pycom17g02270

Plant mobile domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
1454267 .. 1456427
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g02270.5

Sequence Viewer

Length: 1809 bp
ATGAAGAAGGCAAGAAAAACCAAGGAGGCTGCAAGATCATCTAAGAAAAGTAATGCTAATGAGAAAAATGTTCCGGTACATCCCCCTGCATCTGTGCGAAAGCGAAAGGCTGCCTCCTCTAATGAATCAGAGGTGGTTGATGATTCTGTAGAGGATAAACCATCTGTGGATGGTGTTGTGGACGACATCCAAGCTATGGACAATACAAATTTCGGGGCCATCGTCTTAGTTACAGACGATACAAATGTTGGGGCCAACGTCTCAGCTACAGCTACAGACGATATAGATGTTGGGGTTGATGCCGAAGCGACAGAACCTTTTCCAGGAGGGCCAACAGATACATCATTGCTAAAGAGTTTTAAGAGTCATGTTGCTGCGGCAGTTTGGAATAATGAGGAACGTGGTCCGCTAAGGTGCATGTCCAAGTGGAATACACTGAAAGAATGGAAATGGCAGGACAAGCAAAATAATAACACTTTTAGGAAGTACATGACAGATTCATGTTTGTTACCGCTGCTGGAGTGTACTTATCGAATTGTTGATAAGATAGTGGTCTCTGCTTTTGTTGAGCGCTGGCAGCCAGAGACTAATACCTTTCACCTACCATTTGGTGAGATGACCATTACTTTAGACGACGTTTCAAACCTCATAGGGGTTCCTATCACAGGCAAGGCGATCTCTTTACAAGCGGATGATGTCATGAGTAATCATGAACTATTGGTAGAGTTATTAGGGGTTAATGACGAGGAGGCAACCGAGGCTTTGAGCGAGTTCAATGAAGAATATGTGACTCTTTCTTGGTTACGAAAACATTTTGAAGGTGTGAGTGATACAGACTCAACGGAAGCAAATAAGTGTGCAGCTAGGGCTTACTTGTTGTACTTGTTGGGATGTACTCTTTTTGTGGACAAAAGCGGGACTAGGGTACATGTTACTTATCTAAGACTACTTAGGGATCTTGATGCTGTAAGAGGCTATGCATGGGGTGCTAGTGCACTAGCTTGGTTATATCGTCAGTTAGGGCAATCGACTAGATCTAAGGTCAAGCAAATGAGTGGCTATATGACCTTGTTAGAGGCATGGGTGTACGAACACATGCATCTAATTTGTAGCCCTAATTATGACCAAAATTACTCTGATATTGACCCTCGTGCTTGTCGTTGGAAGCCACGAACGTCTAGTGGAACCACGACAGATGACTTGCAGAAGATGAGGAAAAAGTTAGATTCTTTGACAGCCAACCAGGTCACCTGGGAACCCTACACATCTCGAAGACAAGCACATCCGTTTCATGAGATAACATACTTTACTGGGATGTTAAAATGCTTCGACGTTGTTGAGCCTTACTGTCCTGAGAGGGTACTTAGGCAGTTTGGACGTGTCCAGACAATTCCAAAGGCACCGTGTGTCCTTCCTCGAAGCACAAGAGCAACTCATGCATCAGTTAACAAGGTATTAAATGAATACATTGATGGGATGTGGGATGGGTGGCAGAATCACGTCTTGCATCAAAATAACCGAAGCAGCCCAGTTAGCGTTGCATCAGATGTTGTCTCGGGGTACATGGACTGGTACCACAGAGTATCTCATCCTTATGTTCACAACCCAGCAAATAGTACTTCCTCATTTGACCCACAATATACCTCGCACACGTCATACTATCAGGATCGTGTGCAACGTATCCTGAACGTCACTAGGCGTATAGTGGACATGGGGAAGGAAGTTGCATTGAGAGATTTCCCTGATGATGTCTACAAGGCAGTTGAGAGCATACAAGATCTTTTAGAGGGTAGAAGTTCGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

603

Amino Acids

68.11

Weight (kDa)

