Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

21793804 .. 21800131

Gene Structure 6328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17890.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3573 bp

ATGTCCTTTCCATTTCTAGAACTTTCCCACTTCACATCTCTTTCTCGACTTCGAAGCACACCACTTCACTTTTCCGTGCTTTCTCCGTCGCCTAGCCAGTGGCCACCACGCACCACCACCAGACGACTCCTGGCGGAGCCACCGCCAGGTCCACCACCACGCCTCGGTCTGGTATTTCCAACACGCCGCTTGTTCCTTTTTTCTTCGCACATCAGCCACCACCACCTATCCCTTCCACCACCTCCACACTCCGTCTCCCCCGGCCACCACCTCCGGGGGTCCACGTCTTCTCTCTGGTCATCACTGACTGGATTGCGTCTGGGTTGTTGCATACGACGGAAGTGCGGGGATACTGTCCATATGGATGCTGAAGGTTCTAGTGGTAAGAGGCCCACTTCCTCGAAAAGGAAACGGAAAACCTCTACAGATGATGCACAGCTAGATTCTCAAACGACTCTATGGGGAGACAAGATTTTGAAGGATCCATTTCCAGGAGGTCCGGAGGATCCGAGGGTGCTTAGGAGTTTCCCAAGTCATGTAGCTGCTGCTATTTGGCATAATGTGGAACGTGAACCCCTTAGGGTGTTCAATCACACTTGTAAGCTTCAAGCATGGAAATTTGACCCATCCGTTTCTAACTGCAAGTTTTGGAGATATATTGATAGCTCCGGGTTGCGACCGCTTATTGATTGCTCATACAGGACATCTAATAAAATTGTTGTATCCGCATTCTGTGAGAGATGGCAACCCGAGACAAATACTTTCCATCTACCATTTGGTGAGTTGACAATCACATTAGATGATGTGTCCAACATACTAGGAATTCCAGTGGATGGTAACTCTGTATCTGTTTGCGATGATGAATTGGACAACTCCGTCCTAGCTAGTCAGTGCCATGATTTATTTGTCACTGCATTAGGAGTTACCGATGATGAGGCACGAGCTGAGATGGGTCGCTTCAGTGGTAGTGCGGTTACACTTGAATGGTTAAGGCAGAGATTTCACAAAGTATCGGATGATGAGTCTCCTGAATTTATAGAGCGTGCAGCAAGGGGTTACCTATTATATCTATTAGGTTGCACACTCTTTGCGGATAAAACAGGGAATAGGATATCTCTCATTTACTTGCATTTTCTACGGGACTTGAATAGTGTTGGGGGGTATGCATGGGGCACAGCAGGATTAGCGTTCTTGTACCGGCAATTAGGACTTGCTTCTAGACTTGGATGTAGGCAAATTTCTGGATATTTGACTTTACTAGAGGCATGGATCTACGAGCATTTTCACAAGATTGCTACTCCCCATGTTAACGTTCATTACTCAGAGGATCAGCCGCGTGTGCGCCGTTGGACACCACGAAGGGATGCAGGGTTATCATTACAACATTTGCAGGCAATGCGACAACGACTTGATCTTATGCATGATACTGAGGTTGTCTGGGATCCATATCATGGTCAGAGAGGACATCATTCTTTACCAAAGATGACATTCTATACTGGTCTCCTCAAGTGTGTGGATATTGTGGAGCCTTATTATGTTGATAGGGTTCTACGACAGTTTAGCCTTGTTCAGACAATTCCCCAAATGACATATACCCCTTCTCGAGTTCGACGGAGCACTGATACAAAAATGTACAAGGTTGTGCATACGTACTTTGATGGGATTTGGCAAAGGCGTGAATATCACCTATTGGGACCAGAAAACCTTAGCAGGGAGGTTATAGCCCCATCAGATTGTGATCCTGGGTACCACACATGGTATCGTAAAATCACCCATCCATACGTGCATCACCCTGATCGTAGGTCTACTGCCATACGGCCACATGACATAAATGATCCACATCAGCGCATAGCACGTCTTCTAGCCATCATGGAGCCTATTTCACATTCTAATCTTCATTGTGCTTGTGGATTTTACGAGGCATTTGAGCAAGTCTGGTCAATTTTGCAAGGGTCTGAGGCAGAAATTGCAGCAACAGCAGCAGCTGCTCCATCTGCAACTCAAGTTGTTGCAGAACCAGCAGCAGCTCAAGCAGAACCAGCAACACCTGTTCCATCTGCATCTACAACCCAAAACGTTGCAGAACCAGCAGCACCTGTTTCATCCGCATCTGCAACTCAAGACGTTGAAGAACCAGCAGCAGCTCAAGATGTTGCAGAACCAGCAACACCTGTTCCATCGACATCTGCAACTCAAGACGTTGCAGAACCACCAGCAGCTCAAGACGTTGCAGAACCAGAAGCTGCTCAAGACGTTGCAGAACGAGTAGCACTGCCGCTGGTCTTCAGTTCATCGTCTTCTTTTGTCAAAAACTCTGAATCCAAAGACAACCCATTGTCCTTGCCGCCACCACCCGAAACCCCGATTTTCTGGCCGCCCGACGGAACGCTCAGCCTTGAATGGGTTCGGAACCTAATGTCCAGTTTCGATTGGGCTTCTAGAAATCTTGAACCGAACCAATTTCCGAACGTATTTCCTAAGGAGGTTTTTGATAGCTTGGTCCTATGCGCCTTCGATGTCCTCCATAAAGAGGCAAATTGCATTGCCGTCGACCGGTTAGGTCTGGAATCCACTGTTGTCGTTGTTGGAGACATTCACGGTCAGCTGCACGATCTCCTTTTCCTTCTAAATGATGCTGGATTTCCTTCAGAAAATCGATTATACGTCTTCAATGGCGATTATGTTGATAGAGGGGCTTGGGGGATCGAAACCTTCTTGATTTTATTGGCTTGGAAGGTGTTTTTGCCCAAGAGCGTTTATCTTCTTAGAGGAAATCACGAATCCAAATACTGCACTTCCGTTTATGGCTTTGAAAAGGAAGTGTTGACAAAGTATGGAGACAAAGGGAAGGACGTGTACCAAAAATGTCTTGAGTGCTTTAAGCGTCTCCCTTTGACATCTATTATTGGGAAATATGTATACACTGCTCATGGTGGGCTGTTTCGCAGCATGTCTGCATACCCCAAGAGATCAAAGGGAAAGAAGAGGAGGAAAATATCTTTCGTTCCTGAACTGAGCAGTAAATTGTCTCTTGGCACGTTTGAAGAATTGAAGAAGGCTCAAAGATCGGTTCTTAATCCTCCGTGGATGGGTTCGAACTTGATTCCTGGTGACGTCCTATGGTCAGATCCCTCCATGGATCCCGGTCTTTCTTGGAATGAAGAGAGAGGCATTGGTTTGCTTTGGGGCCCTGACTGCACTGAGGAGTTTCTCAAGAAGTTTCAACTCAAGTTGATTATTAGATCGCATGAAGGCCCTGATGCACGGGACAAGAGGCCAGGTCTTGGTGGAATGGAGAATGGGTTCACCATAGATCACACTGTGGAGTCAGGGAAGCTCATTACTTTGTTTAGTGCTCCAGACTACCCACAATTTCAGGCAACAGAAGATAGGTACAGAAATAAAGGAGCTTACATCGTTCTGGAACCCCCTAATTTTGACGATCCTTTTATCCATAGCTTTGAAGCAATCACTCCAAGACCTCAGGCAAAACCCTTTTATGACTTTGAAGAAGTGGCTGATTCTGATCAAGAGTTGGACTTTGCATCGCCATCGATGGAGACTAGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

1191

Amino Acids

133.64

Weight (kDa)

6.28

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	875
AatII	GACGTC	1 cut(s)	3117
Acc65I	GGTACC	1 cut(s)	1746
AccB1I	GGYRCC	1 cut(s)	1746
AccB7I	CCANNNNNTGG	3 cut(s)	833, 1451, 3284
AccI	GTMKAC	3 cut(s)	1805, 2550, 2919
AccII	CGCG	1 cut(s)	1336
AccIII	TCCGGA	1 cut(s)	499
AclI	AACGTT	2 cut(s)	1311, 2076
AcoI	YGGCCR	4 cut(s)	101, 262, 1817, 2372
AcsI	RAATTY	4 cut(s)	617, 822, 1031, 1236
AcuI	CTGAAG	4 cut(s)	390, 943, 2269, 2631
AcyI	GRCGYC	1 cut(s)	3114
AdeI	CACNNNGTG	1 cut(s)	3322
AfaI	GTAC	6 cut(s)	1196, 1634, 1652, 1748, 2858, 3395
AflIII	ACRYGT	1 cut(s)	2853
AgeI	ACCGGT	1 cut(s)	2553
AjiI	CACGTC	3 cut(s)	285, 1856, 2854
AjnI	CCWGG	6 cut(s)	129, 145, 490, 1741, 3106, 3277
AloI	GAACNNNNNNTCC	4 cut(s)	2402, 2434, 3287, 3319
Alw21I	GWGCWC	2 cut(s)	1619, 3358
AlwNI	CAGNNNCTG	3 cut(s)	1985, 2096, 2243
Ama87I	CYCGRG	2 cut(s)	749, 1602
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	8 cut(s)	101, 262, 389, 1817, 2372, 3187, 3253, 3275
ApaI	GGGCCC	1 cut(s)	3191
ApoI	RAATTY	4 cut(s)	617, 822, 1031, 1236
AsiGI	ACCGGT	1 cut(s)	2553
Asp700I	GAANNNNTTC	2 cut(s)	2403, 3302
Asp718I	GGTACC	1 cut(s)	1746
AspLEI	GCGC	3 cut(s)	1344, 1848, 2510
AspS9I	GGNCC	9 cut(s)	149, 279, 390, 497, 1694, 2500, 3187, 3188, 3254
AsuC2I	CCSGG	4 cut(s)	261, 275, 670, 3144
AsuHPI	GGTGA	6 cut(s)	791, 1676, 1762, 1781, 3122, 3298
AsuII	TTCGAA	2 cut(s)	52, 3095
AvaI	CYCGRG	2 cut(s)	749, 1602
AvaII	GGWCC	5 cut(s)	149, 279, 497, 1694, 2500
AxyI	CCTNAGG	3 cut(s)	578, 2478, 3483
BaeGI	GKGCMC	2 cut(s)	1175, 3191
BaeI	ACNNNNGTAYC	2 cut(s)	1416, 1449
BalI	TGGCCA	1 cut(s)	103
BamHI	GGATCC	4 cut(s)	481, 505, 1441, 3139
BanI	GGYRCC	1 cut(s)	1746
BanII	GRGCYC	1 cut(s)	3191
BarI	GAAGNNNNNNTAC	2 cut(s)	2840, 2872
BauI	CACGAG	1 cut(s)	939
BbsI	GAAGAC	5 cut(s)	279, 1850, 2275, 2289, 2659
Bbv12I	GWGCWC	2 cut(s)	1619, 3358
BceAI	ACGGC	3 cut(s)	1329, 1832, 2531
BcgI	CGANNNNNNTGC	6 cut(s)	324, 358, 2530, 2564, 3534, 3568
BciT130I	CCWGG	6 cut(s)	131, 147, 492, 1743, 3108, 3279
BciVI	GTATCC	2 cut(s)	343, 733
BclI	TGATCA	1 cut(s)	3526
BcnI	CCSGG	4 cut(s)	261, 275, 670, 3144
BfmI	CTRYAG	1 cut(s)	423
BfuI	GTATCC	2 cut(s)	343, 733
BlpI	GCTNAGC	1 cut(s)	2390
Bme18I	GGWCC	5 cut(s)	149, 279, 497, 1694, 2500
BmeT110I	CYCGRG	2 cut(s)	749, 1602
BmgBI	CACGTC	3 cut(s)	285, 1856, 2854
BmgT120I	GGNCC	9 cut(s)	149, 279, 390, 497, 1694, 2500, 3187, 3188, 3254
