Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000121

Physical Location & Seq

Genomic Coordinates Forward (+)

60138726 .. 60140324

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGAAACCAATCATCACTCTTCTCTACCTCTCCTTGTTTCTCCACATCCTCACTCTCTTCGTCGCCGGTCAGGCGCCACCATACACTCCTGTTGACAATATCACCCTCGCCTGCGGCAATTCCGGCCAACCGAGCTCCAATGTTGACCTCAGAAAGTGGAGTGGAGATATCGACTCAAAATTCACCCCAATAGGTAACGCATCCCAATCCATAGATGCACCGCGGTCGTCCACCGCCAGCGACGTCCCTTACACCAAAGCTCGGCTCTCTCGCTCCAAATTCACTTACACAATTCCCCTCTCTCCCGGCCAAAAGTTCATCCGCTTGCATTTCAATCCAGATACATACAACCCGAACTTCCAACGCTCCAACTCCCTTTTCTCCGTCACCGCCGCCGGCTTCACTCTCCTTAAAGACTTCAACGCCTCCGTCACCGCAGACGCTTCCGGTGAGTCCCCGCTGGTCAGAGAATTCTGTTTAAACATCGAGACAGGAGAGAGACTCAACATCACCTTCACACCAAGCAAAGATGCGTACGCTTTCATCAACGGAATCGAAATCGTGTCCATGCCCACCGGTCTTTACTATACTTCTTCAGCTAATTTCTTCGAGACCATCACAGGCTCATATCCGATCGAAAACAACACAGCTCTGGAGATGGTGTACCGAATCAACGTCGGCGGAGGCCCCATCTCGCCGAACGAAGACACAGGAATGTACCGGACTTGGGAAGCTGCCGACGATATTTATTTGGATGATATAAGTAAAAAATTCAGCGTGCTACCACAGAACAATACAATCGAGCTCAACTTCGTCGAAGTTCCAAAATACTCTGCCCCAAAACCAGTTTACACAACAGGTCGGTCAATGGGGATGAACAAAACCATCAACAAGAGCTATAACCTCACATGGGTATTTCCCTTAGATCCCAAGTTTTATTACCTGGTGAGACTCCATTTCTGTGAATTTGAATCTGATATTACCAAGTATGGCGATCGGTCGTTTCAAATCTACATGGCCAATCAAACAGCAGAAGAACTTGCAGATGTCATCGGATGGAGTGGAGCTAATGGGAATCCAGTTTACAGAGACTACGTTGTGGGCATGTTCATGCCTCCGGTTGGAAGCCAGAAGAAAGTGAACCTCTTTCTAGAACTTGCAGCGCTACAGAGAGACTCGTATACTGTTTACAACGATGCCATCTTGAACGGGCTGGAAATCTTCAAGCTCAATGACTCGAATGGGAATCTGGCCGGATCCAACCCCGATTCACCTCCACTAGCACAGCAAATCCCCAAAAGTTCAACCACAAGTAAATCACATGCTTCTTTGCTGCCCATCATAGTTGCTGTACTCTACGGAGTCCTACTTCTTCTCTCTGTTCTTGGAATTTTAGTATTCAGGCGAGGAAGGAAAGTCGAGGAGTCTAGTTCCAGCCAGGGAAAGTTGACTTTACCGTCCTGTTTGTGTCGTTACTTTTCACTACCGGAAATGAAAGCCGCCACTCAAAACTTCAATGATTCTTGCATCATAGGAGTTGGAGGGTTTGGCCATGTATACGAAGGATTTCTTGCGGATGGGGCTACCCATAACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009741 GO:0009787 GO:0009788 GO:0009791 GO:0009856 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010118 GO:0010483 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0030308 GO:0030312 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043680 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044426 GO:0044462 GO:0044464 GO:0044703 GO:0044706 GO:0045926 GO:0046777 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051703 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

532

Amino Acids

58.58

Weight (kDa)

5.79

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	38 - 409	4.6e-31	Malectin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000121)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46570 FvH4_6g46580 FvH4_6g46610 FvH4_6g46620 FvH4_6g46640 FvH4_6g46680
