Rh1CG084500

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001683
Physical Location & Seq
Forward (+)
17634900 .. 17642273
7374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG084500.1

Sequence Viewer

Length: 585 bp
ATGGCTAGAGGTTCTAAACACCACGATTGCCCCATAACCTCAAAGACAAAAAGAAAATTTTGTTCTCAACCTTCTCAGTCAGTAGCGGATGATGGTATACTAGAGGCTAGTGTTGATACTGGGGAAGAACAAGCTTCTGAACCCTTTACAGATGCAGATGAGCCTCTAAGTGGTCCATTTCCGGGAGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCTATATGGTTTAATAAGGAACGTGATCCGTTGAAACTTCAGAACCATTCATATAAGCTCTCACACAATGGAGTTGTTGTGTCAGCCTGTTGTGAGACGTGGCAGCCTGAGACGAATACATTTCACTTACCCTTTGGTATTCCAATTCAGGGTGATTCCATATCTGTACCTGAGGTTTCCCCTCATCTTCGTGTTGAATATTCAAAGAATGAGCCACGAGTGAATCGTTGGGAACCTCGAAAAGATGCAGATATTGTGGAACCATATTATCCTGATAGGGTTCTAAGACAATTTGGTCGAGTTCAAACAATTCCTTGCAACCCTTACACCCCATCTCGTGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

194

Amino Acids

21.78

Weight (kDa)

