Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

53706270 .. 53708957

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGAGCAGAGTAACTTCCCCTGTTTCCAACTTCATCCTTACCCTCTCGATCATCTCTCTCCCTACGATGAAACCAATCATCACTCGTCTCTACCTCTACTTGTTCCTCCACATCCTCACTCTCTTCGTCACCGGTCAGTCGCCACCATACATTCCGGTCGACAATATCACCCTCGCCTGCGGCAGTTCCGGCCAATCGAGCTCCAATGGCCTCAGAAAGTGGAGTGGAGATATCGACTCAGAATTCACCCCAATAGGTAACGCATCCCAATCCATCGATGCACCGCGATCGTCCACCCCTAGCCAAGTCCCTTACACCAAAGCTCGGCTCTCTCGCTCCCGATTCACTTACAGAATTCCCCTCTCTCCCGGCCAAAAATTCATCCGCTTGCATTTCAATCCAGATACATACAACCCGAACTTCCGACGCTCCAATTCCCTCTTCTCCGTCACCGCCGCCGGCTTCACTCTCCTCAAAGACTTCAACGCCTCCGTCACCGCCGACGCTTCCCGCAGGTCCCCGCTGGTCAGAGAATTCTGTGTAAACATCAAGACAGGACAGAGACTCGAGATCACCTTCATACCAAGCAAAGATGCGTACGCTTTCATCAACGGAATCGAAATCGTGTCCATGCCCACCGGTTTTTACTATACAAATTCAGCCCATTTCGTCGACACCAGCGCAAGCACATATCCGATCGGAAACAACACAGCTCTGGAGATGGTGTACCGAATCAACGTCGGCGGAGGCCCCATCTCGCCGGAAGAAGACACCGGAATGTACCGGAATTGGGACACCGCCGACGAAATTTATTTGGATAATTTAAGTAAAAAATTGAGCGAGCTACCACAGAACGATACAATCGAGCTCAACTTTGTCAAAGTTCCAAAATACTCTGCCCCGAAACCAGTTTACATAACAGGTCGGTCAATGGGGATGTACAAAAATATCAACAAGCGCTATAACCTCACATGGGTATTTCCCTTGGATCCCCAGTTTTATTACCTGGTGAGACTCCATTTCTGTGAGTTTGAATCTGATATTACCGAGTCCAGAGATCGAGCGTTTCAAATCTTCATGGCCAATCAAATCGCAGAAAATATTTTTGATGTTGTCGCGGAGAGCGGAGCAAATGGGAATCCAGTTTACAGAGACTACGTTGTGAGCATGTTCACGTCTCCGGTTGGAAGCGAGAAGAAAGTTAACCTCTCTCTAGTACTCTCAGCGCTCAAGAGAGATTCGCATACTACTTACAACGATGCCATCTTGAACGGGCTAGAAATCTTCAAGCTCAACGACTCGAGTGGGAATCTTGCCGGACCCAACCCCGACCCGCTCCCGGTGGACGCAGCAAAGGTACAACCGAAGAAGAAGTCTACCCCTATGGCAGCTATTATTGCAGGTGTAGTTTCGGGGTTACTTATGCTCTCTCTTCTCGGATTTTTTGTTTTCCGGCGAGGGAGAAAGGCCAAGGACTATAGCTCAGGTCAAGTAAAGTGGGGTCTGCTTTCTTTTCCAACGACTACTAAGTCCACCACGTCTTACGGTTCATCTCTGCCGTCCGAGCTGTGTCATCGCTTTTCATTCCCGGAGATCAGAGCCGCCACGCAAAACTTTGATGATTCGAACGTTATTGGGGTTGGCGGGTTTGGTAACGTGTACAAAGGTACCATCAACGGTGCGTCCAGCCCCTTTGCGATCAAACGGCTGAAAGCGGAGTCGTCACAGGGTGCCCTTGAGTTCAAGACGGAGATCGAATTGCTCTCCCAACTCCGTCACGTCCATCTCGTGTCTCTGGTCGGGTACTGTGACGACAACGGTGAGATGATTTTGGTGTATGACTATATGGAAAATGGGACCCTACGCGATCATTTGTACGACTCCGAAAATCCACCTCTTCCTTGGGAACAAAGGCTTCAAGTTTGTATTGGCGCGGCGCGTGGGTTGCACTACCTTCACACTGGTGTCAAGTGTATGATCATCCACCGAGACGTGAAGAGCACGAACATCTTGCTGGACGATAAATGGGTGGCCAAGGTCGCCGATTTCGGGTTGTCGAAAATGGGCACGACCACCATGTCCAAGACCCACATTAGCACCATGGTCAAAGGCAGTTTCGGCTATCTCGACCCGGAGTACTACCGTCGTCAACAGTTGACTGAGAAGTCTGATGTGTACTCGTTCGGCGTAGTATTGTGTGAGGTGTTGTGTGCTAGACCGGCTTTGATCCGTACAGCGGACAAGAAGCAAATGAACCTAGCTGCATGGTTTAAGACCTGTCATGGAAACGGAGCGCTTGACCAAATCATTGACCCGAATTTGAGGGGTGAGATTGTAAATGAGTGCTTGAACAAGTTTGTTGAAATTGCAATTAGTTGCATGCATGATAATAGGAGTGAACGACCGTCCATGAAGGATGTTATATGGGCGCTTGAGTGTGCATTAAAACTTCAACAGACCGCAGAGGGTTCGGATTTGGATTTCAATGCTGGAAAAAAGCGTGAAGATGAGGCTTCACTGGTGAATGATAGTGATGCAGGGTTTAGTGGCACATGGGAAGACTCGTCAAGTTCGAAGAATAGCAAGGTGAGCAAAACTAGTAGTAGTTACCAAAATTCCAGTGCTAGTGATTCCATTAAAGGGTTGTCAGGTACAGTCTTCTCTGAGATCGATTCCAATGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

895

Amino Acids

99.28

Weight (kDa)

8.04

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	59 - 430	1.5e-30	Malectin-like domain
Pkinase	PF00069	541 - 807	1.1e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	543 - 809	6.4e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1391
AasI	GACNNNNNNGTC	3 cut(s)	1528, 2077, 2164
Acc36I	ACCTGC	2 cut(s)	504, 1391
Acc65I	GGTACC	1 cut(s)	1667
AccB1I	GGYRCC	2 cut(s)	1667, 1730
AccBSI	CCGCTC	2 cut(s)	1125, 1336
AccI	GTMKAC	3 cut(s)	159, 672, 1376
AccII	CGCG	5 cut(s)	286, 1118, 1866, 1934, 1939
AclI	AACGTT	1 cut(s)	1629
AclWI	GGATC	3 cut(s)	983, 996, 2221
AcoI	YGGCCR	4 cut(s)	190, 370, 1080, 2031
AcsI	RAATTY	8 cut(s)	242, 354, 377, 533, 655, 807, 2317, 2614
AdeI	CACNNNGTG	1 cut(s)	1730
AfeI	AGCGCT	3 cut(s)	959, 1227, 2295
AfiI	CCNNNNNNNGG	7 cut(s)	324, 790, 973, 1339, 2049, 2236, 2640
AflIII	ACRYGT	1 cut(s)	1656
AgeI	ACCGGT	2 cut(s)	131, 638
AhlI	ACTAGT	1 cut(s)	2597
AjiI	CACGTC	4 cut(s)	1176, 1539, 1780, 1993
AjnI	CCWGG	1 cut(s)	1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AleI	CACNNNNGTG	1 cut(s)	1962
Alw21I	GWGCWC	3 cut(s)	203, 870, 2003
Alw26I	GTCTC	7 cut(s)	92, 556, 1006, 1146, 1182, 1797, 1983
AlwI	GGATC	3 cut(s)	983, 996, 2221
Ama87I	CYCGRG	2 cut(s)	566, 1300
Aor51HI	AGCGCT	3 cut(s)	959, 1227, 2295
AoxI	GGCC	7 cut(s)	190, 208, 370, 748, 1080, 1467, 2031
ApeKI	GCWGC	3 cut(s)	1349, 1388, 2261
ApoI	RAATTY	8 cut(s)	242, 354, 377, 533, 655, 807, 2317, 2614
ArsI	GACNNNNNNTTYG	2 cut(s)	1358, 1390
AsiGI	ACCGGT	2 cut(s)	131, 638
Asp718I	GGTACC	1 cut(s)	1667
