Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Reverse (-)

8011331 .. 8014402

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGAACCGATTCTCATTTCTCTCTACCTCTCCTTGTTTCTCCACATCCTCACTCTCCTAGAGGCCGGTCAGTCGCCACCTATATACACTCCGCCGGATGATATCACCCTCGACTGTGGCAATTTAGGGCAACACTCGAATAGCTATGACCCCAGGATTTGGAGTGGAGACATCAACTCAACATTTTCCCCCAAACAAGATGGTGACAGTAACGCCACATCCCAATTCAGAAAAGCACCTCCGTCGTTATCACAATCCGCCAGCCAAGTCCCTTACACCACTGCCCGCCTTTCTTACTCGGAATTCACTTACAGAATTCCTCTTTCTCCCGGGAAAAAGTTCATCCGCTTGCATTTCAACCCGGCTTCATACCCAGACTTCCACATCTCCAACTCCCTCTTCTCTGTCACAGCTAGCCACTCCATCCGCAGCTACATCCTCCTCAAAGACTTCAGAGCTTACATCACTGCCGACGATGCTTACAGGGAGATGCCGTTCATGAGAGAATTCTGCGTCAACATAGAGACACAACACAGTTTGAACATCACATTCAGTCCCAGCAAAGATGCATACGCTTTCATCAATGGGATTGAAATCGTGTCTATGCCCATCAAAATTTACACCACTTCAGTTCTTTCCATCGGCAGTGATAGCCCTTATTCATTCGAAAGCAGAATAGCTCTGGACATGGTGTACCGAATCAACATAGGCGGAAAGCCAATCAACACTACTGAAGACACCGGAATGTACCGGAAATGGGACGCTGCCGACGACGTGTATTTGGATGGCTTTAGTAAAAAATACAGCGTGCTAGCACAGAACAATACAGTTGAACTCAATTTTGTCGAAACTCCAGAGTACGCTGCTCCAAAGAAGTTTACAATACAGAGCGGAGAGAGGACATTTGTAATTTACTTAGCCAATCAAACTGCTGAACAAGGAGCAGACGTAATTCTATGGAGTGGTGGAAATGGGATACCAACACTCAGAGACTACACCTTGCTCATGCTTGGCCCTGGAAGCCAGAAAAAAGTTAATCTCTCTATTGCATTGCAAGCATCACGAGTAGATGGGTTGACCGAATACAAGGATGCAATGTTGAATGGACTCGAAATCTTCAAGCTAATTTACCCAAAAGGTTATCTCAAAACCAACCCAGACCCAACAATGACACCACATAGTAAATCGTTTCCCGTGCTTGCCCTCGTTGCTGGTGTAGTTTCCAGCATACTTGTGTTCTCTGTCCTAGGATGCTTGGCTTTCAGGAAAAGATGGAAAGTCAAGGACCCTGACTACAGGATAAGGAAGCTCACGACGACCCCCGGGTCATCATATCCGTGTCGCTACTTTTCACTGGCAGAGATCAAAGCCGCCACCAAAAACTTCAGTGATGCTTTTATCATTGGAGGTGGAGGTTTTGTGTATGATTACATGGCACAAGGGACCCTCCGTGACCATCTCTACCACACTAATACTCCACCTCTTCTTTGGGAACAACGGCTTCAGATTTGTATTGGTGCAGCTAGAGGATTGCAGTACCTCCATAGTGGTGTGAAGGGCACCATCATTCACCGAGATGTGAAGAGCACAAACATCTTATTGGATGACAACTGGGTGGCCAAGGTTTCAGATTTCGGGCTGTCCAAAGGCACAACTAACACGGCCAAAACCCACATCAGCACGATTGTGAAAGGCAGTTTCGGGTATCTGGATCCAGAATACTACCGACGACAACGTCTGACTGAGAAGTCAGACGTCTACTCATTTGGTGTAGTTCTGTGCGAGGTATTATGTGCAAGGCCAGCAGTGATACATACAGAAGAGCTGAGGCAAGCCAGCCTGGCTGAGTGGGCCAAGAGCTGTCATCAGAACGGAGAACTTGATCAAATCATTGATCCAAGTTTGAGAGGTAAGATTGCAGCCGAGTGCTTGAATATATTCTCTGATGTAGCTATCAGTTGCATGCATGATGATGGGACCAAACGGCCATCCATGAATGATGTTGTAAGAGGGCTTGAGCTTGCTATGGACCTTCAACCGAGCGCAGAGGGGAACATCAACTGCACTGAAAGGACTGGTAAAACTGAAACAAACAGTATGACAAAATTCTCATTTCAGGGCAATATTGCACATGTCATCAGCACTGTTCAAGCCAACAGGCCCGCTGAAGATGTTGCCCAGGCAGCTCAAGGCTTGGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

