Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016601.1

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

6312 .. 8846

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016601.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

atgaaaccagttcttggtcctctctacctttccttgtttctgcacatcgtcgcccaattcgtggctggtaattcgcaacatatctacactccggttgaagatatcaccattgcttgtggcaattccggcacccaaatcaataagtttgataaccgaacttggagcggagatatcaactcagaattttgcccctttgaacaagaccaagttggtaacaatacatcccaagtcagaaaagcaccatcatcgtccttcacaggcagagtgccgtacaccaccgccagggtttctcactcaacattcacctacagattttcgttaactacgggccagaagttcatacgcttgtatttctaccatgcatcatatgctgactttgaccgctccaaagccctgttttccgttgaagcaggtgattatacccttctccaagatttcaatgcttcagccactgtggatgctgctggggtggagacgatatacagagagttctgtttgaacatttatgatggagatcagattctgagcattacattcactccaagcaaagccaagcaggcatatgcctttatcaatggaatcgaaattgtgtccatgccgacctatctttactacactgcacctcacagcaatgcggctgattatataggcgggggagacagatttcctattcaggagaacactgctatggagatggtttaccgaatcaacatcggtggcagctcagtctcatccagtcaagacactggaatgtaccgcaattggaatggtgatgatgtgacctacttggatgaattaagtagaagtctaaccgtttcaccgtccaacccaagcattcaactcaagtttgccaaaatacctgaatacagtgcgccaaaagaagtttatcaaacaggccgttcaatcgactccaacaagacaaacaacaagagctacaatctcacctgggaatttcctgtagactctaaccatccccacctggttagactacatttctgtgagcttgagcccgaaattaccaagataggagagcggacttttctaatttacatagggaatcaagccgcggatacagcagacatagtcgaatggagtggtggaaatgggataccagtatacagagactacgtggtggtcttgtctaacccagtaaggcagaagaatgtaagtctttctatcacactgcaagcattccaaatggattggatgattaaatacaagaatgcaatgttgaatgggctcgaaatcctgaaattgatcgactcaaaaggccctcaagccggaagcagcaccaacccgaagctgacaccgctaagcccaagaacttcaaagagttcaagttctgcgcttgccatcgttgctggtgtagtttctagcacagtagtattttctgcccttggattcttgattttcaggcaaagatggaaagtcaaggactccggcttcagccacaggacaatgaagttaacaatgacccccagctcatcttcaccgtcatatttgtgtcgctacttttcactggcagagatcaaagccgccaccaagaacttcaaccatactttcattattggtgttggaggattcggcaatgtgtacaaaggatgcatcgatagtggagccactctcgttgcaattaaacgactgaaacctgagtcatcccagggtgcccatgagttcaagacagaaattgagttgctctcccaacttcgtcatcgccatttggtttcacttattggatactgtactgataaaggtgagatgatcttggtatatgattacatggcccgtggatccctccgtgatcatctctaccacaccaataactctactctttcttgggaacaacggcttcagatttgtattggcacggctcaagggctgcagtaccttcatggaggtgccaagggaaccatcattcaccgtgacgtgaagagcacaaacatcttattggatgagaaatgggtggccaaggtttcagattttgggttgtcaaaaatggggaaccccaacatgtccaagacccacataagcacggtagtgaagggcagtttcggatatctagacccagaatactaccgacgacaaagattaactgagaagtccgatgtgtactcatttggtgtggttttgtttgaggtactatgtgcaaagccagctgtgataaatacagaggagatgaggcaaatgaacttatctgagtgggccaaaagctgtcatcacaagggggaacttgatcgaatcatcgacccaagcttaacgggtaacattgaaaccgagagcttgaataaatttgttgatattgcaatcagctgtgtgcatgaaaatggtgttgagaggccgtcaatggatgatgttcttagggggcttgagcttgcgttgcagattcatcatagccaagagagtgatatcaactccattgaaaggaaggtagaaactgaaacaagtagtggagaaccaagttgtgcgaccaaagattccattacatgtatatctgggacaatcttctctgagatcaaccatccaagtgggagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

844

Amino Acids

94.02

Weight (kDa)

6.67

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	401
AccB1I	GGYRCC	3 cut(s)	128, 1664, 1898
AccB7I	CCANNNNNTGG	2 cut(s)	14, 61
AccBSI	CCGCTC	3 cut(s)	165, 384, 1033
AccI	GTMKAC	2 cut(s)	960, 1116
AccII	CGCG	1 cut(s)	1067
AclWI	GGATC	2 cut(s)	1785, 1798
AcoI	YGGCCR	1 cut(s)	1965
AcsI	RAATTY	3 cut(s)	182, 950, 2288
AcuI	CTGAAG	3 cut(s)	429, 1429, 1835
AfaI	GTAC	7 cut(s)	272, 755, 1595, 1744, 1886, 2111, 2139
AfiI	CCNNNNNNNGG	5 cut(s)	14, 61, 282, 1280, 2421
AflIII	ACRYGT	2 cut(s)	2010, 2483
AjiI	CACGTC	1 cut(s)	1927
AjnI	CCWGG	4 cut(s)	281, 944, 978, 1659
AleI	CACNNNNGTG	1 cut(s)	2036
Alw21I	GWGCWC	1 cut(s)	1937
Alw26I	GTCTC	4 cut(s)	467, 651, 733, 1116
AlwI	GGATC	2 cut(s)	1785, 1798
AlwNI	CAGNNNCTG	2 cut(s)	452, 523
AoxI	GGCC	7 cut(s)	328, 895, 1270, 1782, 1965, 2202, 2336
ApeKI	GCWGC	4 cut(s)	461, 720, 1287, 1879
ApoI	RAATTY	3 cut(s)	182, 950, 2288
AspLEI	GCGC	2 cut(s)	874, 1348
AspS9I	GGNCC	5 cut(s)	17, 328, 1271, 1783, 2202
AsuHPI	GGTGA	9 cut(s)	97, 295, 425, 782, 810, 934, 1482, 1766, 1910
AvaII	GGWCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	1669
BalI	TGGCCA	1 cut(s)	1967
BamHI	GGATCC	1 cut(s)	1790
BanI	GGYRCC	3 cut(s)	128, 1664, 1898
BanII	GRGCYC	2 cut(s)	1011, 1242
Bbv12I	GWGCWC	1 cut(s)	1937
BbvI	GCAGC	4 cut(s)	448, 732, 1299, 1866
BccI	CCATC	8 cut(s)	250, 503, 688, 978, 1361, 1416, 1919, 2526
BceAI	ACGGC	5 cut(s)	253, 882, 1862, 1884, 2323
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciT130I	CCWGG	4 cut(s)	283, 946, 980, 1661
BciVI	GTATCC	3 cut(s)	1063, 1101, 1730
BclI	TGATCA	1 cut(s)	1801
BcoDI	GTCTC	4 cut(s)	467, 651, 733, 1116
BfaI	CTAG	2 cut(s)	1374, 2060
BfmI	CTRYAG	3 cut(s)	307, 957, 1880
BfuAI	ACCTGC	1 cut(s)	401
BfuI	GTATCC	3 cut(s)	1063, 1101, 1730
BglI	GCCNNNNNGGC	1 cut(s)	557
BisI	GCNGC	7 cut(s)	462, 636, 721, 1065, 1288, 1536, 1880
BlpI	GCTNAGC	1 cut(s)	1313
BlsI	GCNGC	7 cut(s)	463, 637, 722, 1066, 1289, 1537, 1881
Bme1390I	CCNGG	4 cut(s)	283, 946, 980, 1661