malus_domestica	MD03G1063600.v1.1 MD03G1063700.v1.1 MD09G1069300.v1.1 MD09G1069400.v1.1 MD11G1067200.v1.1 MD11G1070300.v1.1 MD11G1153300.v1.1 MD17G1060300.v1.1 MD17G1061900.v1.1 MD17G1062100.v1.1 MD17G1062300.v1.1 MD17G1062400.v1.1 MD17G1063000.v1.1 MD17G1063200.v1.1 MD17G1063600.v1.1
prunus_persica	Prupe.3G246200_v2.0.a1 Prupe.3G251000_v2.0.a1 Prupe.3G251100_v2.0.a1 Prupe.3G251200_v2.0.a1 Prupe.3G251600_v2.0.a1 Prupe.3G251700_v2.0.a1 Prupe.3G251800_v2.0.a1 Prupe.3G251900_v2.0.a1
pyrus_communis	pycom03g05070 pycom03g05100 pycom12433g00070 pycom17g06000 pycom17g06170 pycom17g06180 pycom17g06200 pycom17g06210 pycom17g06280 pycom17g06300 pycom17g06310 pycom17g06320 pycom17g06330 pycom17g06350 pycom17g06370 pycom17g06380 pycom17g06400
rosa_chinensis	RchiOBHm_Chr1g0321851 RchiOBHm_Chr1g0321911 RchiOBHm_Chr1g0323951 RchiOBHm_Chr1g0361941 RchiOBHm_Chr2g0164711 RchiOBHm_Chr2g0165301 RchiOBHm_Chr2g0165311 RchiOBHm_Chr2g0165321 RchiOBHm_Chr2g0165351 RchiOBHm_Chr2g0165431 RchiOBHm_Chr2g0165461 RchiOBHm_Chr2g0165491 RchiOBHm_Chr2g0165511 RchiOBHm_Chr2g0165521 RchiOBHm_Chr2g0165531 RchiOBHm_Chr3g0481631 RchiOBHm_Chr3g0481801 RchiOBHm_Chr3g0481811 RchiOBHm_Chr3g0481821 RchiOBHm_Chr3g0481831 RchiOBHm_Chr4g0400291 RchiOBHm_Chr4g0400371 RchiOBHm_Chr4g0400391 RchiOBHm_Chr6g0274711 RchiOBHm_Chr6g0274721 RchiOBHm_Chr7g0211011
rosa_laevigata	RLG00000002260 RLG00000002262 RLG00000002263 RLG00000003027 RLG00000003028 RLG00000009196 RLG00000009197 RLG00000012573 RLG00000020400 RLG00000021523 RLG00000021524 RLG00000021525 RLG00000021527 RLG00000021528 RLG00000021529 RLG00000021530 RLG00000021532 RLG00000021533 RLG00000021534 RLG00000021535 RLG00000021537 RLG00000023384 RLG00000027681 RLG00000027682 RLG00000027685 RLG00000030240 RLG00000030401
rosa_multiflora	Rmu_co7998078.1_g000001 Rmu_co8009032.1_g000001 Rmu_co8326071.1_g000001 Rmu_co8333709.1_g000001 Rmu_co8362007.1_g000001 Rmu_co8369261.1_g000001 Rmu_co8391219.1_g000001 Rmu_co8456951.1_g000001 Rmu_co8461523.1_g000001 Rmu_sc0000427.1_g000009 Rmu_sc0000427.1_g000032 Rmu_sc0000427.1_g000033 Rmu_sc0000521.1_g000005 Rmu_sc0000521.1_g000008 Rmu_sc0000521.1_g000009 Rmu_sc0000655.1_g000016 Rmu_sc0000655.1_g000017 Rmu_sc0000655.1_g000018 Rmu_sc0000675.1_g000003 Rmu_sc0000795.1_g000018 Rmu_sc0000795.1_g000083 Rmu_sc0001306.1_g000042 Rmu_sc0001306.1_g000043 Rmu_sc0001873.1_g000001 Rmu_sc0001873.1_g000010 Rmu_sc0002529.1_g000002 Rmu_sc0002529.1_g000004 Rmu_sc0003410.1_g000004 Rmu_sc0003909.1_g000010 Rmu_sc0004097.1_g000001 Rmu_sc0005425.1_g000003 Rmu_sc0005425.1_g000004 Rmu_sc0005425.1_g000010 Rmu_sc0005425.1_g000012 Rmu_sc0005425.1_g000017 Rmu_sc0006223.1_g000014 Rmu_sc0006399.1_g000007 Rmu_sc0010324.1_g000001 Rmu_sc0010409.1_g000005 Rmu_sc0013532.1_g000005 Rmu_sc0016601.1_g000002 Rmu_sc0016601.1_g000003 Rmu_sc0016601.1_g000006 Rmu_sc0017773.1_g000001 Rmu_sc0017773.1_g000002 Rmu_sc0019514.1_g000002 Rmu_sc0021575.1_g000001 Rmu_sc0023720.1_g000002 Rmu_sc0030898.1_g000001 Rmu_sc0033982.1_g000001 Rmu_sc0034651.1_g000001 Rmu_sc0038482.1_g000001 Rmu_sc0038644.1_g000001 Rmu_sc0038644.1_g000003 Rmu_sc0039243.1_g000001 Rmu_sc0042715.1_g000001 Rmu_ssc0000124.1_g000003