AspLEI	GCGC	7 cut(s)	683, 960, 1228, 1934, 1939, 2296, 2431
AspS9I	GGNCC	4 cut(s)	516, 749, 1319, 1857
AsuC2I	CCSGG	4 cut(s)	369, 1340, 1589, 2132
AsuII	TTCGAA	2 cut(s)	1625, 2573
AvaI	CYCGRG	2 cut(s)	566, 1300
AvaII	GGWCC	3 cut(s)	516, 1319, 1857
BaeGI	GKGCMC	2 cut(s)	1735, 2069
BaeI	ACNNNNGTAYC	2 cut(s)	1651, 1684
BalI	TGGCCA	2 cut(s)	1082, 2033
BamHI	GGATCC	1 cut(s)	988
BanI	GGYRCC	2 cut(s)	1667, 1730
BanII	GRGCYC	2 cut(s)	203, 870
BauI	CACGAG	1 cut(s)	1787
BbsI	GAAGAC	3 cut(s)	774, 2565, 2650
Bbv12I	GWGCWC	3 cut(s)	203, 870, 2003
BbvI	GCAGC	3 cut(s)	1361, 1400, 2248
BccI	CCATC	6 cut(s)	281, 715, 761, 1271, 1679, 1791
BceAI	ACGGC	2 cut(s)	1543, 1721
BcgI	CGANNNNNNTGC	6 cut(s)	270, 304, 1993, 2027, 2451, 2485
BciT130I	CCWGG	1 cut(s)	1007
BclI	TGATCA	1 cut(s)	1977
BcnI	CCSGG	4 cut(s)	369, 1340, 1589, 2132
BcoDI	GTCTC	7 cut(s)	92, 556, 1006, 1146, 1182, 1797, 1983
BcuI	ACTAGT	1 cut(s)	2597
BfaI	CTAG	7 cut(s)	300, 1214, 1277, 2214, 2258, 2598, 2625
BfmI	CTRYAG	1 cut(s)	1477
BfoI	RGCGCY	4 cut(s)	961, 1229, 2297, 2432
BfuAI	ACCTGC	2 cut(s)	504, 1391
BisI	GCNGC	7 cut(s)	181, 456, 1350, 1389, 1602, 1935, 2262
BlsI	GCNGC	7 cut(s)	182, 457, 1351, 1390, 1603, 1936, 2263
BmcAI	AGTACT	2 cut(s)	1218, 2138
Bme1390I	CCNGG	5 cut(s)	369, 1007, 1340, 1589, 2132
Bme18I	GGWCC	3 cut(s)	516, 1319, 1857
BmeT110I	CYCGRG	2 cut(s)	566, 1300
BmgBI	CACGTC	4 cut(s)	1176, 1539, 1780, 1993
BmgT120I	GGNCC	4 cut(s)	516, 749, 1319, 1857
BmiI	GGNNCC	8 cut(s)	518, 751, 990, 1321, 1669, 1732, 1858, 1859
BmrFI	CCNGG	5 cut(s)	369, 1007, 1340, 1589, 2132
BmrI	ACTGGG	1 cut(s)	988
BmsI	GCATC	5 cut(s)	268, 272, 583, 1249, 2524
BmuI	ACTGGG	1 cut(s)	988
BpiI	GAAGAC	3 cut(s)	774, 2565, 2650
BpmI	CTGGAG	1 cut(s)	737
Bpu10I	CCTNAGC	1 cut(s)	1483
Bpu14I	TTCGAA	2 cut(s)	1625, 2573
BpuEI	CTTGAG	3 cut(s)	1214, 1757, 2453
BpuMI	CCSGG	4 cut(s)	369, 1340, 1589, 2132
Bsa29I	ATCGAT	2 cut(s)	276, 2670
BsaJI	CCNNGG	5 cut(s)	984, 1470, 1901, 2034, 2100
BsaWI	WCCGGW	6 cut(s)	131, 154, 638, 773, 783, 1180
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	7 cut(s)	324, 790, 973, 1339, 2049, 2236, 2640
Bse118I	RCCGGY	4 cut(s)	131, 458, 638, 2218
Bse1I	ACTGG	6 cut(s)	908, 994, 1142, 1966, 2523, 2619