734

Amino Acids

81.59

Weight (kDa)

6.97

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	38 - 262	6e-10	Malectin-like domain
PK_Tyr_Ser-Thr	PF07714	473 - 671	4.2e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	473 - 669	1.7e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	1324, 1734, 1747
AatII	GACGTC	1 cut(s)	1758
AccB1I	GGYRCC	1 cut(s)	1559
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	1758
AciI	CCGC	9 cut(s)	92, 258, 286, 346, 427, 711, 891, 1371, 2163
AclWI	GGATC	3 cut(s)	1706, 1719, 1889
AcoI	YGGCCR	3 cut(s)	1617, 1662, 1985
AcsI	RAATTY	5 cut(s)	302, 315, 506, 615, 2105
AcuI	CTGAAG	6 cut(s)	436, 612, 753, 1369, 1487, 2187
AcyI	GRCGYC	1 cut(s)	1755
AfaI	GTAC	4 cut(s)	695, 749, 860, 1538
AfiI	CCNNNNNNNGG	2 cut(s)	159, 757
AflIII	ACRYGT	2 cut(s)	774, 2131
AgsI	TTSAA	9 cut(s)	358, 541, 593, 833, 1102, 1120, 1933, 2036, 2150
AjiI	CACGTC	1 cut(s)	775
AjnI	CCWGG	4 cut(s)	152, 1015, 1839, 2178
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AleI	CACNNNNGTG	1 cut(s)	1685
AloI	GAACNNNNNNTCC	2 cut(s)	479, 511
Alw21I	GWGCWC	1 cut(s)	1589
Alw26I	GTCTC	3 cut(s)	162, 518, 984
AlwI	GGATC	3 cut(s)	1706, 1719, 1889
Ama87I	CYCGRG	2 cut(s)	329, 1322
AoxI	GGCC	8 cut(s)	63, 1012, 1617, 1662, 1799, 1851, 1985, 2159
ApeKI	GCWGC	6 cut(s)	429, 764, 863, 1520, 1919, 2183
ApoI	RAATTY	5 cut(s)	302, 315, 506, 615, 2105
Asp700I	GAANNNNTTC	3 cut(s)	9, 338, 1937
AspA2I	CCTAGG	1 cut(s)	1246
AspLEI	GCGC	1 cut(s)	2045
AspS9I	GGNCC	7 cut(s)	1013, 1285, 1443, 1851, 1977, 2029, 2160
AsuC2I	CCSGG	5 cut(s)	330, 331, 362, 1323, 1324
AsuHPI	GGTGA	3 cut(s)	97, 215, 1562
AsuII	TTCGAA	1 cut(s)	666
AsuNHI	GCTAGC	2 cut(s)	413, 811
AvaI	CYCGRG	2 cut(s)	329, 1322
AvaII	GGWCC	4 cut(s)	1285, 1443, 1977, 2029
AvrII	CCTAGG	1 cut(s)	1246
BaeGI	GKGCMC	1 cut(s)	1562
BalI	TGGCCA	1 cut(s)	1619
BamHI	GGATCC	1 cut(s)	1711
BanI	GGYRCC	1 cut(s)	1559
BauI	CACGAG	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	1 cut(s)	1589
BbvCI	CCTCAGC	1 cut(s)	1826
BbvI	GCAGC	6 cut(s)	441, 751, 850, 1532, 1931, 2195
BceAI	ACGGC	4 cut(s)	478, 1514, 1677, 2000
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	4 cut(s)	154, 1017, 1841, 2180
BciVI	GTATCC	1 cut(s)	969
BclI	TGATCA	1 cut(s)	1882
BcnI	CCSGG	5 cut(s)	330, 331, 362, 1323, 1324
BcoDI	GTCTC	3 cut(s)	162, 518, 984
BfaI	CTAG	5 cut(s)	59, 414, 812, 1247, 1524
BfmI	CTRYAG	1 cut(s)	1294
BfuI	GTATCC	1 cut(s)	969
