Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Forward (+)

51391490 .. 51393458

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0366600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGAGGACACGGAGCCGTAGAGGTCGCCAAGACGGTGCTGGAGGTTGCTGACGTGGCGTGGAAGGCGATGGAGTGCGGCCACCACCACCTCGACCACCTCCGCCACGAGCACGAAGAAACCAAGGCCGGCGCGATTTCCGACGAGGAATTGGAGGCGCTGCGAGCTGAGAATCGGCGGCTGAGGAAATCGCTGGAGCAGAACCTGAAGCTGCTCGAGAACCTAACTGAATCGCCTACTCTACTGAACGATTGCCCTCCTGACCTGTATGCCCGCCTTGTAGCTACGGTGAACTCTGAAAACTTCTTGACGAGAATTAAAGCTCTTCAGCAGAAATCTGTGGATTGCAATCACTTTCCTTTCAAGGTTGCTACAGGGAGTGATTTGGAGGAAGCTGAAATTCTCATCAATGTTGACCAGAAAGAACCGAGTTGGTGGGTTTGGGTGACAGAAGATATGCTTCCGGGGAATGTTGAGGAAAGGAGTGGAATTGACAATGATAGTTATGTGGTTGTTAGTGAGGAGCATGTGGTGGATGGGGTTGCAGATTTTATGGCCAAGTGTATTATGTCGAACCCTAAAGCTGGGAACATGACACCGGAGGAGTTGCAGAAAATTGTAGCAAAAGCAACGGCTGGTGTGAGCAAATTGGAGAAGGTTTTGGGTATTTGGCATGCTGGGAAGCTGTTTTATGCCCTGTCCACCTGGGGACTTGCTCTAGCCGGGTTGTATAGGACCCGTGCTGTAATAAGGCTTGCTGCGATGGGGGTGCATACAACAAGCAAATTGCTTATGAGGGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

268

Amino Acids

29.76

Weight (kDa)