BseBI	CCWGG	1 cut(s)	1007
BseCI	ATCGAT	2 cut(s)	276, 2670
BseDI	CCNNGG	5 cut(s)	984, 1470, 1901, 2034, 2100
BseGI	GGATG	7 cut(s)	33, 111, 263, 381, 942, 1980, 2422
BseLI	CCNNNNNNNGG	7 cut(s)	324, 790, 973, 1339, 2049, 2236, 2640
BseMII	CTCAG	6 cut(s)	226, 252, 1236, 1497, 2151, 2655
BseNI	ACTGG	6 cut(s)	908, 994, 1142, 1966, 2523, 2619
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	2 cut(s)	1735, 2069
BseXI	GCAGC	3 cut(s)	1361, 1400, 2248
Bsh1236I	CGCG	5 cut(s)	286, 1118, 1866, 1934, 1939
Bsh1285I	CGRYCG	4 cut(s)	159, 290, 699, 2405
BshFI	GGCC	7 cut(s)	192, 210, 372, 750, 1082, 1469, 2033
BshNI	GGYRCC	2 cut(s)	1667, 1730
BshTI	ACCGGT	2 cut(s)	131, 638
BshVI	ATCGAT	2 cut(s)	276, 2670
BsiEI	CGRYCG	4 cut(s)	159, 290, 699, 2405
BsiHKAI	GWGCWC	3 cut(s)	203, 870, 2003
BsiHKCI	CYCGRG	2 cut(s)	566, 1300
BsiWI	CGTACG	1 cut(s)	597
BslFI	GGGAC	4 cut(s)	293, 502, 806, 1870
BslI	CCNNNNNNNGG	7 cut(s)	324, 790, 973, 1339, 2049, 2236, 2640
BsmAI	GTCTC	7 cut(s)	92, 556, 1006, 1146, 1182, 1797, 1983
BsmBI	CGTCTC	3 cut(s)	92, 1182, 1983
BsmFI	GGGAC	4 cut(s)	293, 502, 806, 1870
BsnI	GGCC	7 cut(s)	192, 210, 372, 750, 1082, 1469, 2033
BsoBI	CYCGRG	2 cut(s)	566, 1300
Bsp119I	TTCGAA	2 cut(s)	1625, 2573
Bsp1286I	GDGCHC	5 cut(s)	203, 870, 1735, 2003, 2069
Bsp1407I	TGTACA	2 cut(s)	939, 1659
Bsp19I	CCATGG	1 cut(s)	2100
BspANI	GGCC	7 cut(s)	192, 210, 372, 750, 1082, 1469, 2033
BspCNI	CTCAG	6 cut(s)	225, 251, 1235, 1496, 2152, 2656
BspDI	ATCGAT	2 cut(s)	276, 2670
BspFNI	CGCG	5 cut(s)	286, 1118, 1866, 1934, 1939
BspLI	GGNNCC	8 cut(s)	518, 751, 990, 1321, 1669, 1732, 1858, 1859
BspMI	ACCTGC	2 cut(s)	504, 1391
BspPI	GGATC	3 cut(s)	983, 996, 2221
BspQI	GCTCTTC	1 cut(s)	1991
BspT104I	TTCGAA	2 cut(s)	1625, 2573
BspT107I	GGYRCC	2 cut(s)	1667, 1730
BsrBI	CCGCTC	2 cut(s)	1125, 1336
BsrFI	RCCGGY	4 cut(s)	131, 458, 638, 2218
BsrGI	TGTACA	2 cut(s)	939, 1659
BsrI	ACTGG	6 cut(s)	908, 994, 1142, 1966, 2523, 2619
BssAI	RCCGGY	4 cut(s)	131, 458, 638, 2218
BssECI	CCNNGG	5 cut(s)	984, 1470, 1901, 2034, 2100
BssSI	CACGAG	1 cut(s)	1787
BssT1I	CCWWGG	5 cut(s)	984, 1470, 1901, 2034, 2100
Bst2BI	CACGAG	1 cut(s)	1787
Bst2UI	CCWGG	1 cut(s)	1007
Bst4CI	ACNGT	8 cut(s)	1547, 1679, 1808, 1820, 2144, 2154, 2406, 2656