Bme18I	GGWCC	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	1927
BmgT120I	GGNCC	5 cut(s)	17, 328, 1271, 1783, 2202
BmiI	GGNNCC	7 cut(s)	130, 1618, 1666, 1792, 1900, 1909, 2003
BmrFI	CCNGG	4 cut(s)	283, 946, 980, 1661
BmrI	ACTGGG	1 cut(s)	1142
BmsI	GCATC	4 cut(s)	371, 448, 1592, 1614
BmuI	ACTGGG	1 cut(s)	1142
BplI	GAGNNNNNCTC	4 cut(s)	1608, 1640, 1682, 1714
Bpu1102I	GCTNAGC	1 cut(s)	1313
BpuEI	CTTGAG	5 cut(s)	827, 1025, 1260, 1857, 2387
Bsa29I	ATCGAT	1 cut(s)	1608
BsaAI	YACGTR	1 cut(s)	1129
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	9 cut(s)	282, 945, 1065, 1396, 1659, 1660, 1786, 1902, 1968
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 61, 282, 1280, 2421
Bse1I	ACTGG	6 cut(s)	8, 735, 751, 1112, 1148, 1524
Bse3DI	GCAATG	4 cut(s)	108, 637, 1233, 1594
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	4 cut(s)	283, 946, 980, 1661
BseCI	ATCGAT	1 cut(s)	1608
BseDI	CCNNGG	9 cut(s)	282, 945, 1065, 1396, 1659, 1660, 1786, 1902, 1968
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	5 cut(s)	14, 61, 282, 1280, 2421
BseMI	GCAATG	4 cut(s)	108, 637, 1233, 1594
BseMII	CTCAG	7 cut(s)	192, 515, 738, 1641, 2085, 2187, 2499
BseNI	ACTGG	6 cut(s)	8, 735, 751, 1112, 1148, 1524
BseRI	GAGGAG	1 cut(s)	2186
BseSI	GKGCMC	1 cut(s)	1669
BseXI	GCAGC	4 cut(s)	448, 732, 1299, 1866
BseYI	CCCAGC	2 cut(s)	464, 1478
BsgI	GTGCAG	2 cut(s)	26, 603
Bsh1236I	CGCG	1 cut(s)	1067
BshFI	GGCC	7 cut(s)	330, 897, 1272, 1784, 1967, 2204, 2338
BshNI	GGYRCC	3 cut(s)	128, 1664, 1898
BshVI	ATCGAT	1 cut(s)	1608
BsiHKAI	GWGCWC	1 cut(s)	1937
BsiSI	CCGG	4 cut(s)	92, 126, 1281, 1440
BslFI	GGGAC	1 cut(s)	2509
BslI	CCNNNNNNNGG	5 cut(s)	14, 61, 282, 1280, 2421
BsmAI	GTCTC	4 cut(s)	467, 651, 733, 1116
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	2509
BsmI	GAATGC	3 cut(s)	834, 1190, 1228
BsnI	GGCC	7 cut(s)	330, 897, 1272, 1784, 1967, 2204, 2338
Bsp1286I	GDGCHC	4 cut(s)	1011, 1242, 1669, 1937
Bsp1407I	TGTACA	1 cut(s)	1593
Bsp143I	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
Bsp1720I	GCTNAGC	1 cut(s)	1313
BspANI	GGCC	7 cut(s)	330, 897, 1272, 1784, 1967, 2204, 2338
BspCNI	CTCAG	7 cut(s)	191, 516, 737, 1642, 2086, 2188, 2500
BspDI	ATCGAT	1 cut(s)	1608
BspFNI	CGCG	1 cut(s)	1067
BspLI	GGNNCC	7 cut(s)	130, 1618, 1666, 1792, 1900, 1909, 2003
BspMAI	CTGCAG	1 cut(s)	1884
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	1785, 1798
BspQI	GCTCTTC	1 cut(s)	1925
BspT107I	GGYRCC	3 cut(s)	128, 1664, 1898
BsrBI	CCGCTC	3 cut(s)	165, 384, 1033