rosa_roxburghii	Rroxscaffold_2G00085740 Rroxscaffold_2G00085760 Rroxscaffold_2G00085780 Rroxscaffold_2G00085800 Rroxscaffold_2G00085830 Rroxscaffold_2G00085850 Rroxscaffold_2G00085860 Rroxscaffold_4G00294610 Rroxscaffold_4G00326070 Rroxscaffold_4G00326080 Rroxscaffold_4G00327420 Rroxscaffold_4G00327430 Rroxscaffold_4G00327460 Rroxscaffold_4G00327470 Rroxscaffold_5G00345350 Rroxscaffold_6G00399890 Rroxscaffold_6G00400250 Rroxscaffold_7G00194000 Rroxscaffold_7G00194020 Rroxscaffold_7G00194050
rosa_rugosa	Rorug01G0034300 Rorug01G0034500 Rorug01G0040700 Rorug01G0064300 Rorug02G0513700 Rorug02G0513800 Rorug02G0513900 Rorug02G0514000 Rorug02G0514000 Rorug02G0514100 Rorug02G0514300 Rorug02G0514400 Rorug02G0514700 Rorug02G0515000 Rorug02G0515100 Rorug02G0515300 Rorug02G0515500 Rorug02G0515600 Rorug02G0515800 Rorug02G0515900 Rorug02G0516000 Rorug03G0193200 Rorug04G0024600 Rorug06G0083100 Rorug06G0085200 Rorug07G0188600
rosa_samantha	Rh1CG234000 Rh2DG603700 Rh2DG603800 Rh2DG603900 Rh6BG203000
rosa_wichuraiana	Rw0G010290 Rw1G004240 Rw1G005000 Rw1G026960 Rw2G048310 Rw2G048320 Rw2G048330 Rw2G048350 Rw2G048360 Rw2G048380 Rw2G048430 Rw2G048460 Rw2G048500 Rw2G048510 Rw2G048520 Rw2G048530 Rw3G021810 Rw4G008270 Rw6G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1456
AatII	GACGTC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	73
AccI	GTMKAC	2 cut(s)	1181, 1557
AccII	CGCG	1 cut(s)	223
AclWI	GGATC	3 cut(s)	920, 1251, 1264
AcoI	YGGCCR	5 cut(s)	124, 307, 1017, 1251, 1549
AcsI	RAATTY	6 cut(s)	179, 278, 470, 770, 965, 1389
AcuI	CTGAAG	1 cut(s)	579
AcyI	GRCGYC	2 cut(s)	74, 243
AfaI	GTAC	4 cut(s)	536, 665, 719, 1353
AfeI	AGCGCT	1 cut(s)	1164
AfiI	CCNNNNNNNGG	4 cut(s)	261, 727, 910, 1121
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	8 cut(s)	334, 421, 971, 1007, 1207, 1225, 1305, 1516
AjnI	CCWGG	2 cut(s)	942, 1437
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	9 cut(s)	135, 260, 599, 650, 734, 805, 897, 1067, 1228
AluI	AGCT	9 cut(s)	135, 260, 599, 650, 734, 805, 897, 1067, 1228
Alw21I	GWGCWC	2 cut(s)	137, 807
Alw26I	GTCTC	6 cut(s)	482, 493, 605, 943, 1083, 1167
AlwI	GGATC	3 cut(s)	920, 1251, 1264
Aor51HI	AGCGCT	1 cut(s)	1164
AoxI	GGCC	6 cut(s)	124, 307, 685, 1017, 1251, 1549
ApeKI	GCWGC	3 cut(s)	734, 1160, 1333
ApoI	RAATTY	6 cut(s)	179, 278, 470, 770, 965, 1389
AsiGI	ACCGGT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	1566
AspLEI	GCGC	2 cut(s)	76, 1165