6.44

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 163 - 186 6.6e-06 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 97
AciI CCGC 1 cut(s) 86
AclWI GGATC 2 cut(s) 191, 257
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 260
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 3 cut(s) 170, 182, 386
AgsI TTSAA 5 cut(s) 211, 271, 434, 441, 542
AjiI CACGTC 1 cut(s) 336
AluBI AGCT 4 cut(s) 134, 216, 236, 295
AluI AGCT 4 cut(s) 134, 216, 236, 295
Alw26I GTCTC 2 cut(s) 326, 341
AlwI GGATC 2 cut(s) 191, 257
ApeKI GCWGC 3 cut(s) 233, 236, 340
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 173, 188
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 401
AvaII GGWCC 2 cut(s) 173, 188
AxyI CCTNAGG 1 cut(s) 408
BauI CACGAG 2 cut(s) 453, 573
BbvI GCAGC 3 cut(s) 223, 245, 352
BccI CCATC 3 cut(s) 86, 208, 577
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 326, 341
BfaI CTAG 3 cut(s) 6, 101, 108
BisI GCNGC 3 cut(s) 234, 237, 341
BlsI GCNGC 3 cut(s) 235, 238, 342
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 173, 188
BmgBI CACGTC 1 cut(s) 336
BmgT120I GGNCC 2 cut(s) 173, 188
BmiI GGNNCC 2 cut(s) 471, 498
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 142, 472
BmuI ACTGGG 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 182, 386
Bse1I ACTGG 1 cut(s) 124
Bse21I CCTNAGG 1 cut(s) 408
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 3 cut(s) 170, 182, 386
BseMII CTCAG 3 cut(s) 89, 336, 399
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 223, 245, 352
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 3 cut(s) 170, 182, 386
BsmAI GTCTC 2 cut(s) 326, 341
BsmBI CGTCTC 2 cut(s) 326, 341
Bsp143I GATC 2 cut(s) 196, 262
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 3 cut(s) 88, 337, 400
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 471, 498
BspPI GGATC 2 cut(s) 191, 257
BspQI GCTCTTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 124
BssMI GATC 2 cut(s) 196, 262
BssNAI GTATAC 1 cut(s) 98
BssSI CACGAG 2 cut(s) 453, 573
Bst1107I GTATAC 1 cut(s) 98
Bst2BI CACGAG 2 cut(s) 453, 573
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 5 cut(s) 75, 167, 345, 408, 521
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 2 cut(s) 199, 265
BstMAI GTCTC 2 cut(s) 326, 341
BstMBI GATC 2 cut(s) 196, 262
BstSCI CCNGG 1 cut(s) 181
BstV1I GCAGC 3 cut(s) 223, 245, 352
BstZ17I GTATAC 1 cut(s) 98
Bsu36I CCTNAGG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 94
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 173, 188
Csp6I GTAC 1 cut(s) 404
CviAII CATG 2 cut(s) 194, 227
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 5 cut(s) 75, 167, 345, 408, 521
DpnI GATC 2 cut(s) 198, 264
DpnII GATC 2 cut(s) 196, 262
DraI TTTAAA 1 cut(s) 220
DrdI GACNNNNNNGTC 1 cut(s) 531
DseDI GACNNNNNNGTC 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 173, 188
Eco57I CTGAAG 1 cut(s) 260
Eco81I CCTNAGG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 188
Esp3I CGTCTC 2 cut(s) 326, 341
FaeI CATG 2 cut(s) 197, 230
FatI CATG 2 cut(s) 193, 226
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 234, 237, 341
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 234, 237, 341
FspBI CTAG 3 cut(s) 6, 101, 108
GluI GCNGC 3 cut(s) 234, 237, 341
HapII CCGG 1 cut(s) 182
Hin1II CATG 2 cut(s) 197, 230
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 2 cut(s) 392, 460
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 139, 279
Hpy188III TCNNGA 2 cut(s) 194, 509
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 259, 335
HpyCH4V TGCA 3 cut(s) 155, 485, 555
HpyF3I CTNAG 5 cut(s) 75, 167, 345, 408, 521
HpySE526I ACGT 2 cut(s) 259, 335
Hsp92II CATG 2 cut(s) 197, 230
Kzo9I GATC 2 cut(s) 196, 262
LguI GCTCTTC 1 cut(s) 206
LpnPI CCDG 7 cut(s) 105, 195, 337, 357, 371, 420, 522
Lsp1109I GCAGC 3 cut(s) 223, 245, 352
LweI GCATC 2 cut(s) 142, 472
MaeI CTAG 3 cut(s) 6, 101, 108
MaeII ACGT 2 cut(s) 259, 335
MalI GATC 2 cut(s) 198, 264
MboI GATC 2 cut(s) 196, 262
MboII GAAGA 3 cut(s) 137, 223, 416
MluCI AATT 4 cut(s) 56, 381, 527, 546
MnlI CCTC 8 cut(s) 49, 97, 174, 179, 201, 403, 429, 483
MseI TTAA 2 cut(s) 219, 249
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 183
NciI CCSGG 1 cut(s) 183
NdeII GATC 2 cut(s) 196, 262
NlaIII CATG 2 cut(s) 197, 230
NlaIV GGNNCC 2 cut(s) 471, 498
PagI TCATGA 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PfeI GAWTC 2 cut(s) 392, 460
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 3 cut(s) 235, 238, 342
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 471, 498
PspPI GGNCC 2 cut(s) 173, 188
PspPPI RGGWCCY 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 219, 249
SatI GCNGC 3 cut(s) 234, 237, 341
Sau3AI GATC 2 cut(s) 196, 262
Sau96I GGNCC 2 cut(s) 173, 188
ScrFI CCNGG 1 cut(s) 183
SfaNI GCATC 2 cut(s) 142, 472
SinI GGWCC 2 cut(s) 173, 188
SmiMI CAYNNNNRTG 1 cut(s) 426
Sse9I AATT 4 cut(s) 56, 381, 527, 546
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 437
SspMI CTAG 3 cut(s) 6, 101, 108
StyD4I CCNGG 1 cut(s) 181
TaiI ACGT 2 cut(s) 262, 338
TaqI TCGA 3 cut(s) 475, 535, 580
TasI AATT 4 cut(s) 56, 381, 527, 546
TfiI GAWTC 2 cut(s) 392, 460
Tru1I TTAA 2 cut(s) 219, 249
Tru9I TTAA 2 cut(s) 219, 249
TseI GCWGC 3 cut(s) 233, 236, 340
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 173, 188
XapI RAATTY 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 97
XspI CTAG 3 cut(s) 6, 101, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.