5.9

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1572
AccB1I GGYRCC 2 cut(s) 1399, 1572
AccB7I CCANNNNNTGG 1 cut(s) 196
AccI GTMKAC 1 cut(s) 1752
AciI CCGC 5 cut(s) 377, 407, 512, 689, 915
AclWI GGATC 2 cut(s) 963, 1674
AcsI RAATTY 1 cut(s) 208
AdeI CACNNNGTG 1 cut(s) 1406
AfeI AGCGCT 1 cut(s) 572
AfiI CCNNNNNNNGG 4 cut(s) 196, 323, 652, 665
AflIII ACRYGT 3 cut(s) 928, 1378, 1650
AgsI TTSAA 3 cut(s) 642, 775, 818
AjiI CACGTC 3 cut(s) 1379, 1501, 1653
AjnI CCWGG 3 cut(s) 322, 1242, 1250
AluBI AGCT 5 cut(s) 194, 266, 272, 863, 1001
AluI AGCT 5 cut(s) 194, 266, 272, 863, 1001
Alw21I GWGCWC 1 cut(s) 997
Alw26I GTCTC 4 cut(s) 265, 559, 578, 1558
Alw44I GTGCAC 1 cut(s) 993
AlwI GGATC 2 cut(s) 963, 1674
Ama87I CYCGRG 1 cut(s) 1555
Aor51HI AGCGCT 1 cut(s) 572
AoxI GGCC 3 cut(s) 216, 252, 329
ApaLI GTGCAC 1 cut(s) 993
ApeKI GCWGC 7 cut(s) 29, 110, 374, 514, 577, 860, 1524
ApoI RAATTY 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 1572
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 4 cut(s) 216, 252, 329, 404
AsuHPI GGTGA 3 cut(s) 590, 623, 1240
AvaI CYCGRG 1 cut(s) 1555
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 997
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BanI GGYRCC 2 cut(s) 1399, 1572
BauI CACGAG 1 cut(s) 1149
BbsI GAAGAC 1 cut(s) 1279
Bbv12I GWGCWC 1 cut(s) 997
BbvI GCAGC 7 cut(s) 16, 97, 361, 501, 589, 872, 1536
BccI CCATC 6 cut(s) 164, 169, 227, 1466, 1478, 1796
BciT130I CCWGG 3 cut(s) 324, 1244, 1252
BciVI GTATCC 1 cut(s) 1691
BcoDI GTCTC 4 cut(s) 265, 559, 578, 1558
BfaI CTAG 7 cut(s) 864, 921, 990, 998, 1032, 1179, 1695
BfmI CTRYAG 3 cut(s) 147, 267, 273
BfoI RGCGCY 1 cut(s) 574
BfuI GTATCC 1 cut(s) 1691
BglII AGATCT 2 cut(s) 1034, 1777
BisI GCNGC 8 cut(s) 30, 111, 375, 378, 515, 578, 861, 1525
BlsI GCNGC 8 cut(s) 31, 112, 376, 379, 516, 579, 862, 1526
BmcAI AGTACT 1 cut(s) 1618
Bme1390I CCNGG 3 cut(s) 324, 1244, 1252
Bme18I GGWCC 1 cut(s) 404
BmeT110I CYCGRG 1 cut(s) 1555
BmgBI CACGTC 3 cut(s) 1379, 1501, 1653
BmgT120I GGNCC 4 cut(s) 216, 252, 329, 404
BmiI GGNNCC 7 cut(s) 217, 253, 657, 1186, 1257, 1401, 1574
BmrFI CCNGG 3 cut(s) 324, 1244, 1252
BmrI ACTGGG 2 cut(s) 1320, 1523
BmsI GCATC 7 cut(s) 98, 289, 952, 1108, 1448, 1516, 1550
BmuI ACTGGG 2 cut(s) 1320, 1523
BpiI GAAGAC 1 cut(s) 1279
BpmI CTGGAG 1 cut(s) 539
Bpu10I CCTNAGC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 3 cut(s) 21, 756, 1251
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 323, 652, 665
Bse1I ACTGG 3 cut(s) 1315, 1529, 1574
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 3 cut(s) 324, 1244, 1252
BseDI CCNNGG 3 cut(s) 21, 756, 1251
BseLI CCNNNNNNNGG 4 cut(s) 196, 323, 652, 665
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 2 cut(s) 276, 1344
