pycom17g02450

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001683
Physical Location & Seq
Reverse (-)
1615836 .. 1616780
945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g02450.1

Sequence Viewer

Length: 708 bp
ATGAGTGGCTATATGACCTTGTTAGAGACATGGGTGTACGAACACATGCATCTAGTTTGTAGCCCTAATTATGACCAAAATTACTCTGATATTCACCCTCATGCATGTCGTTGGAAGCCACGAACGTCTAGTGGAACCACGACACATGACTTGCAGAAGATGAGGAAAAAGTTGGATTCTTTGACAGCCAACCAGTTCACCTGGGAACCCTACACATCTCGTAGACAAGCACAACCATTTCATGAGATAACATACTTTACTGGGATGTTAAAATGCTTCGATGTTGTTGAGCCCTACTGTCTTGAGAGGGTACTTAGGCAGTTTGGACATGTACAGACAATTCCAAAGGCACCGTGTTTCCTTCCTCGAAGCACAAAAGCAACTCATGCATCAGTTAACAAGGTATTATTTGAATACATTGATGGGATGTGGGATAGGTGGCAGAATCACGTCTTGCATCAAAATAACCGAAGCAGCCCAGTTAGCATTGCATCAGATGTTGTCTCAGGGTACATGATCTGGTACCACAAAGTATCTCATCCTTATGTCCACAACCCAGCACTTAGTACTTCCTCATTTGACCCACAATGTACCTCTCACACATTATACCATCAGGATCGTGTGCAACGTATCCTGAACGTCTCTAGGCATATTGTGGACATGGGAAAGGAGGTTGCATTGAGAGATTTCCCTGATGATGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

236

Amino Acids

27.55

Weight (kDa)