AspS9I	GGNCC	1 cut(s)	686
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	8 cut(s)	94, 175, 379, 424, 461, 502, 958, 1263
BalI	TGGCCA	2 cut(s)	1019, 1551
BamHI	GGATCC	1 cut(s)	1256
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	137, 807
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	2 cut(s)	137, 807
BbvI	GCAGC	3 cut(s)	721, 1172, 1320
BccI	CCATC	8 cut(s)	623, 652, 698, 893, 1050, 1208, 1346, 1571
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	2 cut(s)	944, 1439
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	6 cut(s)	482, 493, 605, 943, 1083, 1167
BfaI	CTAG	3 cut(s)	1151, 1280, 1428
BfmI	CTRYAG	1 cut(s)	1166
BfoI	RGCGCY	2 cut(s)	77, 1166
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	115, 393, 735, 1161, 1334, 1500
BlsI	GCNGC	6 cut(s)	116, 394, 736, 1162, 1335, 1501
Bme1390I	CCNGG	3 cut(s)	306, 944, 1439
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	3 cut(s)	75, 688, 1258
BmrFI	CCNGG	3 cut(s)	306, 944, 1439
BmsI	GCATC	5 cut(s)	205, 209, 520, 1186, 1536
BpiI	GAAGAC	1 cut(s)	711
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	306
BsaHI	GRCGYC	2 cut(s)	74, 243
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	2 cut(s)	221, 1438
BsaWI	WCCGGW	5 cut(s)	446, 575, 720, 1117, 1486
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	4 cut(s)	261, 727, 910, 1121
Bse118I	RCCGGY	3 cut(s)	65, 395, 575
Bse1I	ACTGG	2 cut(s)	845, 1079
BseBI	CCWGG	2 cut(s)	944, 1439
BseDI	CCNNGG	2 cut(s)	221, 1438
BseGI	GGATG	7 cut(s)	45, 200, 318, 760, 879, 1061, 1582
BseLI	CCNNNNNNNGG	4 cut(s)	261, 727, 910, 1121
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	2 cut(s)	845, 1079
BseRI	GAGGAG	1 cut(s)	1436
BseXI	GCAGC	3 cut(s)	721, 1172, 1320
Bsh1236I	CGCG	1 cut(s)	223
Bsh1285I	CGRYCG	4 cut(s)	227, 636, 997, 1001
BshFI	GGCC	6 cut(s)	126, 309, 687, 1019, 1253, 1551
BshNI	GGYRCC	1 cut(s)	73
BshTI	ACCGGT	1 cut(s)	575
BsiEI	CGRYCG	4 cut(s)	227, 636, 997, 1001
BsiHKAI	GWGCWC	2 cut(s)	137, 807
BsiWI	CGTACG	1 cut(s)	534
BslFI	GGGAC	2 cut(s)	230, 439
BslI	CCNNNNNNNGG	4 cut(s)	261, 727, 910, 1121
BsmAI	GTCTC	6 cut(s)	482, 493, 605, 943, 1083, 1167
BsmFI	GGGAC	2 cut(s)	230, 439
BsnI	GGCC	6 cut(s)	126, 309, 687, 1019, 1253, 1551
Bso31I	GGTCTC	1 cut(s)	605
Bsp1286I	GDGCHC	2 cut(s)	137, 807
Bsp143I	GATC	4 cut(s)	633, 925, 994, 1256
BspANI	GGCC	6 cut(s)	126, 309, 687, 1019, 1253, 1551
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	75, 688, 1258
BspPI	GGATC	3 cut(s)	920, 1251, 1264
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	605
BsrFI	RCCGGY	3 cut(s)	65, 395, 575
BsrI	ACTGG	2 cut(s)	845, 1079
BssAI	RCCGGY	3 cut(s)	65, 395, 575
BssECI	CCNNGG	2 cut(s)	221, 1438
BssMI	GATC	4 cut(s)	633, 925, 994, 1256
BssNAI	GTATAC	2 cut(s)	1182, 1558
BssNI	GRCGYC	2 cut(s)	74, 243