5.58

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	4 cut(s)	78, 103, 178, 274
AcoI	YGGCCR	2 cut(s)	79, 555
AcsI	RAATTY	1 cut(s)	399
AcuI	CTGAAG	2 cut(s)	227, 311
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	704
AluBI	AGCT	7 cut(s)	167, 211, 284, 323, 395, 584, 685
AluI	AGCT	7 cut(s)	167, 211, 284, 323, 395, 584, 685
Alw21I	GWGCWC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	79, 126, 555
ApeKI	GCWGC	3 cut(s)	160, 211, 758
ApoI	RAATTY	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	134, 160
AspS9I	GGNCC	1 cut(s)	735
AsuC2I	CCSGG	2 cut(s)	465, 724
AsuHPI	GGTGA	2 cut(s)	301, 457
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	557
BauI	CACGAG	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	114
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	3 cut(s)	147, 198, 745
BccI	CCATC	3 cut(s)	64, 530, 757
BceAI	ACGGC	2 cut(s)	2, 648
BcgI	CGANNNNNNTGC	2 cut(s)	751, 785
BciT130I	CCWGG	1 cut(s)	706
BcnI	CCSGG	2 cut(s)	465, 724
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	5 cut(s)	79, 161, 179, 212, 759
BlsI	GCNGC	5 cut(s)	80, 162, 180, 213, 760
Bme1390I	CCNGG	3 cut(s)	465, 706, 724
Bme18I	GGWCC	1 cut(s)	735
BmeT110I	CYCGRG	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	735
BmiI	GGNNCC	2 cut(s)	16, 737
BmrFI	CCNGG	3 cut(s)	465, 706, 724
BpmI	CTGGAG	2 cut(s)	62, 215
Bpu10I	CCTNAGC	1 cut(s)	182
BpuMI	CCSGG	2 cut(s)	465, 724
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	123, 464, 705
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	706
BseDI	CCNNGG	3 cut(s)	123, 464, 705
BseGI	GGATG	1 cut(s)	541
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	159, 173
BseRI	GAGGAG	2 cut(s)	536, 617
BseXI	GCAGC	3 cut(s)	147, 198, 745
BseYI	CCCAGC	2 cut(s)	584, 677
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	3 cut(s)	81, 128, 557
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	4 cut(s)	129, 464, 599, 723
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	3 cut(s)	81, 128, 557
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	78, 103, 178, 274
BspANI	GGCC	3 cut(s)	81, 128, 557
BspCNI	CTCAG	2 cut(s)	160, 174
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	2 cut(s)	16, 737
BspQI	GCTCTTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	123, 464, 705
BssSI	CACGAG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	706
Bst4CI	ACNGT	2 cut(s)	37, 289
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	5 cut(s)	130, 165, 274, 675, 756
BstDEI	CTNAG	2 cut(s)	168, 182
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	134, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 65, 164
BstNI	CCWGG	1 cut(s)	706
BstNSI	RCATGY	2 cut(s)	530, 677
BstSCI	CCNGG	3 cut(s)	463, 704, 722
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	147, 198, 745
BsuRI	GGCC	3 cut(s)	81, 128, 557
BtgZI	GCGATG	2 cut(s)	83, 776
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	541
Cac8I	GCNNGC	5 cut(s)	130, 165, 274, 675, 756
CaiI	CAGNNNCTG	1 cut(s)	205
CfoI	GCGC	2 cut(s)	134, 160
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	735
CviAII	CATG	3 cut(s)	527, 592, 674
DdeI	CTNAG	2 cut(s)	168, 182
EaeI	YGGCCR	2 cut(s)	79, 555
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	735
Eco57I	CTGAAG	2 cut(s)	227, 311
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	704
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	530, 595, 677
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	3 cut(s)	526, 591, 673
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	5 cut(s)	79, 161, 179, 212, 759
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	5 cut(s)	79, 161, 179, 212, 759
FspBI	CTAG	1 cut(s)	719
GlaI	GCGC	2 cut(s)	133, 159
GluI	GCNGC	5 cut(s)	79, 161, 179, 212, 759
GsaI	CCCAGC	2 cut(s)	588, 681
GsuI	CTGGAG	2 cut(s)	62, 215
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	81, 128, 557
HapII	CCGG	4 cut(s)	129, 464, 599, 723
HhaI	GCGC	2 cut(s)	134, 160
Hin1II	CATG	3 cut(s)	530, 595, 677
Hin6I	GCGC	2 cut(s)	132, 158
HinP1I	GCGC	2 cut(s)	132, 158
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	172, 230
HpaII	CCGG	4 cut(s)	129, 464, 599, 723
HphI	GGTGA	2 cut(s)	301, 457
Hpy166II	GTNNAC	3 cut(s)	292, 415, 702
Hpy188I	TCNGA	2 cut(s)	142, 298
Hpy188III	TCNNGA	3 cut(s)	217, 260, 307
Hpy8I	GTNNAC	3 cut(s)	292, 415, 702
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	58, 649
HpyCH4III	ACNGT	2 cut(s)	37, 289
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	348, 545, 610, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 65, 164
HpyF3I	CTNAG	2 cut(s)	168, 182
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	530, 595, 677
HspAI	GCGC	2 cut(s)	132, 158
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	3 cut(s)	14, 196, 523
Lsp1109I	GCAGC	3 cut(s)	147, 198, 745
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	445
MboII	GAAGA	3 cut(s)	128, 317, 464
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	7 cut(s)	149, 315, 399, 489, 615, 647, 785
MluNI	TGGCCA	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	557
MroNI	GCCGGC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	557
MspI	CCGG	4 cut(s)	129, 464, 599, 723
MspR9I	CCNGG	3 cut(s)	465, 706, 724
MvaI	CCWGG	1 cut(s)	706
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	56, 65, 164
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	2 cut(s)	465, 724
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	530, 595, 677
NlaIV	GGNNCC	2 cut(s)	16, 737
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	2 cut(s)	530, 677
PaeI	GCATGC	1 cut(s)	677
PaeR7I	CTCGAG	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	172, 230
PkrI	GCNGC	5 cut(s)	80, 162, 180, 213, 760
PpuMI	RGGWCCY	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	704
PspFI	CCCAGC	2 cut(s)	584, 677
PspGI	CCWGG	1 cut(s)	704
PspN4I	GGNNCC	2 cut(s)	16, 737
PspPI	GGNCC	1 cut(s)	735
PspPPI	RGGWCCY	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	5 cut(s)	79, 161, 179, 212, 759
Sau96I	GGNCC	1 cut(s)	735
ScrFI	CCNGG	3 cut(s)	465, 706, 724
SduI	GDGCHC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	735
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	677
Sse9I	AATT	7 cut(s)	149, 315, 399, 489, 615, 647, 785
SsiI	CCGC	4 cut(s)	78, 103, 178, 274
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	3 cut(s)	463, 704, 722
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	37, 289
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	93, 216, 572
TasI	AATT	7 cut(s)	149, 315, 399, 489, 615, 647, 785
TauI	GCSGC	2 cut(s)	81, 181
TfiI	GAWTC	2 cut(s)	172, 230
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	160, 211, 758
Tsp45I	GTSAC	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	735
XapI	RAATTY	1 cut(s)	399
XceI	RCATGY	2 cut(s)	530, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.