BseNI ACTGG 3 cut(s) 1315, 1529, 1574
BseRI GAGGAG 2 cut(s) 106, 761
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 7 cut(s) 16, 97, 361, 501, 589, 872, 1536
BseYI CCCAGC 1 cut(s) 1606
BsgI GTGCAG 1 cut(s) 879
BshFI GGCC 3 cut(s) 218, 254, 331
BshNI GGYRCC 2 cut(s) 1399, 1572
BsiHKAI GWGCWC 1 cut(s) 997
BsiHKCI CYCGRG 1 cut(s) 1555
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 4 cut(s) 196, 323, 652, 665
BsmAI GTCTC 4 cut(s) 265, 559, 578, 1558
BsmBI CGTCTC 1 cut(s) 265
BsmFI GGGAC 1 cut(s) 931
BsnI GGCC 3 cut(s) 218, 254, 331
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 1555
Bsp1286I GDGCHC 1 cut(s) 997
Bsp143I GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
BspACI CCGC 5 cut(s) 377, 407, 512, 689, 915
BspANI GGCC 3 cut(s) 218, 254, 331
BspCNI CTCAG 2 cut(s) 275, 1345
BspHI TCATGA 3 cut(s) 699, 709, 1291
BspLI GGNNCC 7 cut(s) 217, 253, 657, 1186, 1257, 1401, 1574
BspPI GGATC 2 cut(s) 963, 1674
BspT107I GGYRCC 2 cut(s) 1399, 1572
BspTNI GGTCTC 1 cut(s) 559
BsrDI GCAATG 1 cut(s) 344
BsrI ACTGG 3 cut(s) 1315, 1529, 1574
BssECI CCNNGG 3 cut(s) 21, 756, 1251
BssMI GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
BssSI CACGAG 1 cut(s) 1149
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 1149
Bst2UI CCWGG 3 cut(s) 324, 1244, 1252
Bst4CI ACNGT 2 cut(s) 1349, 1404
BstAPI GCANNNNNTGC 2 cut(s) 986, 1436
BstC8I GCNNGC 1 cut(s) 575
BstDEI CTNAG 9 cut(s) 42, 226, 262, 410, 941, 950, 1038, 1353, 1364
BstEII GGTNACC 1 cut(s) 1246
BstENI CCTNNNNNAGG 2 cut(s) 321, 663
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 6 cut(s) 38, 678, 958, 1037, 1669, 1780
BstMAI GTCTC 4 cut(s) 265, 559, 578, 1558
BstMBI GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
BstMWI GCNNNNNNNGC 7 cut(s) 460, 577, 758, 866, 986, 1436, 1533
BstNI CCWGG 3 cut(s) 324, 1244, 1252
BstNSI RCATGY 3 cut(s) 421, 932, 1099
BstPI GGTNACC 1 cut(s) 1246
BstSCI CCNGG 3 cut(s) 322, 1242, 1250
BstSFI CTRYAG 3 cut(s) 147, 267, 273
BstSLI GKGCMC 1 cut(s) 997
BstV1I GCAGC 7 cut(s) 16, 97, 361, 501, 589, 872, 1536
BstV2I GAAGAC 1 cut(s) 1279
BstX2I RGATCY 3 cut(s) 955, 1034, 1777
BstYI RGATCY 3 cut(s) 955, 1034, 1777
BsuI GTATCC 1 cut(s) 1691
BsuRI GGCC 3 cut(s) 218, 254, 331
BtrI CACGTC 3 cut(s) 1379, 1501, 1653
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 575
CciI TCATGA 3 cut(s) 699, 709, 1291
CfoI GCGC 1 cut(s) 573
Cfr13I GGNCC 4 cut(s) 216, 252, 329, 404
CsiI ACCWGGT 1 cut(s) 1242
DdeI CTNAG 9 cut(s) 42, 226, 262, 410, 941, 950, 1038, 1353, 1364
DpnI GATC 6 cut(s) 37, 677, 957, 1036, 1668, 1779
DpnII GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
DraIII CACNNNGTG 1 cut(s) 1406
Eco130I CCWWGG 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 404