Bst6I	CTCTTC	5 cut(s)	128, 446, 1437, 1902, 1991
BstAUI	TGTACA	2 cut(s)	939, 1659
BstBI	TTCGAA	2 cut(s)	1625, 2573
BstC8I	GCNNGC	6 cut(s)	178, 389, 460, 685, 842, 2381
BstDEI	CTNAG	7 cut(s)	212, 238, 1222, 1483, 1527, 2160, 2664
BstDSI	CCRYGG	1 cut(s)	2100
BstF5I	GGATG	7 cut(s)	33, 111, 263, 381, 942, 1980, 2422
BstFNI	CGCG	5 cut(s)	286, 1118, 1866, 1934, 1939
BstH2I	RGCGCY	4 cut(s)	961, 1229, 2297, 2432
BstHHI	GCGC	7 cut(s)	683, 960, 1228, 1934, 1939, 2296, 2431
BstMAI	GTCTC	7 cut(s)	92, 556, 1006, 1146, 1182, 1797, 1983
BstMCI	CGRYCG	4 cut(s)	159, 290, 699, 2405
BstNI	CCWGG	1 cut(s)	1007
BstNSI	RCATGY	2 cut(s)	1171, 2383
BstSCI	CCNGG	5 cut(s)	367, 1005, 1338, 1587, 2130
BstSFI	CTRYAG	1 cut(s)	1477
BstSLI	GKGCMC	2 cut(s)	1735, 2069
BstUI	CGCG	5 cut(s)	286, 1118, 1866, 1934, 1939
BstV1I	GCAGC	3 cut(s)	1361, 1400, 2248
BstV2I	GAAGAC	3 cut(s)	774, 2565, 2650
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
Bsu15I	ATCGAT	2 cut(s)	276, 2670
BsuRI	GGCC	7 cut(s)	192, 210, 372, 750, 1082, 1469, 2033
BsuTUI	ATCGAT	2 cut(s)	276, 2670
BtgI	CCRYGG	1 cut(s)	2100
BtgZI	GCGATG	1 cut(s)	1559
BtrI	CACGTC	4 cut(s)	1176, 1539, 1780, 1993
BtsCI	GGATG	7 cut(s)	33, 111, 263, 381, 942, 1980, 2422
BtsIMutI	CAGTG	3 cut(s)	1959, 2516, 2626
BveI	ACCTGC	2 cut(s)	504, 1391
Cac8I	GCNNGC	6 cut(s)	178, 389, 460, 685, 842, 2381
CfoI	GCGC	7 cut(s)	683, 960, 1228, 1934, 1939, 2296, 2431
Cfr10I	RCCGGY	4 cut(s)	131, 458, 638, 2218
Cfr13I	GGNCC	4 cut(s)	516, 749, 1319, 1857
ClaI	ATCGAT	2 cut(s)	276, 2670
CseI	GACGC	4 cut(s)	435, 512, 1355, 1671
CsiI	ACCWGGT	1 cut(s)	1005
CspAI	ACCGGT	2 cut(s)	131, 638
CspCI	CAANNNNNGTGG	2 cut(s)	1478, 1513
DdeI	CTNAG	7 cut(s)	212, 238, 1222, 1483, 1527, 2160, 2664
DraIII	CACNNNGTG	1 cut(s)	1730
DrdI	GACNNNNNNGTC	3 cut(s)	1528, 2077, 2164
DseDI	GACNNNNNNGTC	3 cut(s)	1528, 2077, 2164
EaeI	YGGCCR	4 cut(s)	190, 370, 1080, 2031
Eam1104I	CTCTTC	5 cut(s)	128, 446, 1437, 1902, 1991
EarI	CTCTTC	5 cut(s)	128, 446, 1437, 1902, 1991
EciI	GGCGGA	1 cut(s)	759
Ecl136II	GAGCTC	2 cut(s)	201, 868
Eco130I	CCWWGG	5 cut(s)	984, 1470, 1901, 2034, 2100
Eco24I	GRGCYC	2 cut(s)	203, 870
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	3 cut(s)	516, 1319, 1857