8.19

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 2 - 176 1.8e-24 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 522
AccB1I GGYRCC 2 cut(s) 349, 522
AccI GTMKAC 1 cut(s) 223
AclWI GGATC 1 cut(s) 624
AfaI GTAC 7 cut(s) 38, 312, 333, 512, 524, 568, 592
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 1 cut(s) 413
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 20, 508, 646
AlwI GGATC 1 cut(s) 624
ApeKI GCWGC 1 cut(s) 474
Asp718I GGTACC 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 86, 190
BanI GGYRCC 2 cut(s) 349, 522
BanII GRGCYC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 486
BccI CCATC 2 cut(s) 416, 618
BciT130I CCWGG 1 cut(s) 202
BciVI GTATCC 1 cut(s) 641
BcoDI GTCTC 3 cut(s) 20, 508, 646
BfaI CTAG 3 cut(s) 53, 129, 645
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 1 cut(s) 475
BlsI GCNGC 1 cut(s) 476
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 202
BmgBI CACGTC 1 cut(s) 451
BmiI GGNNCC 4 cut(s) 136, 207, 351, 524
BmrFI CCNGG 1 cut(s) 202
BmrI ACTGGG 2 cut(s) 270, 473
BmsI GCATC 5 cut(s) 58, 398, 466, 500, 688
BmuI ACTGGG 2 cut(s) 270, 473
BpuEI CTTGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 193, 265, 479
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 270, 432, 538
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 193, 265, 479
BseXI GCAGC 1 cut(s) 486
BseYI CCCAGC 1 cut(s) 556
BshNI GGYRCC 2 cut(s) 349, 522
BsmAI GTCTC 3 cut(s) 20, 508, 646
BsmBI CGTCTC 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 2 cut(s) 516, 616
BspCNI CTCAG 1 cut(s) 518
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 136, 207, 351, 524
BspPI GGATC 1 cut(s) 624
BspT107I GGYRCC 2 cut(s) 349, 522
BsrDI GCAATG 1 cut(s) 486
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 3 cut(s) 193, 265, 479
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 516, 616
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 299, 354
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 314, 505, 563
BstF5I GGATG 3 cut(s) 270, 432, 538
BstKTI GATC 2 cut(s) 519, 619
BstMAI GTCTC 3 cut(s) 20, 508, 646
BstMBI GATC 2 cut(s) 516, 616
BstMWI GCNNNNNNNGC 2 cut(s) 386, 483
BstNI CCWGG 1 cut(s) 202
BstNSI RCATGY 3 cut(s) 49, 108, 332
BstSCI CCNGG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 486
BsuI GTATCC 1 cut(s) 641
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 3 cut(s) 270, 432, 538
CciI TCATGA 1 cut(s) 241
Csp6I GTAC 7 cut(s) 37, 311, 332, 511, 523, 567, 591
CviJI RGCY 6 cut(s) 9, 63, 118, 188, 292, 477
CviKI_1 RGCY 6 cut(s) 9, 63, 118, 188, 292, 477
CviQI GTAC 7 cut(s) 37, 311, 332, 511, 523, 567, 591
DdeI CTNAG 3 cut(s) 314, 505, 563
DpnI GATC 2 cut(s) 518, 618
DpnII GATC 2 cut(s) 516, 616
Eco24I GRGCYC 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 200
EcoT22I ATGCAT 3 cut(s) 51, 106, 391
EcoT38I GRGCYC 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 646
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 475
FokI GGATG 3 cut(s) 277, 439, 525
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 475
FspBI CTAG 3 cut(s) 53, 129, 645
GluI GCNGC 1 cut(s) 475
GsaI CCCAGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 2 cut(s) 176, 445
HpaI GTTAAC 1 cut(s) 397
HphI GGTGA 2 cut(s) 86, 190
Hpy166II GTNNAC 6 cut(s) 37, 198, 224, 397, 550, 658
Hpy188I TCNGA 2 cut(s) 88, 496
Hpy188III TCNNGA 4 cut(s) 242, 302, 614, 634
Hpy8I GTNNAC 6 cut(s) 37, 198, 224, 397, 550, 658
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 2 cut(s) 299, 354
HpyCH4IV ACGT 4 cut(s) 125, 450, 628, 639
HpyCH4V TGCA 8 cut(s) 49, 104, 154, 389, 457, 491, 625, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 483
HpyF3I CTNAG 3 cut(s) 314, 505, 563
HpySE526I ACGT 4 cut(s) 125, 450, 628, 639
KpnI GGTACC 1 cut(s) 526
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 2 cut(s) 516, 616
Lsp1109I GCAGC 1 cut(s) 486
LweI GCATC 5 cut(s) 58, 398, 466, 500, 688
MaeI CTAG 3 cut(s) 53, 129, 645
MaeII ACGT 4 cut(s) 125, 450, 628, 639
MalI GATC 2 cut(s) 518, 618
MboI GATC 2 cut(s) 516, 616
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 3 cut(s) 67, 79, 339
MmeI TCCRAC 2 cut(s) 92, 153
MnlI CCTC 7 cut(s) 108, 156, 300, 375, 583, 604, 664
Mph1103I ATGCAT 3 cut(s) 51, 106, 391
MseI TTAA 2 cut(s) 269, 396
MslI CAYNNNNRTG 2 cut(s) 99, 543
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 386, 483
NdeII GATC 2 cut(s) 516, 616
NlaIV GGNNCC 4 cut(s) 136, 207, 351, 524
NsiI ATGCAT 3 cut(s) 51, 106, 391
NspI RCATGY 3 cut(s) 49, 108, 332
PagI TCATGA 1 cut(s) 241
PciI ACATGT 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 625
PfeI GAWTC 2 cut(s) 176, 445
PkrI GCNGC 1 cut(s) 476
PscI ACATGT 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 200
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 4 cut(s) 136, 207, 351, 524
RsaI GTAC 7 cut(s) 38, 312, 333, 512, 524, 568, 592
RsaNI GTAC 7 cut(s) 37, 311, 332, 511, 523, 567, 591
RseI CAYNNNNRTG 2 cut(s) 99, 543
SaqAI TTAA 2 cut(s) 269, 396
SatI GCNGC 1 cut(s) 475
Sau3AI GATC 2 cut(s) 516, 616
ScaI AGTACT 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 5 cut(s) 58, 398, 466, 500, 688
SmiMI CAYNNNNRTG 2 cut(s) 99, 543
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 67, 79, 339
SspMI CTAG 3 cut(s) 53, 129, 645
StyD4I CCNGG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 299, 354
TaiI ACGT 4 cut(s) 128, 453, 631, 642
TaqI TCGA 2 cut(s) 279, 367
TasI AATT 3 cut(s) 67, 79, 339
TatI WGTACW 2 cut(s) 331, 566
TfiI GAWTC 2 cut(s) 176, 445
Tru1I TTAA 2 cut(s) 269, 396
Tru9I TTAA 2 cut(s) 269, 396
TseI GCWGC 1 cut(s) 474
TspDTI ATGAA 1 cut(s) 230
XceI RCATGY 3 cut(s) 49, 108, 332
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 3 cut(s) 53, 129, 645
ZrmI AGTACT 1 cut(s) 568
Zsp2I ATGCAT 3 cut(s) 51, 106, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.