BmsI	GCATC	9 cut(s)	355, 421, 1354, 1795, 2069, 2117, 2623, 3250, 3554
BpiI	GAAGAC	5 cut(s)	279, 1850, 2275, 2289, 2659
BpmI	CTGGAG	1 cut(s)	3342
Bpu10I	CCTNAGC	2 cut(s)	518, 1706
Bpu1102I	GCTNAGC	1 cut(s)	2390
Bpu14I	TTCGAA	2 cut(s)	52, 3095
BpuMI	CCSGG	4 cut(s)	261, 275, 670, 3144
Bsa29I	ATCGAT	2 cut(s)	2656, 3554
BsaAI	YACGTR	2 cut(s)	1650, 1783
BsaBI	GATNNNNATC	4 cut(s)	1446, 1737, 1839, 3525
BsaHI	GRCGYC	1 cut(s)	3114
BsaI	GGTCTC	1 cut(s)	1505
BsaJI	CCNNGG	7 cut(s)	163, 259, 274, 509, 1742, 3083, 3135
BsaWI	WCCGGW	2 cut(s)	499, 2553
BsaXI	ACNNNNNCTCC	4 cut(s)	239, 269, 3287, 3317
Bse118I	RCCGGY	2 cut(s)	1197, 2553
Bse1I	ACTGG	5 cut(s)	97, 313, 827, 1501, 2421
Bse21I	CCTNAGG	3 cut(s)	578, 2478, 3483
Bse3DI	GCAATG	2 cut(s)	1401, 2541
Bse8I	GATNNNNATC	4 cut(s)	1446, 1737, 1839, 3525
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	6 cut(s)	131, 147, 492, 1743, 3108, 3279
BseCI	ATCGAT	2 cut(s)	2656, 3554
BseDI	CCNNGG	7 cut(s)	163, 259, 274, 509, 1742, 3083, 3135
BseGI	GGATG	9 cut(s)	370, 626, 838, 1021, 1232, 1369, 1774, 2102, 3093
BseJI	GATNNNNATC	4 cut(s)	1446, 1737, 1839, 3525
BseMI	GCAATG	2 cut(s)	1401, 2541
BseMII	CTCAG	8 cut(s)	936, 1335, 1419, 1947, 2404, 3005, 3192, 3497
BseNI	ACTGG	5 cut(s)	97, 313, 827, 1501, 2421
BseRI	GAGGAG	3 cut(s)	1493, 3001, 3218
BseSI	GKGCMC	2 cut(s)	1175, 3191
BsgI	GTGCAG	4 cut(s)	1065, 2591, 2776, 3181
Bsh1236I	CGCG	1 cut(s)	1336
Bsh1285I	CGRYCG	2 cut(s)	680, 2554
BshFI	GGCC	8 cut(s)	103, 264, 391, 1819, 2374, 3189, 3255, 3277
BshNI	GGYRCC	1 cut(s)	1746
BshTI	ACCGGT	1 cut(s)	2553
BshVI	ATCGAT	2 cut(s)	2656, 3554
BsiEI	CGRYCG	2 cut(s)	680, 2554
BsiHKAI	GWGCWC	2 cut(s)	1619, 3358
BsiHKCI	CYCGRG	2 cut(s)	749, 1602
BsiSI	CCGG	7 cut(s)	261, 274, 500, 669, 1198, 2554, 3144
BslFI	GGGAC	3 cut(s)	1154, 1707, 3281
BsmBI	CGTCTC	2 cut(s)	259, 2891
BsmFI	GGGAC	3 cut(s)	1154, 1707, 3281
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	8 cut(s)	103, 264, 391, 1819, 2374, 3189, 3255, 3277
Bso31I	GGTCTC	1 cut(s)	1505
BsoBI	CYCGRG	2 cut(s)	749, 1602
Bsp119I	TTCGAA	2 cut(s)	52, 3095
Bsp120I	GGGCCC	1 cut(s)	3187
