GACNNNGTC	2 cut(s)	107, 532
RruI	TCGCGA	1 cut(s)	870
RsaI	GTAC	5 cut(s)	143, 441, 1124, 1178, 1191
RsaNI	GTAC	5 cut(s)	142, 440, 1123, 1177, 1190
RseI	CAYNNNNRTG	8 cut(s)	18, 110, 455, 966, 993, 1103, 1287, 1389
SalI	GTCGAC	1 cut(s)	409
SaqAI	TTAA	4 cut(s)	705, 747, 1245, 1548
SatI	GCNGC	7 cut(s)	606, 914, 917, 1147, 1338, 1448, 1513
Sau3AI	GATC	8 cut(s)	243, 298, 551, 597, 831, 1300, 1312, 1332
Sau96I	GGNCC	3 cut(s)	1129, 1269, 1429
SchI	GAGTC	5 cut(s)	164, 272, 406, 500, 731
ScrFI	CCNGG	4 cut(s)	731, 1127, 1133, 1259
SduI	GDGCHC	4 cut(s)	258, 739, 980, 1070
SfaNI	GCATC	3 cut(s)	229, 662, 753
Sfr274I	CTCGAG	1 cut(s)	1588
SinI	GGWCC	1 cut(s)	1129
SlaI	CTCGAG	1 cut(s)	1588
SmiMI	CAYNNNNRTG	8 cut(s)	18, 110, 455, 966, 993, 1103, 1287, 1389
SmlI	CTYRAG	1 cut(s)	1588
SmoI	CTYRAG	1 cut(s)	1588
SnaBI	TACGTA	1 cut(s)	231
SphI	GCATGC	2 cut(s)	454, 1384
Sse9I	AATT	6 cut(s)	217, 351, 396, 702, 756, 1296
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	6 cut(s)	101, 644, 916, 1144, 1147, 1463
SspI	AATATT	2 cut(s)	60, 295
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	4 cut(s)	729, 1125, 1131, 1257
StyI	CCWWGG	3 cut(s)	547, 905, 1062
TaaI	ACNGT	5 cut(s)	534, 965, 992, 1102, 1194
TaiI	ACGT	5 cut(s)	143, 233, 663, 1156, 1176
TaqI	TCGA	3 cut(s)	258, 410, 1589
TaqII	GACCGA	1 cut(s)	69
TasI	AATT	6 cut(s)	217, 351, 396, 702, 756, 1296
TatI	WGTACW	2 cut(s)	439, 1176
TauI	GCSGC	2 cut(s)	919, 1149
TfiI	GAWTC	4 cut(s)	133, 304, 1228, 1541
Tru1I	TTAA	4 cut(s)	705, 747, 1245, 1548
Tru9I	TTAA	4 cut(s)	705, 747, 1245, 1548
TscAI	CASTG	6 cut(s)	423, 594, 970, 1230, 1489, 1522
TseI	GCWGC	5 cut(s)	605, 913, 1337, 1447, 1512
TspDTI	ATGAA	2 cut(s)	151, 557
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	6 cut(s)	423, 594, 970, 1230, 1489, 1522
Tth111I	GACNNNGTC	2 cut(s)	107, 532
VpaK11BI	GGWCC	1 cut(s)	1129
XapI	RAATTY	2 cut(s)	351, 396
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	2 cut(s)	454, 1384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	903
XhoI	CTCGAG	1 cut(s)	1588
XmiI	GTMKAC	3 cut(s)	410, 536, 663
XmnI	GAANNNNTTC	1 cut(s)	1355
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	2 cut(s)	677, 1386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.