BsrDI	GCAATG	4 cut(s)	108, 637, 1233, 1594
BsrGI	TGTACA	1 cut(s)	1593
BsrI	ACTGG	6 cut(s)	8, 735, 751, 1112, 1148, 1524
BssECI	CCNNGG	9 cut(s)	282, 945, 1065, 1396, 1659, 1660, 1786, 1902, 1968
BssMI	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
BssNAI	GTATAC	1 cut(s)	1117
BssT1I	CCWWGG	3 cut(s)	1396, 1902, 1968
Bst1107I	GTATAC	1 cut(s)	1117
Bst2UI	CCWGG	4 cut(s)	283, 946, 980, 1661
Bst4CI	ACNGT	9 cut(s)	454, 814, 822, 869, 1381, 1494, 1742, 1922, 2035
Bst6I	CTCTTC	1 cut(s)	1925
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	1593
BstBAI	YACGTR	1 cut(s)	1129
BstC8I	GCNNGC	5 cut(s)	558, 1188, 1350, 2154, 2373
BstDEI	CTNAG	9 cut(s)	178, 524, 724, 1313, 1650, 2094, 2196, 2357, 2508
BstDSI	CCRYGG	2 cut(s)	1065, 1786
BstFNI	CGCG	1 cut(s)	1067
BstHHI	GCGC	2 cut(s)	874, 1348
BstKTI	GATC	8 cut(s)	517, 1260, 1530, 1764, 1793, 1804, 2236, 2514
BstMAI	GTCTC	4 cut(s)	467, 651, 733, 1116
BstMBI	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 368, 557, 1073, 1309, 1358, 2153, 2377
BstNI	CCWGG	4 cut(s)	283, 946, 980, 1661
BstNSI	RCATGY	2 cut(s)	2014, 2487
BstSCI	CCNGG	4 cut(s)	281, 944, 978, 1659
BstSFI	CTRYAG	3 cut(s)	307, 957, 1880
BstSLI	GKGCMC	1 cut(s)	1669
BstUI	CGCG	1 cut(s)	1067
BstV1I	GCAGC	4 cut(s)	448, 732, 1299, 1866
BstX2I	RGATCY	1 cut(s)	1790
BstXI	CCANNNNNNTGG	1 cut(s)	2525
BstYI	RGATCY	1 cut(s)	1790
BstZ17I	GTATAC	1 cut(s)	1117
Bsu15I	ATCGAT	1 cut(s)	1608
BsuI	GTATCC	3 cut(s)	1063, 1101, 1730
BsuRI	GGCC	7 cut(s)	330, 897, 1272, 1784, 1967, 2204, 2338
BsuTUI	ATCGAT	1 cut(s)	1608
BtgI	CCRYGG	2 cut(s)	1065, 1786
BtgZI	GCGATG	1 cut(s)	1697
BtrI	CACGTC	1 cut(s)	1927
BtsI	GCAGTG	3 cut(s)	615, 681, 1181
BtsIMutI	CAGTG	7 cut(s)	450, 615, 681, 744, 874, 1181, 1517
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	5 cut(s)	558, 1188, 1350, 2154, 2373
CaiI	CAGNNNCTG	2 cut(s)	452, 523
CfoI	GCGC	2 cut(s)	874, 1348
Cfr13I	GGNCC	5 cut(s)	17, 328, 1271, 1783, 2202
Cfr42I	CCGCGG	1 cut(s)	1068
ClaI	ATCGAT	1 cut(s)	1608
CsiI	ACCWGGT	1 cut(s)	978
Csp6I	GTAC	7 cut(s)	271, 754, 1594, 1743, 1885, 2110, 2138
CspCI	CAANNNNNGTGG	4 cut(s)	697, 732, 1609, 1644
CviAII	CATG	8 cut(s)	359, 595, 1670, 1780, 1892, 2011, 2318, 2484
CviQI	GTAC	7 cut(s)	271, 754, 1594, 1743, 1885, 2110, 2138
DdeI	CTNAG	9 cut(s)	178, 524, 724, 1313, 1650, 2094, 2196, 2357, 2508
DpnI	GATC	8 cut(s)	516, 1259, 1529, 1763, 1792, 1803, 2235, 2513
DpnII	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