BglI	GCCNNNNNGGC	1 cut(s)	1841
BisI	GCNGC	7 cut(s)	430, 765, 864, 1371, 1521, 1920, 2184
BlnI	CCTAGG	1 cut(s)	1246
BlsI	GCNGC	7 cut(s)	431, 766, 865, 1372, 1522, 1921, 2185
Bme1390I	CCNGG	9 cut(s)	154, 330, 331, 362, 1017, 1323, 1324, 1841, 2180
Bme18I	GGWCC	4 cut(s)	1285, 1443, 1977, 2029
BmeT110I	CYCGRG	2 cut(s)	329, 1322
BmgBI	CACGTC	1 cut(s)	775
BmgT120I	GGNCC	7 cut(s)	1013, 1285, 1443, 1851, 1977, 2029, 2160
BmiI	GGNNCC	7 cut(s)	6, 1287, 1444, 1445, 1561, 1713, 1978
BmrFI	CCNGG	9 cut(s)	154, 330, 331, 362, 1017, 1323, 1324, 1841, 2180
BmrI	ACTGGG	1 cut(s)	1621
BmsI	GCATC	7 cut(s)	466, 480, 556, 1067, 1081, 1241, 1381
BmtI	GCTAGC	2 cut(s)	417, 815
BmuI	ACTGGG	1 cut(s)	1621
BpiI	GAAGAC	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	1826
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	2036, 2172
BpuMI	CCSGG	5 cut(s)	330, 331, 362, 1323, 1324
BsaBI	GATNNNNATC	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	1755
BsaJI	CCNNGG	8 cut(s)	152, 329, 1015, 1246, 1321, 1322, 1620, 2178
BsaWI	WCCGGW	2 cut(s)	740, 750
BsaXI	ACNNNNNCTCC	8 cut(s)	479, 509, 933, 963, 1404, 1434, 1459, 1489
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 757
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	3 cut(s)	1359, 1616, 2080
Bse3DI	GCAATG	2 cut(s)	1049, 1101
Bse8I	GATNNNNATC	1 cut(s)	593
BseBI	CCWGG	4 cut(s)	154, 1017, 1841, 2180
BseDI	CCNNGG	8 cut(s)	152, 329, 1015, 1246, 1321, 1322, 1620, 2178
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	2 cut(s)	159, 757
BseMI	GCAATG	2 cut(s)	1049, 1101
BseMII	CTCAG	4 cut(s)	1000, 1734, 1817, 1836
BseNI	ACTGG	3 cut(s)	1359, 1616, 2080
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	1562
BseXI	GCAGC	6 cut(s)	441, 751, 850, 1532, 1931, 2195
BseYI	CCCAGC	1 cut(s)	557
BsgI	GTGCAG	2 cut(s)	1539, 2047
BshFI	GGCC	8 cut(s)	65, 1014, 1619, 1664, 1801, 1853, 1987, 2161
BshNI	GGYRCC	1 cut(s)	1559
BsiHKAI	GWGCWC	1 cut(s)	1589
BsiHKCI	CYCGRG	2 cut(s)	329, 1322
BsiSI	CCGG	7 cut(s)	66, 95, 330, 362, 741, 751, 1323
BslFI	GGGAC	5 cut(s)	254, 540, 773, 1456, 1990
BslI	CCNNNNNNNGG	2 cut(s)	159, 757
BsmAI	GTCTC	3 cut(s)	162, 518, 984
BsmFI	GGGAC	5 cut(s)	254, 540, 773, 1456, 1990
BsnI	GGCC	8 cut(s)	65, 1014, 1619, 1664, 1801, 1853, 1987, 2161
BsoBI	CYCGRG	2 cut(s)	329, 1322
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	1562, 1589
Bsp143I	GATC	4 cut(s)	1362, 1711, 1882, 1894
BspACI	CCGC	9 cut(s)	92, 258, 286, 346, 427, 711, 891, 1371, 2163