Eco47III	AGCGCT	3 cut(s)	959, 1227, 2295
Eco53kI	GAGCTC	2 cut(s)	201, 868
Eco88I	CYCGRG	2 cut(s)	566, 1300
EcoICRI	GAGCTC	2 cut(s)	201, 868
EcoO109I	RGGNCCY	3 cut(s)	516, 749, 1857
EcoRI	GAATTC	3 cut(s)	242, 354, 533
EcoRII	CCWGG	1 cut(s)	1005
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	5 cut(s)	984, 1470, 1901, 2034, 2100
EcoT22I	ATGCAT	1 cut(s)	2385
EcoT38I	GRGCYC	2 cut(s)	203, 870
ErhI	CCWWGG	5 cut(s)	984, 1470, 1901, 2034, 2100
Esp3I	CGTCTC	3 cut(s)	92, 1182, 1983
FaqI	GGGAC	4 cut(s)	293, 502, 806, 1870
FauI	CCCGC	4 cut(s)	518, 528, 1341, 1637
FbaI	TGATCA	1 cut(s)	1977
FblI	GTMKAC	3 cut(s)	159, 672, 1376
Fnu4HI	GCNGC	7 cut(s)	181, 456, 1350, 1389, 1602, 1935, 2262
FokI	GGATG	7 cut(s)	20, 98, 250, 368, 949, 1967, 2429
FriOI	GRGCYC	2 cut(s)	203, 870
Fsp4HI	GCNGC	7 cut(s)	181, 456, 1350, 1389, 1602, 1935, 2262
FspBI	CTAG	7 cut(s)	300, 1214, 1277, 2214, 2258, 2598, 2625
GlaI	GCGC	7 cut(s)	682, 959, 1227, 1933, 1938, 2295, 2430
GluI	GCNGC	7 cut(s)	181, 456, 1350, 1389, 1602, 1935, 2262
GsuI	CTGGAG	1 cut(s)	737
HaeII	RGCGCY	4 cut(s)	961, 1229, 2297, 2432
HaeIII	GGCC	7 cut(s)	192, 210, 372, 750, 1082, 1469, 2033
HgaI	GACGC	4 cut(s)	435, 512, 1355, 1671
HhaI	GCGC	7 cut(s)	683, 960, 1228, 1934, 1939, 2296, 2431
Hin6I	GCGC	7 cut(s)	681, 958, 1226, 1932, 1937, 2294, 2429
HinP1I	GCGC	7 cut(s)	681, 958, 1226, 1932, 1937, 2294, 2429
HincII	GTYRAC	5 cut(s)	160, 673, 1204, 2150, 2157
HindII	GTYRAC	5 cut(s)	160, 673, 1204, 2150, 2157
HpaI	GTTAAC	1 cut(s)	1204
Hpy99I	CGWCG	6 cut(s)	429, 506, 674, 743, 806, 2148
HpyAV	CCTTC	3 cut(s)	586, 1964, 2407
HpyCH4III	ACNGT	8 cut(s)	1547, 1679, 1808, 1820, 2144, 2154, 2406, 2656
HpyCH4IV	ACGT	8 cut(s)	738, 1158, 1175, 1538, 1629, 1656, 1779, 1992
HpyF3I	CTNAG	7 cut(s)	212, 238, 1222, 1483, 1527, 2160, 2664
HpySE526I	ACGT	8 cut(s)	738, 1158, 1175, 1538, 1629, 1656, 1779, 1992
HspAI	GCGC	7 cut(s)	681, 958, 1226, 1932, 1937, 2294, 2429
KflI	GGGWCCC	1 cut(s)	1857
KpnI	GGTACC	1 cut(s)	1671
KroI	GCCGGC	1 cut(s)	458
KroNI	GCCGGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	1977
KspAI	GTTAAC	1 cut(s)	1204
LguI	GCTCTTC	1 cut(s)	1991
LmnI	GCTCC	6 cut(s)	206, 341, 434, 1127, 1341, 2291
Lsp1109I	GCAGC	3 cut(s)	1361, 1400, 2248
