Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

43015264 .. 43018382

Gene Structure 3119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG353700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATGAATAAACAAATGTTCCATCATTTCTACTTGTGGCCACAGTTTGGCTCTATTTTGAGTATGGCTAGAGGTTCTAAACACCACGATTGCCCCATAACCTCAAAGACAAAAAGAAAATTTTGCTCTCAACCTTCTCAGTCAGTAGTGGACGATGGTATACTAGAGGCTGGGGTTGATACTGGGGAAGAACAAGCTTCTGAACCCTTTACAGATGCAGATGAATCTCTAAGTGGTCCATTTCCGGGAAGTCCTCATGATCCATCGGTGAAGAGCTTTAAAAGTCATGCAGCAGCTGCTATATGGTTTAATAAGGTTGATTCCATATCTGTATCTGAGGGTGTGCGGTTAGACAAAACTTATTATGCATCTTTACTGTCATCTACACTAGGAGTTACTATAGATGAGGCAAAGAATGAAATGAGTCGATATGGTGGAAATAGGAATGAGCCACGAGTGAATTGTTGGGAACCTCAAAAATATGCAAGTTTGTCACTTGTTTACGTGCAAGCTCTTCGCCAACAGCTTGATCATATGCAAGCACACGAGGTCATATGGGATCCATATCGTGGTCATAGGGATGCTCATCCATTATTGGAAATCACATTTTACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

205

Amino Acids

23.12

Weight (kDa)

6.04

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	47, 569
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	346
AclWI	GGATC	3 cut(s)	254, 554, 567
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	119
AfiI	CCNNNNNNNGG	3 cut(s)	47, 245, 569
AluBI	AGCT	5 cut(s)	197, 276, 296, 512, 526
AluI	AGCT	5 cut(s)	197, 276, 296, 512, 526
AlwI	GGATC	3 cut(s)	254, 554, 567
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	3 cut(s)	290, 293, 296
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	559
BauI	CACGAG	2 cut(s)	453, 545
BbvI	GCAGC	3 cut(s)	283, 302, 305
BccI	CCATC	3 cut(s)	30, 149, 271
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	3 cut(s)	69, 164, 389
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	3 cut(s)	291, 294, 297
BlsI	GCNGC	3 cut(s)	292, 295, 298
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	471, 561
BmrFI	CCNGG	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	3 cut(s)	205, 377, 571
BmuI	ACTGGG	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	505
BsaBI	GATNNNNATC	2 cut(s)	564, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 245, 569
Bse1I	ACTGG	1 cut(s)	187
Bse8I	GATNNNNATC	2 cut(s)	564, 585
BseGI	GGATG	2 cut(s)	586, 586
BseJI	GATNNNNATC	2 cut(s)	564, 585
BseLI	CCNNNNNNNGG	3 cut(s)	47, 245, 569
BseMII	CTCAG	2 cut(s)	152, 327
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	3 cut(s)	283, 302, 305
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	47, 245, 569
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	259, 529, 559
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	2 cut(s)	151, 328
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	471, 561
BspPI	GGATC	3 cut(s)	254, 554, 567
BspQI	GCTCTTC	2 cut(s)	266, 519
BsrI	ACTGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	259, 529, 559
BssNAI	GTATAC	1 cut(s)	161
BssSI	CACGAG	2 cut(s)	453, 545
Bst1107I	GTATAC	1 cut(s)	161
Bst2BI	CACGAG	2 cut(s)	453, 545
Bst4CI	ACNGT	2 cut(s)	45, 378
Bst6I	CTCTTC	2 cut(s)	266, 519
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	510, 540
BstDEI	CTNAG	3 cut(s)	138, 230, 336
BstF5I	GGATG	2 cut(s)	586, 586
BstKTI	GATC	3 cut(s)	262, 532, 562
BstMBI	GATC	3 cut(s)	259, 529, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	283, 302, 305
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BstZ17I	GTATAC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	586, 586
Cac8I	GCNNGC	2 cut(s)	510, 540
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	3 cut(s)	257, 287, 615
DdeI	CTNAG	3 cut(s)	138, 230, 336
DpnI	GATC	3 cut(s)	261, 531, 561
DpnII	GATC	3 cut(s)	259, 529, 559
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	266, 519
EarI	CTCTTC	2 cut(s)	266, 519
Eco47I	GGWCC	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	370
FaeI	CATG	3 cut(s)	260, 290, 618
FatI	CATG	3 cut(s)	256, 286, 614
FauNDI	CATATG	2 cut(s)	534, 554
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	291, 294, 297
FokI	GGATG	2 cut(s)	573, 593
Fsp4HI	GCNGC	3 cut(s)	291, 294, 297
FspBI	CTAG	3 cut(s)	69, 164, 389
GluI	GCNGC	3 cut(s)	291, 294, 297
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	3 cut(s)	260, 290, 618
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	3 cut(s)	224, 320, 424
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	3 cut(s)	151, 161, 502
Hpy188I	TCNGA	2 cut(s)	202, 337
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	3 cut(s)	151, 161, 502
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	45, 378
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	6 cut(s)	218, 290, 368, 485, 508, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	3 cut(s)	138, 230, 336
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	3 cut(s)	260, 290, 618
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	259, 529, 559
LguI	GCTCTTC	2 cut(s)	266, 519
LpnPI	CCDG	3 cut(s)	156, 168, 258
Lsp1109I	GCAGC	3 cut(s)	283, 302, 305
LweI	GCATC	3 cut(s)	205, 377, 571
MaeI	CTAG	3 cut(s)	69, 164, 389
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	394, 492
MalI	GATC	3 cut(s)	261, 531, 561
MboI	GATC	3 cut(s)	259, 529, 559
MboII	GAAGA	3 cut(s)	200, 283, 506
MflI	RGATCY	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	2 cut(s)	119, 460
MluNI	TGGCCA	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	433
MnlI	CCTC	8 cut(s)	65, 112, 160, 264, 331, 400, 483, 541
Mox20I	TGGCCA	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	2 cut(s)	279, 309
MslI	CAYNNNNRTG	1 cut(s)	579
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	2 cut(s)	534, 554
NdeII	GATC	3 cut(s)	259, 529, 559
NlaIII	CATG	3 cut(s)	260, 290, 618
NlaIV	GGNNCC	2 cut(s)	471, 561
NmuCI	GTSAC	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	370
PagI	TCATGA	1 cut(s)	256
PciSI	GCTCTTC	2 cut(s)	266, 519
PfeI	GAWTC	2 cut(s)	224, 320
PflMI	CCANNNNNTGG	2 cut(s)	47, 569
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	292, 295, 298
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Ppu21I	YACGTR	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	471, 561
PspPI	GGNCC	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	559
PvuII	CAGCTG	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	579
SapI	GCTCTTC	2 cut(s)	266, 519
SaqAI	TTAA	2 cut(s)	279, 309
SatI	GCNGC	3 cut(s)	291, 294, 297
Sau3AI	GATC	3 cut(s)	259, 529, 559
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	246
SfaNI	GCATC	3 cut(s)	205, 377, 571
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	579
Sse9I	AATT	2 cut(s)	119, 460
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	3 cut(s)	69, 164, 389
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	45, 378
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	427
TasI	AATT	2 cut(s)	119, 460
TfiI	GAWTC	2 cut(s)	224, 320
Tru1I	TTAA	2 cut(s)	279, 309
Tru9I	TTAA	2 cut(s)	279, 309
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	3 cut(s)	290, 293, 296
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	3 cut(s)	20, 237, 432
Van91I	CCANNNNNTGG	2 cut(s)	47, 569
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	69, 164, 389
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.