BspANI	GGCC	8 cut(s)	65, 1014, 1619, 1664, 1801, 1853, 1987, 2161
BspCNI	CTCAG	4 cut(s)	999, 1735, 1818, 1837
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	7 cut(s)	6, 1287, 1444, 1445, 1561, 1713, 1978
BspOI	GCTAGC	2 cut(s)	417, 815
BspPI	GGATC	3 cut(s)	1706, 1719, 1889
BspQI	GCTCTTC	2 cut(s)	1577, 1815
BspT104I	TTCGAA	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	1559
BsrBI	CCGCTC	1 cut(s)	891
BsrDI	GCAATG	2 cut(s)	1049, 1101
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	1359, 1616, 2080
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	8 cut(s)	152, 329, 1015, 1246, 1321, 1322, 1620, 2178
BssMI	GATC	4 cut(s)	1362, 1711, 1882, 1894
BssNI	GRCGYC	1 cut(s)	1755
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	2 cut(s)	1246, 1620
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	4 cut(s)	154, 1017, 1841, 2180
Bst4CI	ACNGT	6 cut(s)	116, 209, 536, 829, 2096, 2146
Bst6I	CTCTTC	4 cut(s)	404, 1488, 1577, 1815
BstACI	GRCGYC	1 cut(s)	1755
BstBI	TTCGAA	1 cut(s)	666
BstDEI	CTNAG	5 cut(s)	916, 986, 1743, 1826, 1845
BstHHI	GCGC	1 cut(s)	2045
BstKTI	GATC	4 cut(s)	1365, 1714, 1885, 1897
BstMAI	GTCTC	3 cut(s)	162, 518, 984
BstMBI	GATC	4 cut(s)	1362, 1711, 1882, 1894
BstMWI	GCNNNNNNNGC	9 cut(s)	476, 651, 1020, 1055, 1208, 1802, 1841, 1850, 2183
BstNI	CCWGG	4 cut(s)	154, 1017, 1841, 2180
BstNSI	RCATGY	2 cut(s)	1966, 2135
BstSCI	CCNGG	9 cut(s)	152, 328, 329, 360, 1015, 1321, 1322, 1839, 2178
BstSFI	CTRYAG	1 cut(s)	1294
BstSLI	GKGCMC	1 cut(s)	1562
BstV1I	GCAGC	6 cut(s)	441, 751, 850, 1532, 1931, 2195
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	1711
BstYI	RGATCY	1 cut(s)	1711
BsuI	GTATCC	1 cut(s)	969
BsuRI	GGCC	8 cut(s)	65, 1014, 1619, 1664, 1801, 1853, 1987, 2161
BtrI	CACGTC	1 cut(s)	775
BtsI	GCAGTG	4 cut(s)	279, 465, 652, 1812
BtsIMutI	CAGTG	8 cut(s)	279, 465, 652, 1352, 1393, 1812, 2064, 2142
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	1 cut(s)	2045
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	7 cut(s)	1013, 1285, 1443, 1851, 1977, 2029, 2160
Cfr9I	CCCGGG	2 cut(s)	329, 1322
CseI	GACGC	2 cut(s)	502, 770
Csp6I	GTAC	4 cut(s)	694, 748, 859, 1537
CviAII	CATG	8 cut(s)	499, 688, 1006, 1432, 1963, 1967, 1993, 2132
CviQI	GTAC	4 cut(s)	694, 748, 859, 1537
DdeI	CTNAG	5 cut(s)	916, 986, 1743, 1826, 1845
DpnI	GATC	4 cut(s)	1364, 1713, 1884, 1896
DpnII	GATC	4 cut(s)	1362, 1711, 1882, 1894