LweI	GCATC	5 cut(s)	268, 272, 583, 1249, 2524
MabI	ACCWGGT	1 cut(s)	1005
MaeI	CTAG	7 cut(s)	300, 1214, 1277, 2214, 2258, 2598, 2625
MaeII	ACGT	8 cut(s)	738, 1158, 1175, 1538, 1629, 1656, 1779, 1992
MbiI	CCGCTC	2 cut(s)	1125, 1336
MflI	RGATCY	1 cut(s)	988
MhlI	GDGCHC	5 cut(s)	203, 870, 1735, 2003, 2069
MlsI	TGGCCA	2 cut(s)	1082, 2033
MluNI	TGGCCA	2 cut(s)	1082, 2033
MlyI	GAGTC	8 cut(s)	230, 558, 1008, 1058, 1292, 1727, 1874, 2555
MmeI	TCCRAC	4 cut(s)	51, 448, 1165, 1541
Mox20I	TGGCCA	2 cut(s)	1082, 2033
Mph1103I	ATGCAT	1 cut(s)	2385
MroNI	GCCGGC	1 cut(s)	458
MscI	TGGCCA	2 cut(s)	1082, 2033
MseI	TTAA	5 cut(s)	824, 1203, 2271, 2444, 2637
MslI	CAYNNNNRTG	3 cut(s)	776, 1023, 1962
Msp20I	TGGCCA	2 cut(s)	1082, 2033
MspA1I	CMGCKG	2 cut(s)	523, 2237
MspR9I	CCNGG	5 cut(s)	369, 1007, 1340, 1589, 2132
MteI	GCGCNGCGC	1 cut(s)	1935
MvaI	CCWGG	1 cut(s)	1007
MvnI	CGCG	5 cut(s)	286, 1118, 1866, 1934, 1939
NaeI	GCCGGC	1 cut(s)	460
NciI	CCSGG	4 cut(s)	369, 1340, 1589, 2132
NcoI	CCATGG	1 cut(s)	2100
NgoMIV	GCCGGC	1 cut(s)	458
NlaIV	GGNNCC	8 cut(s)	518, 751, 990, 1321, 1669, 1732, 1858, 1859
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	6 cut(s)	127, 448, 493, 1722, 1775, 1808
NsiI	ATGCAT	1 cut(s)	2385
NspI	RCATGY	2 cut(s)	1171, 2383
NspV	TTCGAA	2 cut(s)	1625, 2573
OliI	CACNNNNGTG	1 cut(s)	1962
PaeI	GCATGC	1 cut(s)	2383
PaeR7I	CTCGAG	2 cut(s)	566, 1300
PaqCI	CACCTGC	1 cut(s)	1391
PciSI	GCTCTTC	1 cut(s)	1991
PcsI	WCGNNNNNNNCGW	4 cut(s)	861, 1785, 2124, 2570
PdiI	GCCGGC	1 cut(s)	460
Pfl23II	CGTACG	1 cut(s)	597
PfoI	TCCNGGA	1 cut(s)	1587
PinAI	ACCGGT	2 cut(s)	131, 638
PkrI	GCNGC	7 cut(s)	182, 457, 1351, 1390, 1603, 1936, 2263
Ple19I	CGATCG	2 cut(s)	290, 699
PleI	GAGTC	8 cut(s)	230, 558, 1008, 1057, 1292, 1726, 1874, 2555
PpsI	GAGTC	8 cut(s)	230, 558, 1008, 1057, 1292, 1726, 1874, 2555
PpuMI	RGGWCCY	2 cut(s)	516, 1857
Psp124BI	GAGCTC	2 cut(s)	203, 870
Psp1406I	AACGTT	1 cut(s)	1629
Psp5II	RGGWCCY	2 cut(s)	516, 1857
Psp6I	CCWGG	1 cut(s)	1005
PspGI	CCWGG	1 cut(s)	1005
PspLI	CGTACG	1 cut(s)	597
PspN4I	GGNNCC	8 cut(s)	518, 751, 990, 1321, 1669, 1732, 1858, 1859
PspPI	GGNCC	4 cut(s)	516, 749, 1319, 1857
PspPPI	RGGWCCY	2 cut(s)	516, 1857
PspXI	VCTCGAGB	1 cut(s)	1300
PsuI	RGATCY	1 cut(s)	988