EaeI	YGGCCR	1 cut(s)	1965
Eam1104I	CTCTTC	1 cut(s)	1925
EarI	CTCTTC	1 cut(s)	1925
Eco130I	CCWWGG	3 cut(s)	1396, 1902, 1968
Eco24I	GRGCYC	2 cut(s)	1011, 1242
Eco32I	GATATC	4 cut(s)	103, 172, 2057, 2407
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	3 cut(s)	429, 1429, 1835
EcoO109I	RGGNCCY	1 cut(s)	1271
EcoRII	CCWGG	4 cut(s)	281, 944, 978, 1659
EcoRV	GATATC	4 cut(s)	103, 172, 2057, 2407
EcoT14I	CCWWGG	3 cut(s)	1396, 1902, 1968
EcoT22I	ATGCAT	2 cut(s)	364, 1607
EcoT38I	GRGCYC	2 cut(s)	1011, 1242
ErhI	CCWWGG	3 cut(s)	1396, 1902, 1968
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	8 cut(s)	362, 598, 1673, 1783, 1895, 2014, 2321, 2487
FaqI	GGGAC	1 cut(s)	2509
FatI	CATG	8 cut(s)	358, 594, 1669, 1779, 1891, 2010, 2317, 2483
FauI	CCCGC	1 cut(s)	644
FauNDI	CATATG	2 cut(s)	367, 562
FbaI	TGATCA	1 cut(s)	1801
FblI	GTMKAC	2 cut(s)	960, 1116
Fnu4HI	GCNGC	7 cut(s)	462, 636, 721, 1065, 1288, 1536, 1880
FriOI	GRGCYC	2 cut(s)	1011, 1242
Fsp4HI	GCNGC	7 cut(s)	462, 636, 721, 1065, 1288, 1536, 1880
FspBI	CTAG	2 cut(s)	1374, 2060
GlaI	GCGC	2 cut(s)	873, 1347
GluI	GCNGC	7 cut(s)	462, 636, 721, 1065, 1288, 1536, 1880
GsaI	CCCAGC	2 cut(s)	468, 1482
HaeIII	GGCC	7 cut(s)	330, 897, 1272, 1784, 1967, 2204, 2338
HapII	CCGG	4 cut(s)	92, 126, 1281, 1440
HhaI	GCGC	2 cut(s)	874, 1348
Hin1II	CATG	8 cut(s)	362, 598, 1673, 1783, 1895, 2014, 2321, 2487
Hin6I	GCGC	2 cut(s)	872, 1346
HinP1I	GCGC	2 cut(s)	872, 1346
HincII	GTYRAC	2 cut(s)	321, 1467
HindII	GTYRAC	2 cut(s)	321, 1467
HindIII	AAGCTT	1 cut(s)	2251
HpaI	GTTAAC	2 cut(s)	321, 1467
HpaII	CCGG	4 cut(s)	92, 126, 1281, 1440
HphI	GGTGA	9 cut(s)	97, 295, 425, 782, 810, 934, 1482, 1766, 1910
Hpy166II	GTNNAC	8 cut(s)	273, 321, 700, 961, 1117, 1467, 1594, 2110
Hpy188III	TCNNGA	6 cut(s)	674, 740, 1249, 1405, 1678, 2060
Hpy8I	GTNNAC	8 cut(s)	273, 321, 700, 961, 1117, 1467, 1594, 2110
Hpy99I	CGWCG	2 cut(s)	53, 2082
HpyAV	CCTTC	5 cut(s)	262, 434, 1898, 2035, 2419
HpyCH4III	ACNGT	9 cut(s)	454, 814, 822, 869, 1381, 1494, 1742, 1922, 2035
HpyCH4IV	ACGT	2 cut(s)	1128, 1926
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 368, 557, 1073, 1309, 1358, 2153, 2377
HpyF3I	CTNAG	9 cut(s)	178, 524, 724, 1313, 1650, 2094, 2196, 2357, 2508
HpySE526I	ACGT	2 cut(s)	1128, 1926
Hsp92II	CATG	8 cut(s)	362, 598, 1673, 1783, 1895, 2014, 2321, 2487
HspAI	GCGC	2 cut(s)	872, 1346
Ksp22I	TGATCA	1 cut(s)	1801
KspAI	GTTAAC	2 cut(s)	321, 1467
KspI	CCGCGG	1 cut(s)	1068