Bst1107I	GTATAC	2 cut(s)	1182, 1558
Bst2UI	CCWGG	2 cut(s)	944, 1439
Bst4CI	ACNGT	3 cut(s)	1186, 1458, 1595
Bst6I	CTCTTC	2 cut(s)	24, 62
BstACI	GRCGYC	2 cut(s)	74, 243
BstC8I	GCNNGC	5 cut(s)	112, 238, 326, 397, 779
BstDEI	CTNAG	2 cut(s)	149, 922
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	7 cut(s)	45, 200, 318, 760, 879, 1061, 1582
BstFNI	CGCG	1 cut(s)	223
BstH2I	RGCGCY	2 cut(s)	77, 1166
BstHHI	GCGC	2 cut(s)	76, 1165
BstKTI	GATC	4 cut(s)	636, 928, 997, 1259
BstMAI	GTCTC	6 cut(s)	482, 493, 605, 943, 1083, 1167
BstMBI	GATC	4 cut(s)	633, 925, 994, 1256
BstMCI	CGRYCG	4 cut(s)	227, 636, 997, 1001
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 123, 132, 1580
BstNI	CCWGG	2 cut(s)	944, 1439
BstNSI	RCATGY	2 cut(s)	1108, 1325
BstSCI	CCNGG	3 cut(s)	304, 942, 1437
BstSFI	CTRYAG	1 cut(s)	1166
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	721, 1172, 1320
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	2 cut(s)	925, 1256
BstYI	RGATCY	2 cut(s)	925, 1256
BstZ17I	GTATAC	2 cut(s)	1182, 1558
BsuRI	GGCC	6 cut(s)	126, 309, 687, 1019, 1253, 1551
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	7 cut(s)	45, 200, 318, 760, 879, 1061, 1582
Cac8I	GCNNGC	5 cut(s)	112, 238, 326, 397, 779
CfoI	GCGC	2 cut(s)	76, 1165
Cfr10I	RCCGGY	3 cut(s)	65, 395, 575
Cfr13I	GGNCC	1 cut(s)	686
Cfr42I	CCGCGG	1 cut(s)	224
CseI	GACGC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	942
Csp6I	GTAC	4 cut(s)	535, 664, 718, 1352
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	7 cut(s)	568, 909, 1015, 1105, 1111, 1322, 1553
CviQI	GTAC	4 cut(s)	535, 664, 718, 1352
DdeI	CTNAG	2 cut(s)	149, 922
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	4 cut(s)	635, 927, 996, 1258
DpnII	GATC	4 cut(s)	633, 925, 994, 1256
DraI	TTTAAA	1 cut(s)	480
DrdI	GACNNNNNNGTC	1 cut(s)	1456
DseDI	GACNNNNNNGTC	1 cut(s)	1456
EaeI	YGGCCR	5 cut(s)	124, 307, 1017, 1251, 1549
Eam1104I	CTCTTC	2 cut(s)	24, 62
EarI	CTCTTC	2 cut(s)	24, 62
EciI	GGCGGA	1 cut(s)	696
Ecl136II	GAGCTC	2 cut(s)	135, 805
Eco24I	GRGCYC	2 cut(s)	137, 807
Eco31I	GGTCTC	1 cut(s)	605
Eco32I	GATATC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	1164
Eco53kI	GAGCTC	2 cut(s)	135, 805
Eco57I	CTGAAG	1 cut(s)	579
EcoICRI	GAGCTC	2 cut(s)	135, 805
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	2 cut(s)	942, 1437
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	137, 807
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
FaeI	CATG	7 cut(s)	571, 912, 1018, 1108, 1114, 1325, 1556
FalI	AAGNNNNNCTT	2 cut(s)	1554, 1586
FaqI	GGGAC	2 cut(s)	230, 439
FatI	CATG	7 cut(s)	567, 908, 1014, 1104, 1110, 1321, 1552
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	2 cut(s)	1181, 1557
Fnu4HI	GCNGC	6 cut(s)	115, 393, 735, 1161, 1334, 1500