Eco47III AGCGCT 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 1555
Eco91I GGTNACC 1 cut(s) 1246
EcoNI CCTNNNNNAGG 2 cut(s) 321, 663
EcoO65I GGTNACC 1 cut(s) 1246
EcoRII CCWGG 3 cut(s) 322, 1242, 1250
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 3 cut(s) 982, 1101, 1441
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 265
FaqI GGGAC 1 cut(s) 931
FauI CCCGC 1 cut(s) 908
FblI GTMKAC 1 cut(s) 1752
Fnu4HI GCNGC 8 cut(s) 30, 111, 375, 378, 515, 578, 861, 1525
Fsp4HI GCNGC 8 cut(s) 30, 111, 375, 378, 515, 578, 861, 1525
FspBI CTAG 7 cut(s) 864, 921, 990, 998, 1032, 1179, 1695
GlaI GCGC 1 cut(s) 572
GluI GCNGC 8 cut(s) 30, 111, 375, 378, 515, 578, 861, 1525
GsaI CCCAGC 1 cut(s) 1610
GsuI CTGGAG 1 cut(s) 539
HaeII RGCGCY 1 cut(s) 574
HaeIII GGCC 3 cut(s) 218, 254, 331
HapII CCGG 1 cut(s) 74
HhaI GCGC 1 cut(s) 573
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HincII GTYRAC 1 cut(s) 1447
HindII GTYRAC 1 cut(s) 1447
HinfI GANTC 8 cut(s) 125, 143, 364, 497, 790, 836, 1226, 1495
HpaI GTTAAC 1 cut(s) 1447
HpaII CCGG 1 cut(s) 74
HphI GGTGA 3 cut(s) 590, 623, 1240
Hpy166II GTNNAC 9 cut(s) 181, 525, 907, 995, 1087, 1447, 1600, 1708, 1753
Hpy188I TCNGA 4 cut(s) 130, 1138, 1546, 1801
Hpy188III TCNNGA 9 cut(s) 700, 710, 959, 1269, 1292, 1352, 1384, 1664, 1684
Hpy8I GTNNAC 9 cut(s) 181, 525, 907, 995, 1087, 1447, 1600, 1708, 1753
Hpy99I CGWCG 2 cut(s) 638, 1334
HpyAV CCTTC 3 cut(s) 812, 1421, 1711
HpyCH4III ACNGT 2 cut(s) 1349, 1404
HpyF10VI GCNNNNNNNGC 7 cut(s) 460, 577, 758, 866, 986, 1436, 1533
HpyF3I CTNAG 9 cut(s) 42, 226, 262, 410, 941, 950, 1038, 1353, 1364
HspAI GCGC 1 cut(s) 571
KpnI GGTACC 1 cut(s) 1576
KspAI GTTAAC 1 cut(s) 1447
Kzo9I GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
Lsp1109I GCAGC 7 cut(s) 16, 97, 361, 501, 589, 872, 1536
LweI GCATC 7 cut(s) 98, 289, 952, 1108, 1448, 1516, 1550
MabI ACCWGGT 1 cut(s) 1242
MaeI CTAG 7 cut(s) 864, 921, 990, 998, 1032, 1179, 1695
MaeIII GTNAC 7 cut(s) 229, 507, 787, 801, 931, 1246, 1690
MalI GATC 6 cut(s) 37, 677, 957, 1036, 1668, 1779
MboI GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
MboII GAAGA 4 cut(s) 16, 791, 1219, 1284
MflI RGATCY 3 cut(s) 955, 1034, 1777
MhlI GDGCHC 1 cut(s) 997
MluCI AATT 6 cut(s) 208, 534, 1104, 1117, 1129, 1389
MlyI GAGTC 3 cut(s) 373, 784, 830
MmeI TCCRAC 1 cut(s) 1142
Mph1103I ATGCAT 3 cut(s) 982, 1101, 1441
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 5 cut(s) 360, 738, 1319, 1446, 1457
MslI CAYNNNNRTG 1 cut(s) 1593
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 3 cut(s) 324, 1244, 1252
MvaI CCWGG 3 cut(s) 324, 1244, 1252
MwoI GCNNNNNNNGC 7 cut(s) 460, 577, 758, 866, 986, 1436, 1533