Kzo9I	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
LguI	GCTCTTC	1 cut(s)	1925
LmnI	GCTCC	3 cut(s)	162, 389, 1616
Lsp1109I	GCAGC	4 cut(s)	448, 732, 1299, 1866
LweI	GCATC	4 cut(s)	371, 448, 1592, 1614
MabI	ACCWGGT	1 cut(s)	978
MaeI	CTAG	2 cut(s)	1374, 2060
MaeII	ACGT	2 cut(s)	1128, 1926
MaeIII	GTNAC	4 cut(s)	212, 778, 1922, 2261
MalI	GATC	8 cut(s)	516, 1259, 1529, 1763, 1792, 1803, 2235, 2513
MbiI	CCGCTC	3 cut(s)	165, 384, 1033
MboI	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
MboII	GAAGA	5 cut(s)	110, 1171, 1479, 1942, 2494
MfeI	CAATTG	1 cut(s)	760
MflI	RGATCY	1 cut(s)	1790
MhlI	GDGCHC	4 cut(s)	1011, 1242, 1669, 1937
MlsI	TGGCCA	1 cut(s)	1967
MluNI	TGGCCA	1 cut(s)	1967
MlyI	GAGTC	5 cut(s)	902, 956, 1256, 1430, 1661
MmeI	TCCRAC	3 cut(s)	849, 936, 1555
Mox20I	TGGCCA	1 cut(s)	1967
Mph1103I	ATGCAT	2 cut(s)	364, 1607
MscI	TGGCCA	1 cut(s)	1967
MseI	TTAA	7 cut(s)	320, 797, 1212, 1466, 1635, 2090, 2255
MslI	CAYNNNNRTG	9 cut(s)	630, 686, 749, 996, 1501, 1896, 2036, 2322, 2523
Msp20I	TGGCCA	1 cut(s)	1967
MspA1I	CMGCKG	3 cut(s)	1067, 2156, 2310
MspI	CCGG	4 cut(s)	92, 126, 1281, 1440
MspR9I	CCNGG	4 cut(s)	283, 946, 980, 1661
MunI	CAATTG	1 cut(s)	760
Mva1269I	GAATGC	3 cut(s)	834, 1190, 1228
MvaI	CCWGG	4 cut(s)	283, 946, 980, 1661
MvnI	CGCG	1 cut(s)	1067
MwoI	GCNNNNNNNGC	8 cut(s)	126, 368, 557, 1073, 1309, 1358, 2153, 2377
NdeI	CATATG	2 cut(s)	367, 562
NdeII	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
NlaIII	CATG	8 cut(s)	362, 598, 1673, 1783, 1895, 2014, 2321, 2487
NlaIV	GGNNCC	7 cut(s)	130, 1618, 1666, 1792, 1900, 1909, 2003
NmuCI	GTSAC	2 cut(s)	778, 1922
NsiI	ATGCAT	2 cut(s)	364, 1607
NspI	RCATGY	2 cut(s)	2014, 2487
OliI	CACNNNNGTG	1 cut(s)	2036
PaqCI	CACCTGC	1 cut(s)	401
PasI	CCCWGGG	1 cut(s)	1660
PciI	ACATGT	2 cut(s)	2010, 2483
PciSI	GCTCTTC	1 cut(s)	1925
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	3 cut(s)	834, 1190, 1228
PfeI	GAWTC	9 cut(s)	520, 579, 705, 1057, 1401, 1581, 2238, 2383, 2474
PflFI	GACNNNGTC	1 cut(s)	1082
PflMI	CCANNNNNTGG	2 cut(s)	14, 61
PkrI	GCNGC	7 cut(s)	463, 637, 722, 1066, 1289, 1537, 1881
PleI	GAGTC	5 cut(s)	902, 956, 1256, 1430, 1660
PpsI	GAGTC	5 cut(s)	902, 956, 1256, 1430, 1660
Ppu21I	YACGTR	1 cut(s)	1129
PscI	ACATGT	2 cut(s)	2010, 2483
Psp6I	CCWGG	4 cut(s)	281, 944, 978, 1659
PspFI	CCCAGC	2 cut(s)	464, 1478
PspGI	CCWGG	4 cut(s)	281, 944, 978, 1659
PspN4I	GGNNCC	7 cut(s)	130, 1618, 1666, 1792, 1900, 1909, 2003