Bsp1286I	GDGCHC	4 cut(s)	1175, 1619, 3191, 3358
Bsp13I	TCCGGA	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	1632
Bsp1720I	GCTNAGC	1 cut(s)	2390
Bsp19I	CCATGG	1 cut(s)	3135
BspANI	GGCC	8 cut(s)	103, 264, 391, 1819, 2374, 3189, 3255, 3277
BspCNI	CTCAG	8 cut(s)	937, 1334, 1420, 1948, 2403, 3006, 3193, 3496
BspDI	ATCGAT	2 cut(s)	2656, 3554
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	1336
BspT104I	TTCGAA	2 cut(s)	52, 3095
BspT107I	GGYRCC	1 cut(s)	1746
BspTNI	GGTCTC	1 cut(s)	1505
BsrDI	GCAATG	2 cut(s)	1401, 2541
BsrFI	RCCGGY	2 cut(s)	1197, 2553
BsrGI	TGTACA	1 cut(s)	1632
BsrI	ACTGG	5 cut(s)	97, 313, 827, 1501, 2421
BssAI	RCCGGY	2 cut(s)	1197, 2553
BssECI	CCNNGG	7 cut(s)	163, 259, 274, 509, 1742, 3083, 3135
BssNAI	GTATAC	1 cut(s)	2920
BssNI	GRCGYC	1 cut(s)	3114
BssSI	CACGAG	1 cut(s)	939
BssT1I	CCWWGG	1 cut(s)	3135
Bst1107I	GTATAC	1 cut(s)	2920
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	6 cut(s)	131, 147, 492, 1743, 3108, 3279
Bst4CI	ACNGT	5 cut(s)	355, 1557, 2575, 2600, 3322
Bst6I	CTCTTC	2 cut(s)	2978, 3156
BstACI	GRCGYC	1 cut(s)	3114
BstAPI	GCANNNNNTGC	3 cut(s)	1396, 1967, 1985
BstAUI	TGTACA	1 cut(s)	1632
BstBAI	YACGTR	2 cut(s)	1650, 1783
BstBI	TTCGAA	2 cut(s)	52, 3095
BstC8I	GCNNGC	2 cut(s)	1044, 1392
BstDSI	CCRYGG	2 cut(s)	3083, 3135
BstEII	GGTNACC	1 cut(s)	1055
BstENI	CCTNNNNNAGG	1 cut(s)	403
BstF5I	GGATG	9 cut(s)	370, 626, 838, 1021, 1232, 1369, 1774, 2102, 3093
BstFNI	CGCG	1 cut(s)	1336
BstHHI	GCGC	3 cut(s)	1344, 1848, 2510
BstMCI	CGRYCG	2 cut(s)	680, 2554
BstNI	CCWGG	6 cut(s)	131, 147, 492, 1743, 3108, 3279
BstNSI	RCATGY	1 cut(s)	2953
BstPI	GGTNACC	1 cut(s)	1055
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	2 cut(s)	1175, 3191
BstSNI	TACGTA	1 cut(s)	1650
BstUI	CGCG	1 cut(s)	1336
BstV2I	GAAGAC	5 cut(s)	279, 1850, 2275, 2289, 2659
BstX2I	RGATCY	6 cut(s)	481, 505, 1269, 1441, 3127, 3139
BstYI	RGATCY	6 cut(s)	481, 505, 1269, 1441, 3127, 3139
BstZ17I	GTATAC	1 cut(s)	2920
Bsu15I	ATCGAT	2 cut(s)	2656, 3554
Bsu36I	CCTNAGG	3 cut(s)	578, 2478, 3483
BsuI	GTATCC	2 cut(s)	343, 733
BsuRI	GGCC	8 cut(s)	103, 264, 391, 1819, 2374, 3189, 3255, 3277
