Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

43352426 .. 43354888

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG356400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTCCATCATTTCTACTTGTGGCCACAGTTTGGCTCTGTTTTGAGTATGGCTAGAGGTTCTAAACACCACGATTGCCCCATAACCTCAAAGACAAAAAGAAAATTTTGTTCTCAACCTTCTCAGTTAGTAGTGGACGATGGTATAATAGAGGCTGGGGTTGATACTGGGGAAGAACAAGCTTCTGAACCCTTTACAGATGCAGATGAACCTCTAAGTGGTCCATTTCCGGGAAGTCCTCATGATCCATCGATGAAGAGCTTTAAAAGTCATGCAGCAGCTGCTATATGGTTTAATAAGGAATGTGATCCGTTGAAACTTCAGAACCATTCATATAAGCTCACACAATGGGTATTTGATGAACATGTTACTAACCATAAGTTTTGGAGTTACATTGATTGGTCTAGGTTAAGGCCATTAGGTGATTCCATATCTGTATCTGAGGGTGTGCGGTTATACAAAACTTATTATGCATCTTTACTGTCATCTACACTAGGAGTTACTATAGATGAGGCAAAGAATGAAATGAGTCGATATGGTGGAATGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

183

Amino Acids

20.64

Weight (kDa)

6.12

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	2 cut(s)	239, 302
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	305
AfiI	CCNNNNNNNGG	3 cut(s)	32, 218, 230
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	4 cut(s)	182, 261, 281, 340
AluI	AGCT	4 cut(s)	182, 261, 281, 340
AlwI	GGATC	2 cut(s)	239, 302
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	23, 413
ApeKI	GCWGC	3 cut(s)	275, 278, 281
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	268, 287, 290
BccI	CCATC	3 cut(s)	15, 134, 256
BcnI	CCSGG	1 cut(s)	231
BfaI	CTAG	3 cut(s)	54, 405, 494
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	3 cut(s)	276, 279, 282
BlsI	GCNGC	3 cut(s)	277, 280, 283
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	190, 482
BmuI	ACTGGG	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 218, 230
Bse1I	ACTGG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	251
BseLI	CCNNNNNNNGG	3 cut(s)	32, 218, 230
BseMII	CTCAG	2 cut(s)	137, 432
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	268, 287, 290
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	25, 415
BshVI	ATCGAT	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	32, 218, 230
BsnI	GGCC	2 cut(s)	25, 415
Bsp143I	GATC	2 cut(s)	244, 307
BspACI	CCGC	1 cut(s)	451
BspANI	GGCC	2 cut(s)	25, 415
BspCNI	CTCAG	2 cut(s)	136, 433
BspDI	ATCGAT	1 cut(s)	251
BspHI	TCATGA	1 cut(s)	241
BspPI	GGATC	2 cut(s)	239, 302
BspQI	GCTCTTC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	244, 307
Bst4CI	ACNGT	2 cut(s)	30, 483
Bst6I	CTCTTC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	123, 215, 441
BstKTI	GATC	2 cut(s)	247, 310
BstMBI	GATC	2 cut(s)	244, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	268, 287, 290
Bsu15I	ATCGAT	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	25, 415
BsuTUI	ATCGAT	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	281
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	251
CviAII	CATG	3 cut(s)	242, 272, 365
CviJI	RGCY	9 cut(s)	25, 36, 53, 155, 182, 261, 281, 340, 415
CviKI_1	RGCY	9 cut(s)	25, 36, 53, 155, 182, 261, 281, 340, 415
DdeI	CTNAG	3 cut(s)	123, 215, 441
DpnI	GATC	2 cut(s)	246, 309
DpnII	GATC	2 cut(s)	244, 307
DraI	TTTAAA	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	305
EcoT22I	ATGCAT	1 cut(s)	475
FaeI	CATG	3 cut(s)	245, 275, 368
FatI	CATG	3 cut(s)	241, 271, 364
Fnu4HI	GCNGC	3 cut(s)	276, 279, 282
Fsp4HI	GCNGC	3 cut(s)	276, 279, 282
FspBI	CTAG	3 cut(s)	54, 405, 494
GluI	GCNGC	3 cut(s)	276, 279, 282
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	25, 415
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	3 cut(s)	245, 275, 368
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	2 cut(s)	425, 529
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	187, 324, 442
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	2 cut(s)	30, 483
HpyCH4V	TGCA	3 cut(s)	203, 275, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	3 cut(s)	123, 215, 441
Hsp92II	CATG	3 cut(s)	245, 275, 368
Kzo9I	GATC	2 cut(s)	244, 307
LguI	GCTCTTC	1 cut(s)	251
LpnPI	CCDG	3 cut(s)	141, 153, 243
Lsp1109I	GCAGC	3 cut(s)	268, 287, 290
LweI	GCATC	2 cut(s)	190, 482
MaeI	CTAG	3 cut(s)	54, 405, 494
MaeIII	GTNAC	3 cut(s)	367, 389, 499
MalI	GATC	2 cut(s)	246, 309
MboI	GATC	2 cut(s)	244, 307
MboII	GAAGA	2 cut(s)	185, 268
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	538
MnlI	CCTC	7 cut(s)	50, 97, 145, 222, 249, 436, 505
Mox20I	TGGCCA	1 cut(s)	25
Mph1103I	ATGCAT	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	3 cut(s)	264, 294, 410
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	244, 307
NlaIII	CATG	3 cut(s)	245, 275, 368
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	368
PagI	TCATGA	1 cut(s)	241
PciI	ACATGT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	277, 280, 283
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
PscI	ACATGT	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	264, 294, 410
SatI	GCNGC	3 cut(s)	276, 279, 282
Sau3AI	GATC	2 cut(s)	244, 307
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	190, 482
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	3 cut(s)	54, 405, 494
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	30, 483
TaqI	TCGA	2 cut(s)	251, 532
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	264, 294, 410
Tru9I	TTAA	3 cut(s)	264, 294, 410
TseI	GCWGC	3 cut(s)	275, 278, 281
TspDTI	ATGAA	5 cut(s)	222, 269, 321, 375, 537
TspGWI	ACGGA	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	3 cut(s)	54, 405, 494
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.