PvuI	CGATCG	2 cut(s)	290, 699
RseI	CAYNNNNRTG	3 cut(s)	776, 1023, 1962
SacI	GAGCTC	2 cut(s)	203, 870
SalI	GTCGAC	2 cut(s)	158, 671
SapI	GCTCTTC	1 cut(s)	1991
SaqAI	TTAA	5 cut(s)	824, 1203, 2271, 2444, 2637
SatI	GCNGC	7 cut(s)	181, 456, 1350, 1389, 1602, 1935, 2262
Sau96I	GGNCC	4 cut(s)	516, 749, 1319, 1857
ScaI	AGTACT	2 cut(s)	1218, 2138
SchI	GAGTC	8 cut(s)	230, 558, 1008, 1058, 1292, 1727, 1874, 2555
ScrFI	CCNGG	5 cut(s)	369, 1007, 1340, 1589, 2132
SduI	GDGCHC	5 cut(s)	203, 870, 1735, 2003, 2069
SexAI	ACCWGGT	1 cut(s)	1005
SfaNI	GCATC	5 cut(s)	268, 272, 583, 1249, 2524
SfcI	CTRYAG	1 cut(s)	1477
Sfr274I	CTCGAG	2 cut(s)	566, 1300
SfuI	TTCGAA	2 cut(s)	1625, 2573
SinI	GGWCC	3 cut(s)	516, 1319, 1857
SlaI	CTCGAG	2 cut(s)	566, 1300
SmiMI	CAYNNNNRTG	3 cut(s)	776, 1023, 1962
SmlI	CTYRAG	5 cut(s)	566, 1229, 1300, 1736, 2432
SmoI	CTYRAG	5 cut(s)	566, 1229, 1300, 1736, 2432
SpeI	ACTAGT	1 cut(s)	2597
SphI	GCATGC	1 cut(s)	2383
SspI	AATATT	1 cut(s)	1102
SspMI	CTAG	7 cut(s)	300, 1214, 1277, 2214, 2258, 2598, 2625
SstI	GAGCTC	2 cut(s)	203, 870
StyD4I	CCNGG	5 cut(s)	367, 1005, 1338, 1587, 2130
StyI	CCWWGG	5 cut(s)	984, 1470, 1901, 2034, 2100
TaaI	ACNGT	8 cut(s)	1547, 1679, 1808, 1820, 2144, 2154, 2406, 2656
TaiI	ACGT	8 cut(s)	741, 1161, 1178, 1541, 1632, 1659, 1782, 1995
TaqII	GACCGA	1 cut(s)	915
TatI	WGTACW	5 cut(s)	939, 1216, 1659, 2136, 2175
TauI	GCSGC	4 cut(s)	183, 458, 1604, 1937
Tru1I	TTAA	5 cut(s)	824, 1203, 2271, 2444, 2637
Tru9I	TTAA	5 cut(s)	824, 1203, 2271, 2444, 2637
TscAI	CASTG	3 cut(s)	1966, 2523, 2626
TseFI	GTSAC	6 cut(s)	127, 448, 493, 1722, 1775, 1808
TseI	GCWGC	3 cut(s)	1349, 1388, 2261
Tsp45I	GTSAC	6 cut(s)	127, 448, 493, 1722, 1775, 1808
TspGWI	ACGGA	7 cut(s)	436, 481, 627, 1763, 1763, 2219, 2304
TspRI	CASTG	3 cut(s)	1966, 2523, 2626
VpaK11BI	GGWCC	3 cut(s)	516, 1319, 1857
XapI	RAATTY	8 cut(s)	242, 354, 377, 533, 655, 807, 2317, 2614
XceI	RCATGY	2 cut(s)	1171, 2383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1899
XhoI	CTCGAG	2 cut(s)	566, 1300
XmiI	GTMKAC	3 cut(s)	159, 672, 1376
XspI	CTAG	7 cut(s)	300, 1214, 1277, 2214, 2258, 2598, 2625
ZrmI	AGTACT	2 cut(s)	1218, 2138
Zsp2I	ATGCAT	1 cut(s)	2385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.