BsuTUI	ATCGAT	2 cut(s)	2656, 3554
BtgI	CCRYGG	2 cut(s)	3083, 3135
BtgZI	GCGATG	2 cut(s)	870, 3531
BtrI	CACGTC	3 cut(s)	285, 1856, 2854
BtsCI	GGATG	9 cut(s)	370, 626, 838, 1021, 1232, 1369, 1774, 2102, 3093
BtsI	GCAGTG	3 cut(s)	909, 2270, 2922
Cac8I	GCNNGC	2 cut(s)	1044, 1392
CaiI	CAGNNNCTG	3 cut(s)	1985, 2096, 2243
CfoI	GCGC	3 cut(s)	1344, 1848, 2510
Cfr10I	RCCGGY	2 cut(s)	1197, 2553
Cfr13I	GGNCC	9 cut(s)	149, 279, 390, 497, 1694, 2500, 3187, 3188, 3254
ClaI	ATCGAT	2 cut(s)	2656, 3554
CseI	GACGC	2 cut(s)	305, 2873
Csp6I	GTAC	6 cut(s)	1195, 1633, 1651, 1747, 2857, 3394
CspAI	ACCGGT	1 cut(s)	2553
CviQI	GTAC	6 cut(s)	1195, 1633, 1651, 1747, 2857, 3394
DraIII	CACNNNGTG	1 cut(s)	3322
DrdI	GACNNNNNNGTC	1 cut(s)	875
DseDI	GACNNNNNNGTC	1 cut(s)	875
EaeI	YGGCCR	4 cut(s)	101, 262, 1817, 2372
Eam1104I	CTCTTC	2 cut(s)	2978, 3156
EarI	CTCTTC	2 cut(s)	2978, 3156
EciI	GGCGGA	1 cut(s)	149
Eco105I	TACGTA	1 cut(s)	1650
Eco130I	CCWWGG	1 cut(s)	3135
Eco24I	GRGCYC	1 cut(s)	3191
Eco31I	GGTCTC	1 cut(s)	1505
Eco32I	GATATC	1 cut(s)	1113
Eco47I	GGWCC	5 cut(s)	149, 279, 497, 1694, 2500
Eco57I	CTGAAG	4 cut(s)	390, 943, 2269, 2631
Eco81I	CCTNAGG	3 cut(s)	578, 2478, 3483
Eco88I	CYCGRG	2 cut(s)	749, 1602
Eco91I	GGTNACC	1 cut(s)	1055
EcoNI	CCTNNNNNAGG	1 cut(s)	403
EcoO109I	RGGNCCY	3 cut(s)	3187, 3188, 3254
EcoO65I	GGTNACC	1 cut(s)	1055
EcoRI	GAATTC	1 cut(s)	822
EcoRII	CCWGG	6 cut(s)	129, 145, 490, 1741, 3106, 3277
EcoRV	GATATC	1 cut(s)	1113
EcoT14I	CCWWGG	1 cut(s)	3135
EcoT22I	ATGCAT	2 cut(s)	1168, 1422
EcoT38I	GRGCYC	1 cut(s)	3191
ErhI	CCWWGG	1 cut(s)	3135
Esp3I	CGTCTC	2 cut(s)	259, 2891
FaqI	GGGAC	3 cut(s)	1154, 1707, 3281
FauI	CCCGC	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	3526
FblI	GTMKAC	3 cut(s)	1805, 2550, 2919
FokI	GGATG	9 cut(s)	377, 613, 845, 1028, 1239, 1376, 1761, 2089, 3100
FriOI	GRGCYC	1 cut(s)	3191
GlaI	GCGC	3 cut(s)	1343, 1847, 2509
GsuI	CTGGAG	1 cut(s)	3342
HaeIII	GGCC	8 cut(s)	103, 264, 391, 1819, 2374, 3189, 3255, 3277
HapII	CCGG	7 cut(s)	261, 274, 500, 669, 1198, 2554, 3144
HgaI	GACGC	2 cut(s)	305, 2873