DrdI	GACNNNNNNGTC	3 cut(s)	1324, 1734, 1747
DseDI	GACNNNNNNGTC	3 cut(s)	1324, 1734, 1747
EaeI	YGGCCR	3 cut(s)	1617, 1662, 1985
Eam1104I	CTCTTC	4 cut(s)	404, 1488, 1577, 1815
EarI	CTCTTC	4 cut(s)	404, 1488, 1577, 1815
EciI	GGCGGA	3 cut(s)	81, 247, 726
Eco130I	CCWWGG	2 cut(s)	1246, 1620
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	4 cut(s)	1285, 1443, 1977, 2029
Eco57I	CTGAAG	6 cut(s)	436, 612, 753, 1369, 1487, 2187
Eco88I	CYCGRG	2 cut(s)	329, 1322
EcoO109I	RGGNCCY	2 cut(s)	1285, 1443
EcoRI	GAATTC	3 cut(s)	302, 315, 506
EcoRII	CCWGG	4 cut(s)	152, 1015, 1839, 2178
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	1246, 1620
EcoT22I	ATGCAT	2 cut(s)	571, 1968
ErhI	CCWWGG	2 cut(s)	1246, 1620
FaeI	CATG	8 cut(s)	502, 691, 1009, 1435, 1966, 1970, 1996, 2135
FaqI	GGGAC	5 cut(s)	254, 540, 773, 1456, 1990
FatI	CATG	8 cut(s)	498, 687, 1005, 1431, 1962, 1966, 1992, 2131
FauI	CCCGC	2 cut(s)	293, 2170
FbaI	TGATCA	1 cut(s)	1882
FblI	GTMKAC	1 cut(s)	1758
Fnu4HI	GCNGC	7 cut(s)	430, 765, 864, 1371, 1521, 1920, 2184
Fsp4HI	GCNGC	7 cut(s)	430, 765, 864, 1371, 1521, 1920, 2184
FspBI	CTAG	5 cut(s)	59, 414, 812, 1247, 1524
GlaI	GCGC	1 cut(s)	2044
GluI	GCNGC	7 cut(s)	430, 765, 864, 1371, 1521, 1920, 2184
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	8 cut(s)	65, 1014, 1619, 1664, 1801, 1853, 1987, 2161
HapII	CCGG	7 cut(s)	66, 95, 330, 362, 741, 751, 1323
HgaI	GACGC	2 cut(s)	502, 770
HhaI	GCGC	1 cut(s)	2045
Hin1I	GRCGYC	1 cut(s)	1755
Hin1II	CATG	8 cut(s)	502, 691, 1009, 1435, 1966, 1970, 1996, 2135
Hin6I	GCGC	1 cut(s)	2043
HinP1I	GCGC	1 cut(s)	2043
HincII	GTYRAC	2 cut(s)	517, 1077
HindII	GTYRAC	2 cut(s)	517, 1077
HinfI	GANTC	3 cut(s)	10, 699, 1107
HpaII	CCGG	7 cut(s)	66, 95, 330, 362, 741, 751, 1323
HphI	GGTGA	3 cut(s)	97, 215, 1562
Hpy166II	GTNNAC	5 cut(s)	517, 694, 879, 1077, 1759
Hpy188III	TCNNGA	8 cut(s)	499, 683, 854, 1062, 1264, 1312, 1709, 1715
Hpy8I	GTNNAC	5 cut(s)	517, 694, 879, 1077, 1759
Hpy99I	CGWCG	6 cut(s)	247, 476, 773, 776, 1318, 1731
HpyAV	CCTTC	2 cut(s)	1549, 2042
HpyCH4III	ACNGT	6 cut(s)	116, 209, 536, 829, 2096, 2146
HpyCH4IV	ACGT	4 cut(s)	774, 948, 1735, 1755
HpyF10VI	GCNNNNNNNGC	9 cut(s)	476, 651, 1020, 1055, 1208, 1802, 1841, 1850, 2183
HpyF3I	CTNAG	5 cut(s)	916, 986, 1743, 1826, 1845
HpySE526I	ACGT	4 cut(s)	774, 948, 1735, 1755
Hsp92I	GRCGYC	1 cut(s)	1755
Hsp92II	CATG	8 cut(s)	502, 691, 1009, 1435, 1966, 1970, 1996, 2135