FokI	GGATG	7 cut(s)	32, 187, 305, 767, 886, 1068, 1589
FriOI	GRGCYC	2 cut(s)	137, 807
Fsp4HI	GCNGC	6 cut(s)	115, 393, 735, 1161, 1334, 1500
FspBI	CTAG	3 cut(s)	1151, 1280, 1428
GlaI	GCGC	2 cut(s)	75, 1164
GluI	GCNGC	6 cut(s)	115, 393, 735, 1161, 1334, 1500
GsuI	CTGGAG	1 cut(s)	674
HaeII	RGCGCY	2 cut(s)	77, 1166
HaeIII	GGCC	6 cut(s)	126, 309, 687, 1019, 1253, 1551
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	2 cut(s)	76, 1165
Hin1I	GRCGYC	2 cut(s)	74, 243
Hin1II	CATG	7 cut(s)	571, 912, 1018, 1108, 1114, 1325, 1556
Hin6I	GCGC	2 cut(s)	74, 1163
HinP1I	GCGC	2 cut(s)	74, 1163
HincII	GTYRAC	3 cut(s)	94, 145, 1449
HindII	GTYRAC	3 cut(s)	94, 145, 1449
HphI	GGTGA	8 cut(s)	94, 175, 379, 424, 461, 502, 958, 1263
Hpy188I	TCNGA	5 cut(s)	152, 467, 633, 976, 1055
Hpy188III	TCNNGA	6 cut(s)	338, 487, 610, 653, 1151, 1204
Hpy99I	CGWCG	5 cut(s)	65, 245, 680, 743, 818
HpyAV	CCTTC	3 cut(s)	523, 1404, 1556
HpyCH4III	ACNGT	3 cut(s)	1186, 1458, 1595
HpyCH4IV	ACGT	3 cut(s)	243, 675, 1095
HpyCH4V	TGCA	5 cut(s)	218, 328, 1043, 1160, 1527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 123, 132, 1580
HpyF3I	CTNAG	2 cut(s)	149, 922
HpySE526I	ACGT	3 cut(s)	243, 675, 1095
Hsp92I	GRCGYC	2 cut(s)	74, 243
Hsp92II	CATG	7 cut(s)	571, 912, 1018, 1108, 1114, 1325, 1556
HspAI	GCGC	2 cut(s)	74, 1163
KasI	GGCGCC	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
KspI	CCGCGG	1 cut(s)	224
Kzo9I	GATC	4 cut(s)	633, 925, 994, 1256
LmnI	GCTCC	4 cut(s)	140, 278, 371, 1064
Lsp1109I	GCAGC	3 cut(s)	721, 1172, 1320
LweI	GCATC	5 cut(s)	205, 209, 520, 1186, 1536
MabI	ACCWGGT	1 cut(s)	942
MaeI	CTAG	3 cut(s)	1151, 1280, 1428
MaeII	ACGT	3 cut(s)	243, 675, 1095
MaeIII	GTNAC	4 cut(s)	194, 385, 430, 1472
MalI	GATC	4 cut(s)	635, 927, 996, 1258
MboI	GATC	4 cut(s)	633, 925, 994, 1256
MboII	GAAGA	9 cut(s)	11, 49, 585, 598, 716, 1046, 1144, 1213, 1364
MflI	RGATCY	2 cut(s)	925, 1256
MhlI	GDGCHC	2 cut(s)	137, 807
MlsI	TGGCCA	2 cut(s)	1019, 1551
MluCI	AATT	9 cut(s)	118, 179, 278, 291, 470, 601, 770, 965, 1389
MluNI	TGGCCA	2 cut(s)	1019, 1551
Mly113I	GGCGCC	1 cut(s)	74
MlyI	GAGTC	8 cut(s)	167, 461, 495, 945, 1169, 1229, 1371, 1433
MmeI	TCCRAC	5 cut(s)	385, 393, 1102, 1284, 1519
Mox20I	TGGCCA	2 cut(s)	1019, 1551
MroNI	GCCGGC	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	1566
MscI	TGGCCA	2 cut(s)	1019, 1551
MseI	TTAA	2 cut(s)	411, 479
MslI	CAYNNNNRTG	3 cut(s)	713, 960, 1109
Msp20I	TGGCCA	2 cut(s)	1019, 1551
MspA1I	CMGCKG	2 cut(s)	223, 460
MspR9I	CCNGG	3 cut(s)	306, 944, 1439
MssI	GTTTAAAC	1 cut(s)	480
MvaI	CCWGG	2 cut(s)	944, 1439
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	4 cut(s)	71, 123, 132, 1580
NaeI	GCCGGC	1 cut(s)	397
NarI	GGCGCC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	4 cut(s)	633, 925, 994, 1256