HhaI	GCGC	3 cut(s)	1344, 1848, 2510
Hin1I	GRCGYC	1 cut(s)	3114
Hin6I	GCGC	3 cut(s)	1342, 1846, 2508
HinP1I	GCGC	3 cut(s)	1342, 1846, 2508
HincII	GTYRAC	4 cut(s)	786, 1309, 2551, 2826
HindII	GTYRAC	4 cut(s)	786, 1309, 2551, 2826
HindIII	AAGCTT	1 cut(s)	602
HpaI	GTTAAC	1 cut(s)	1309
HpaII	CCGG	7 cut(s)	261, 274, 500, 669, 1198, 2554, 3144
HphI	GGTGA	6 cut(s)	791, 1676, 1762, 1781, 3122, 3298
Hpy99I	CGWCG	5 cut(s)	91, 339, 1614, 2384, 2552
HpyCH4III	ACNGT	5 cut(s)	355, 1557, 2575, 2600, 3322
Hsp92I	GRCGYC	1 cut(s)	3114
HspAI	GCGC	3 cut(s)	1342, 1846, 2508
Kpn2I	TCCGGA	1 cut(s)	499
KpnI	GGTACC	1 cut(s)	1750
Ksp22I	TGATCA	1 cut(s)	3526
KspAI	GTTAAC	1 cut(s)	1309
LmnI	GCTCC	8 cut(s)	136, 671, 1525, 1614, 1873, 1993, 3361, 3407
LweI	GCATC	9 cut(s)	355, 421, 1354, 1795, 2069, 2117, 2623, 3250, 3554
MaeIII	GTNAC	6 cut(s)	836, 907, 922, 973, 1055, 3110
MflI	RGATCY	6 cut(s)	481, 505, 1269, 1441, 3127, 3139
MhlI	GDGCHC	4 cut(s)	1175, 1619, 3191, 3358
MlsI	TGGCCA	1 cut(s)	103
MluNI	TGGCCA	1 cut(s)	103
MlyI	GAGTC	4 cut(s)	120, 448, 1031, 3335
MmeI	TCCRAC	5 cut(s)	203, 834, 1328, 2566, 3516
Mox20I	TGGCCA	1 cut(s)	103
Mph1103I	ATGCAT	2 cut(s)	1168, 1422
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	2 cut(s)	2403, 3302
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	4 cut(s)	989, 1308, 2880, 3075
MslI	CAYNNNNRTG	2 cut(s)	363, 982
Msp20I	TGGCCA	1 cut(s)	103
MspA1I	CMGCKG	3 cut(s)	1985, 2278, 2605
MspI	CCGG	7 cut(s)	261, 274, 500, 669, 1198, 2554, 3144
Mva1269I	GAATGC	1 cut(s)	728
MvaI	CCWGG	6 cut(s)	131, 147, 492, 1743, 3108, 3279
MvnI	CGCG	1 cut(s)	1336
NciI	CCSGG	4 cut(s)	261, 275, 670, 3144
NcoI	CCATGG	1 cut(s)	3135
NdeI	CATATG	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	907, 3110
NsiI	ATGCAT	2 cut(s)	1168, 1422
NspI	RCATGY	1 cut(s)	2953
NspV	TTCGAA	2 cut(s)	52, 3095
PaeR7I	CTCGAG	1 cut(s)	1602
PctI	GAATGC	1 cut(s)	728
PdmI	GAANNNNTTC	2 cut(s)	2403, 3302
PfeI	GAWTC	6 cut(s)	443, 2318, 2567, 2780, 3103, 3521
PflMI	CCANNNNNTGG	3 cut(s)	833, 1451, 3284
PfoI	TCCNGGA	1 cut(s)	490
PinAI	ACCGGT	1 cut(s)	2553
PleI	GAGTC	4 cut(s)	120, 448, 1030, 3334