HspAI	GCGC	1 cut(s)	2043
KflI	GGGWCCC	1 cut(s)	1443
Ksp22I	TGATCA	1 cut(s)	1882
Kzo9I	GATC	4 cut(s)	1362, 1711, 1882, 1894
LguI	GCTCTTC	2 cut(s)	1577, 1815
LmnI	GCTCC	2 cut(s)	871, 941
Lsp1109I	GCAGC	6 cut(s)	441, 751, 850, 1532, 1931, 2195
LweI	GCATC	7 cut(s)	466, 480, 556, 1067, 1081, 1241, 1381
MaeI	CTAG	5 cut(s)	59, 414, 812, 1247, 1524
MaeII	ACGT	4 cut(s)	774, 948, 1735, 1755
MaeIII	GTNAC	4 cut(s)	203, 209, 406, 1451
MalI	GATC	4 cut(s)	1364, 1713, 1884, 1896
MbiI	CCGCTC	1 cut(s)	891
MboI	GATC	4 cut(s)	1362, 1711, 1882, 1894
MboII	GAAGA	7 cut(s)	391, 746, 1108, 1475, 1594, 1832, 2180
MflI	RGATCY	1 cut(s)	1711
MhlI	GDGCHC	2 cut(s)	1562, 1589
MlsI	TGGCCA	1 cut(s)	1619
MluNI	TGGCCA	1 cut(s)	1619
MlyI	GAGTC	1 cut(s)	1101
MmeI	TCCRAC	1 cut(s)	414
Mox20I	TGGCCA	1 cut(s)	1619
Mph1103I	ATGCAT	2 cut(s)	571, 1968
MroXI	GAANNNNTTC	3 cut(s)	9, 338, 1937
MscI	TGGCCA	1 cut(s)	1619
MseI	TTAA	1 cut(s)	1035
MslI	CAYNNNNRTG	7 cut(s)	743, 1232, 1336, 1548, 1575, 1685, 1971
Msp20I	TGGCCA	1 cut(s)	1619
MspA1I	CMGCKG	1 cut(s)	2165
MspI	CCGG	7 cut(s)	66, 95, 330, 362, 741, 751, 1323
MspR9I	CCNGG	9 cut(s)	154, 330, 331, 362, 1017, 1323, 1324, 1841, 2180
MvaI	CCWGG	4 cut(s)	154, 1017, 1841, 2180
MwoI	GCNNNNNNNGC	9 cut(s)	476, 651, 1020, 1055, 1208, 1802, 1841, 1850, 2183
NciI	CCSGG	5 cut(s)	330, 331, 362, 1323, 1324
NdeII	GATC	4 cut(s)	1362, 1711, 1882, 1894
NheI	GCTAGC	2 cut(s)	413, 811
NlaIII	CATG	8 cut(s)	502, 691, 1009, 1435, 1966, 1970, 1996, 2135
NlaIV	GGNNCC	7 cut(s)	6, 1287, 1444, 1445, 1561, 1713, 1978
NmeAIII	GCCGAG	1 cut(s)	1948
NmuCI	GTSAC	3 cut(s)	203, 406, 1451
NsiI	ATGCAT	2 cut(s)	571, 1968
NspI	RCATGY	2 cut(s)	1966, 2135
NspV	TTCGAA	1 cut(s)	666
OliI	CACNNNNGTG	1 cut(s)	1685
PaeI	GCATGC	1 cut(s)	1966
PagI	TCATGA	1 cut(s)	498
PciI	ACATGT	1 cut(s)	2131
PciSI	GCTCTTC	2 cut(s)	1577, 1815
PcsI	WCGNNNNNNNCGW	1 cut(s)	768
PdmI	GAANNNNTTC	3 cut(s)	9, 338, 1937
PfeI	GAWTC	2 cut(s)	10, 699
PflFI	GACNNNGTC	1 cut(s)	1734
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	7 cut(s)	431, 766, 865, 1372, 1522, 1921, 2185
PleI	GAGTC	1 cut(s)	1101
PpsI	GAGTC	1 cut(s)	1101
PpuMI	RGGWCCY	2 cut(s)	1285, 1443
PscI	ACATGT	1 cut(s)	2131
Psp5II	RGGWCCY	2 cut(s)	1285, 1443
Psp6I	CCWGG	4 cut(s)	152, 1015, 1839, 2178
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	4 cut(s)	152, 1015, 1839, 2178
PspN4I	GGNNCC	7 cut(s)	6, 1287, 1444, 1445, 1561, 1713, 1978