NgoMIV	GCCGGC	1 cut(s)	395
NlaIII	CATG	7 cut(s)	571, 912, 1018, 1108, 1114, 1325, 1556
NlaIV	GGNNCC	3 cut(s)	75, 688, 1258
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	385, 430
NspI	RCATGY	2 cut(s)	1108, 1325
PdiI	GCCGGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	1566
PfeI	GAWTC	7 cut(s)	552, 669, 971, 1075, 1246, 1268, 1520
Pfl23II	CGTACG	1 cut(s)	534
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	6 cut(s)	116, 394, 736, 1162, 1335, 1501
Ple19I	CGATCG	2 cut(s)	636, 997
PleI	GAGTC	8 cut(s)	167, 460, 495, 945, 1169, 1229, 1370, 1432
PluTI	GGCGCC	1 cut(s)	77
PmeI	GTTTAAAC	1 cut(s)	480
PpsI	GAGTC	8 cut(s)	167, 460, 495, 945, 1169, 1229, 1370, 1432
Psp124BI	GAGCTC	2 cut(s)	137, 807
Psp6I	CCWGG	2 cut(s)	942, 1437
PspGI	CCWGG	2 cut(s)	942, 1437
PspLI	CGTACG	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	75, 688, 1258
PspPI	GGNCC	1 cut(s)	686
PsuI	RGATCY	2 cut(s)	925, 1256
PvuI	CGATCG	2 cut(s)	636, 997
RsaI	GTAC	4 cut(s)	536, 665, 719, 1353
RsaNI	GTAC	4 cut(s)	535, 664, 718, 1352
RseI	CAYNNNNRTG	3 cut(s)	713, 960, 1109
SacI	GAGCTC	2 cut(s)	137, 807
SacII	CCGCGG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	411, 479
SatI	GCNGC	6 cut(s)	115, 393, 735, 1161, 1334, 1500
Sau3AI	GATC	4 cut(s)	633, 925, 994, 1256
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	8 cut(s)	167, 461, 495, 945, 1169, 1229, 1371, 1433
ScrFI	CCNGG	3 cut(s)	306, 944, 1439
SduI	GDGCHC	2 cut(s)	137, 807
SexAI	ACCWGGT	1 cut(s)	942
SfaNI	GCATC	5 cut(s)	205, 209, 520, 1186, 1536
SfcI	CTRYAG	1 cut(s)	1166
SfoI	GGCGCC	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	224
SgrBI	CCGCGG	1 cut(s)	224
SmiMI	CAYNNNNRTG	3 cut(s)	713, 960, 1109
Sse9I	AATT	9 cut(s)	118, 179, 278, 291, 470, 601, 770, 965, 1389
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	3 cut(s)	1151, 1280, 1428
SstI	GAGCTC	2 cut(s)	137, 807
StyD4I	CCNGG	3 cut(s)	304, 942, 1437
TaaI	ACNGT	3 cut(s)	1186, 1458, 1595
TaiI	ACGT	3 cut(s)	246, 678, 1098
TaqI	TCGA	9 cut(s)	171, 486, 555, 609, 636, 801, 816, 1238, 1419
TaqII	GACCGA	2 cut(s)	852, 987
TasI	AATT	9 cut(s)	118, 179, 278, 291, 470, 601, 770, 965, 1389
TatI	WGTACW	1 cut(s)	1351
TauI	GCSGC	3 cut(s)	117, 395, 1502
TfiI	GAWTC	7 cut(s)	552, 669, 971, 1075, 1246, 1268, 1520
Tru1I	TTAA	2 cut(s)	411, 479
Tru9I	TTAA	2 cut(s)	411, 479
TseFI	GTSAC	2 cut(s)	385, 430
TseI	GCWGC	3 cut(s)	734, 1160, 1333
Tsp45I	GTSAC	2 cut(s)	385, 430
TspDTI	ATGAA	6 cut(s)	17, 307, 532, 890, 1099, 1508
TspGWI	ACGGA	4 cut(s)	373, 418, 564, 1374
XapI	RAATTY	6 cut(s)	179, 278, 470, 770, 965, 1389
XbaI	TCTAGA	1 cut(s)	1150
XceI	RCATGY	2 cut(s)	1108, 1325
XmiI	GTMKAC	2 cut(s)	1181, 1557
XmnI	GAANNNNTTC	1 cut(s)	1566
XspI	CTAG	3 cut(s)	1151, 1280, 1428
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.