NdeII GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
NlaIV GGNNCC 7 cut(s) 217, 253, 657, 1186, 1257, 1401, 1574
NmuCI GTSAC 3 cut(s) 787, 1246, 1690
NsiI ATGCAT 3 cut(s) 982, 1101, 1441
NspI RCATGY 3 cut(s) 421, 932, 1099
PagI TCATGA 3 cut(s) 699, 709, 1291
PciI ACATGT 1 cut(s) 928
PcsI WCGNNNNNNNCGW 3 cut(s) 219, 1156, 1675
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 5 cut(s) 125, 143, 497, 1226, 1495
PflMI CCANNNNNTGG 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 8 cut(s) 31, 112, 376, 379, 516, 579, 862, 1526
PleI GAGTC 3 cut(s) 372, 784, 830
PpsI GAGTC 3 cut(s) 372, 784, 830
PscI ACATGT 1 cut(s) 928
Psp6I CCWGG 3 cut(s) 322, 1242, 1250
PspEI GGTNACC 1 cut(s) 1246
PspFI CCCAGC 1 cut(s) 1606
PspGI CCWGG 3 cut(s) 322, 1242, 1250
PspN4I GGNNCC 7 cut(s) 217, 253, 657, 1186, 1257, 1401, 1574
PspPI GGNCC 4 cut(s) 216, 252, 329, 404
PsuI RGATCY 3 cut(s) 955, 1034, 1777
RseI CAYNNNNRTG 1 cut(s) 1593
SaqAI TTAA 5 cut(s) 360, 738, 1319, 1446, 1457
SatI GCNGC 8 cut(s) 30, 111, 375, 378, 515, 578, 861, 1525
Sau3AI GATC 6 cut(s) 35, 675, 955, 1034, 1666, 1777
Sau96I GGNCC 4 cut(s) 216, 252, 329, 404
ScaI AGTACT 1 cut(s) 1618
SchI GAGTC 3 cut(s) 373, 784, 830
ScrFI CCNGG 3 cut(s) 324, 1244, 1252
SduI GDGCHC 1 cut(s) 997
SexAI ACCWGGT 1 cut(s) 1242
SfaNI GCATC 7 cut(s) 98, 289, 952, 1108, 1448, 1516, 1550
SfcI CTRYAG 3 cut(s) 147, 267, 273
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 1593
Sse9I AATT 6 cut(s) 208, 534, 1104, 1117, 1129, 1389
SsiI CCGC 5 cut(s) 377, 407, 512, 689, 915
SspMI CTAG 7 cut(s) 864, 921, 990, 998, 1032, 1179, 1695
StyD4I CCNGG 3 cut(s) 322, 1242, 1250
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 1349, 1404
TaqI TCGA 5 cut(s) 532, 1028, 1270, 1329, 1417
TasI AATT 6 cut(s) 208, 534, 1104, 1117, 1129, 1389
TatI WGTACW 5 cut(s) 486, 524, 879, 893, 1616
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 5 cut(s) 125, 143, 497, 1226, 1495
Tru1I TTAA 5 cut(s) 360, 738, 1319, 1446, 1457
Tru9I TTAA 5 cut(s) 360, 738, 1319, 1446, 1457
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 3 cut(s) 787, 1246, 1690
TseI GCWGC 7 cut(s) 29, 110, 374, 514, 577, 860, 1524
Tsp45I GTSAC 3 cut(s) 787, 1246, 1690
TspDTI ATGAA 7 cut(s) 17, 138, 489, 726, 792, 1280, 1476
TspGWI ACGGA 2 cut(s) 857, 1275
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 1 cut(s) 196
VneI GTGCAC 1 cut(s) 993
VpaK11BI GGWCC 1 cut(s) 404
XagI CCTNNNNNAGG 2 cut(s) 321, 663
XapI RAATTY 1 cut(s) 208
XceI RCATGY 3 cut(s) 421, 932, 1099
XmiI GTMKAC 1 cut(s) 1752
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 7 cut(s) 864, 921, 990, 998, 1032, 1179, 1695
ZrmI AGTACT 1 cut(s) 1618
Zsp2I ATGCAT 3 cut(s) 982, 1101, 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.