PspPI	GGNCC	7 cut(s)	1013, 1285, 1443, 1851, 1977, 2029, 2160
PspPPI	RGGWCCY	2 cut(s)	1285, 1443
PsuI	RGATCY	1 cut(s)	1711
PsyI	GACNNNGTC	1 cut(s)	1734
RsaI	GTAC	4 cut(s)	695, 749, 860, 1538
RsaNI	GTAC	4 cut(s)	694, 748, 859, 1537
RseI	CAYNNNNRTG	7 cut(s)	743, 1232, 1336, 1548, 1575, 1685, 1971
SapI	GCTCTTC	2 cut(s)	1577, 1815
SaqAI	TTAA	1 cut(s)	1035
SatI	GCNGC	7 cut(s)	430, 765, 864, 1371, 1521, 1920, 2184
Sau3AI	GATC	4 cut(s)	1362, 1711, 1882, 1894
Sau96I	GGNCC	7 cut(s)	1013, 1285, 1443, 1851, 1977, 2029, 2160
SchI	GAGTC	1 cut(s)	1101
ScrFI	CCNGG	9 cut(s)	154, 330, 331, 362, 1017, 1323, 1324, 1841, 2180
SduI	GDGCHC	2 cut(s)	1562, 1589
SfaNI	GCATC	7 cut(s)	466, 480, 556, 1067, 1081, 1241, 1381
SfcI	CTRYAG	1 cut(s)	1294
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	4 cut(s)	1285, 1443, 1977, 2029
SmaI	CCCGGG	2 cut(s)	331, 1324
SmiMI	CAYNNNNRTG	7 cut(s)	743, 1232, 1336, 1548, 1575, 1685, 1971
SmlI	CTYRAG	2 cut(s)	2015, 2187
SmoI	CTYRAG	2 cut(s)	2015, 2187
SphI	GCATGC	1 cut(s)	1966
SsiI	CCGC	9 cut(s)	92, 258, 286, 346, 427, 711, 891, 1371, 2163
SspI	AATATT	1 cut(s)	2125
SspMI	CTAG	5 cut(s)	59, 414, 812, 1247, 1524
StyD4I	CCNGG	9 cut(s)	152, 328, 329, 360, 1015, 1321, 1322, 1839, 2178
StyI	CCWWGG	2 cut(s)	1246, 1620
TaaI	ACNGT	6 cut(s)	116, 209, 536, 829, 2096, 2146
TaiI	ACGT	4 cut(s)	777, 951, 1738, 1758
TaqI	TCGA	5 cut(s)	111, 137, 666, 846, 1110
TaqII	GACCGA	1 cut(s)	1094
TauI	GCSGC	1 cut(s)	1373
TfiI	GAWTC	2 cut(s)	10, 699
Tru1I	TTAA	1 cut(s)	1035
Tru9I	TTAA	1 cut(s)	1035
TscAI	CASTG	8 cut(s)	286, 472, 652, 1359, 1393, 1812, 2071, 2149
TseFI	GTSAC	3 cut(s)	203, 406, 1451
TseI	GCWGC	6 cut(s)	429, 764, 863, 1520, 1919, 2183
Tsp45I	GTSAC	3 cut(s)	203, 406, 1451
TspDTI	ATGAA	6 cut(s)	331, 357, 487, 568, 651, 2009
TspGWI	ACGGA	4 cut(s)	231, 1326, 1439, 1887
TspMI	CCCGGG	2 cut(s)	329, 1322
TspRI	CASTG	8 cut(s)	286, 472, 652, 1359, 1393, 1812, 2071, 2149
Tth111I	GACNNNGTC	1 cut(s)	1734
Van91I	CCANNNNNTGG	1 cut(s)	159
VpaK11BI	GGWCC	4 cut(s)	1285, 1443, 1977, 2029
XapI	RAATTY	5 cut(s)	302, 315, 506, 615, 2105
XceI	RCATGY	2 cut(s)	1966, 2135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1485
XmaI	CCCGGG	2 cut(s)	329, 1322
XmaJI	CCTAGG	1 cut(s)	1246
XmiI	GTMKAC	1 cut(s)	1758
XmnI	GAANNNNTTC	3 cut(s)	9, 338, 1937
XspI	CTAG	5 cut(s)	59, 414, 812, 1247, 1524
ZraI	GACGTC	1 cut(s)	1756
Zsp2I	ATGCAT	2 cut(s)	571, 1968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.