PpsI	GAGTC	4 cut(s)	120, 448, 1030, 3334
Ppu21I	YACGTR	2 cut(s)	1650, 1783
Psp1406I	AACGTT	2 cut(s)	1311, 2076
Psp6I	CCWGG	6 cut(s)	129, 145, 490, 1741, 3106, 3277
PspEI	GGTNACC	1 cut(s)	1055
PspGI	CCWGG	6 cut(s)	129, 145, 490, 1741, 3106, 3277
PspOMI	GGGCCC	1 cut(s)	3187
PspPI	GGNCC	9 cut(s)	149, 279, 390, 497, 1694, 2500, 3187, 3188, 3254
PstNI	CAGNNNCTG	3 cut(s)	1985, 2096, 2243
PsuI	RGATCY	6 cut(s)	481, 505, 1269, 1441, 3127, 3139
PvuII	CAGCTG	2 cut(s)	1985, 2605
RsaI	GTAC	6 cut(s)	1196, 1634, 1652, 1748, 2858, 3395
RsaNI	GTAC	6 cut(s)	1195, 1633, 1651, 1747, 2857, 3394
RseI	CAYNNNNRTG	2 cut(s)	363, 982
SalI	GTCGAC	1 cut(s)	2549
SaqAI	TTAA	4 cut(s)	989, 1308, 2880, 3075
Sau96I	GGNCC	9 cut(s)	149, 279, 390, 497, 1694, 2500, 3187, 3188, 3254
SchI	GAGTC	4 cut(s)	120, 448, 1031, 3335
SduI	GDGCHC	4 cut(s)	1175, 1619, 3191, 3358
SfaNI	GCATC	9 cut(s)	355, 421, 1354, 1795, 2069, 2117, 2623, 3250, 3554
SfcI	CTRYAG	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	1602
SfuI	TTCGAA	2 cut(s)	52, 3095
SinI	GGWCC	5 cut(s)	149, 279, 497, 1694, 2500
SlaI	CTCGAG	1 cut(s)	1602
SmiMI	CAYNNNNRTG	2 cut(s)	363, 982
SnaBI	TACGTA	1 cut(s)	1650
StyI	CCWWGG	1 cut(s)	3135
TaaI	ACNGT	5 cut(s)	355, 1557, 2575, 2600, 3322
TaqII	GACCGA	1 cut(s)	155
TatI	WGTACW	1 cut(s)	1632
TauI	GCSGC	5 cut(s)	189, 1336, 2278, 2347, 2377
TfiI	GAWTC	6 cut(s)	443, 2318, 2567, 2780, 3103, 3521
Tru1I	TTAA	4 cut(s)	989, 1308, 2880, 3075
Tru9I	TTAA	4 cut(s)	989, 1308, 2880, 3075
TseFI	GTSAC	2 cut(s)	907, 3110
Tsp45I	GTSAC	2 cut(s)	907, 3110
TspDTI	ATGAA	7 cut(s)	876, 1304, 1886, 2091, 2280, 3174, 3264
Van91I	CCANNNNNTGG	3 cut(s)	833, 1451, 3284
VpaK11BI	GGWCC	5 cut(s)	149, 279, 497, 1694, 2500
XagI	CCTNNNNNAGG	1 cut(s)	403
XapI	RAATTY	4 cut(s)	617, 822, 1031, 1236
XbaI	TCTAGA	3 cut(s)	16, 1217, 2438
XceI	RCATGY	1 cut(s)	2953
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 773
XhoI	CTCGAG	1 cut(s)	1602
XmiI	GTMKAC	3 cut(s)	1805, 2550, 2919
XmnI	GAANNNNTTC	2 cut(s)	2403, 3302
ZraI	GACGTC	1 cut(s)	3115
Zsp2I	ATGCAT	2 cut(s)	1168, 1422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.