PspPI	GGNCC	5 cut(s)	17, 328, 1271, 1783, 2202
PstI	CTGCAG	1 cut(s)	1884
PstNI	CAGNNNCTG	2 cut(s)	452, 523
PsuI	RGATCY	1 cut(s)	1790
PsyI	GACNNNGTC	1 cut(s)	1082
PvuII	CAGCTG	2 cut(s)	2156, 2310
RsaI	GTAC	7 cut(s)	272, 755, 1595, 1744, 1886, 2111, 2139
RsaNI	GTAC	7 cut(s)	271, 754, 1594, 1743, 1885, 2110, 2138
RseI	CAYNNNNRTG	9 cut(s)	630, 686, 749, 996, 1501, 1896, 2036, 2322, 2523
SacII	CCGCGG	1 cut(s)	1068
SapI	GCTCTTC	1 cut(s)	1925
SaqAI	TTAA	7 cut(s)	320, 797, 1212, 1466, 1635, 2090, 2255
SatI	GCNGC	7 cut(s)	462, 636, 721, 1065, 1288, 1536, 1880
Sau3AI	GATC	8 cut(s)	514, 1257, 1527, 1761, 1790, 1801, 2233, 2511
Sau96I	GGNCC	5 cut(s)	17, 328, 1271, 1783, 2202
SchI	GAGTC	5 cut(s)	902, 956, 1256, 1430, 1661
ScrFI	CCNGG	4 cut(s)	283, 946, 980, 1661
SduI	GDGCHC	4 cut(s)	1011, 1242, 1669, 1937
SexAI	ACCWGGT	1 cut(s)	978
SfaNI	GCATC	4 cut(s)	371, 448, 1592, 1614
SfcI	CTRYAG	3 cut(s)	307, 957, 1880
Sfr303I	CCGCGG	1 cut(s)	1068
SgrBI	CCGCGG	1 cut(s)	1068
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	9 cut(s)	630, 686, 749, 996, 1501, 1896, 2036, 2322, 2523
SmlI	CTYRAG	5 cut(s)	842, 1004, 1275, 1872, 2366
SmoI	CTYRAG	5 cut(s)	842, 1004, 1275, 1872, 2366
SspMI	CTAG	2 cut(s)	1374, 2060
StyD4I	CCNGG	4 cut(s)	281, 944, 978, 1659
StyI	CCWWGG	3 cut(s)	1396, 1902, 1968
TaaI	ACNGT	9 cut(s)	454, 814, 822, 869, 1381, 1494, 1742, 1922, 2035
TaiI	ACGT	2 cut(s)	1131, 1929
TaqI	TCGA	8 cut(s)	582, 906, 1086, 1242, 1260, 1608, 2236, 2244
TatI	WGTACW	3 cut(s)	1593, 1742, 2109
TauI	GCSGC	3 cut(s)	638, 1067, 1538
TfiI	GAWTC	9 cut(s)	520, 579, 705, 1057, 1401, 1581, 2238, 2383, 2474
Tru1I	TTAA	7 cut(s)	320, 797, 1212, 1466, 1635, 2090, 2255
Tru9I	TTAA	7 cut(s)	320, 797, 1212, 1466, 1635, 2090, 2255
TscAI	CASTG	7 cut(s)	457, 622, 688, 751, 874, 1188, 1524
TseFI	GTSAC	2 cut(s)	778, 1922
TseI	GCWGC	4 cut(s)	461, 720, 1287, 1879
Tsp45I	GTSAC	2 cut(s)	778, 1922
TspDTI	ATGAA	9 cut(s)	17, 328, 807, 1475, 1552, 1880, 2201, 2334, 2375
TspGWI	ACGGA	2 cut(s)	391, 1787
TspRI	CASTG	7 cut(s)	457, 622, 688, 751, 874, 1188, 1524
Tth111I	GACNNNGTC	1 cut(s)	1082
Van91I	CCANNNNNTGG	2 cut(s)	14, 61
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	3 cut(s)	182, 950, 2288
XbaI	TCTAGA	1 cut(s)	2059
XceI	RCATGY	2 cut(s)	2014, 2487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmiI	GTMKAC	2 cut(s)	960, 1116
XspI	CTAG	2 cut(s)	1374, 2060
Zsp2I	ATGCAT	2 cut(s)	364, 1607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.