Rh3BG356900

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001683
Physical Location & Seq
Reverse (-)
42504661 .. 42506852
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG356900.1

Sequence Viewer

Length: 1299 bp
ATGGCTAGAGGTTCTAAACACCACGATTGCCCCATAACCTCAAAGACAAAAAGAAAATTTTGTTCTCAACCTTCTCAGTCAGTAGTGGACGATGGTATACTAGAGGCTGGGGTTGATACTGGGGAAGAACAAGCTTCTGAACCCTTTACAGATGCAGATGAACCTCTAAGTGGTCCATTTCCGGGAAGTCCTCATGATCCATCGGTGAAGAGCTTTAAAAGTCATGCAGCAGCTGCTATATGGTTTAATGAGGAACGTGATCCATTGAAACTTCAGAACCATTCATATAAGGTCACACAATGGGTATTTGATGAACATGTTACTAACCATAAGTTTTGGAGTTACATTGATGGGTCTAGGTTGAGGCCATTAGTTAACTGTTCATATTTAATTGGTAATAGAGTTGTTGTGTCAGCCTTTTGTGAGAGGTGGCAGCCTGAGACGAATACATTTCACTTATCCTTTGGTGAAATGACAATTACATTGGATAATGTTTTTAACATTTTGGGTATTCCAATTCAGGGTGATTCCATATCTGTATCTGAGGGTGTGCGGTTAGACAAAACTTATTATGCATCTTTACTGTCATCTACACTAGGAGTTACTATAGATGAGGCAAAGAATGAAATGAGTCGATATGGTGGAAATGGGGTAACACTAGAGTGGTTGAGATTAAGATTTCAGAGTATTTCAGATGATAGTTCTCTTGAATTTATTGAGTTCGCAGCAAGAGGATTCTTGCTATATATATTAGGTTGCACACTTTTTGTGGACAAGACTGGGAATAGGATGAATGTGATTTACCTACATTTTTTACGGGATCTTAATAGGGTTGGTCGGTATATATGCCTGGGGAGCTGCAGGGTTATCATTTTATTATATCGACAGTTAGGACTTGCATCTAGAGTTGGTTGTAGGCAAATTGGGGGTTATTTGACATTGCTTGAGGCTTGGATATATGAGCACTTCCGGAATGTAGTTTCCCCTCATCTTCGTGTTGAATATTCAGAGAATGATCCACGAGTGAATCGTTGGGAACCTCGAAAATATGCAGGTTTGTCACTTGTTTACGTGCAAGCTCTTCACCAACAGCTTGATCATATGCAAGCACACGAGGTCATATGGGATCCATATCGTGGTCATAGGGATGCTCATCCATTATTGGAAATCACATTTTACACAGGAATGCTTAAGTGTTTAGATATTGTGGAACCATATTATCCTGATAGGGTTCTAAGACAATTTGGTCGAGTTCAAACAATTCCTTGCAACCCTTACACCCCATCTCGTGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

432

Amino Acids

49.48

Weight (kDa)

6.6

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 132 - 424 2.5e-56 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1245
Acc36I ACCTGC 1 cut(s) 1043
AccB7I CCANNNNNTGG 1 cut(s) 1136
AccI GTMKAC 1 cut(s) 97
AccIII TCCGGA 1 cut(s) 969
AciI CCGC 1 cut(s) 553
AclWI GGATC 6 cut(s) 191, 254, 828, 1010, 1121, 1134
AcsI RAATTY 2 cut(s) 56, 710
AcuI CTGAAG 1 cut(s) 257
AfiI CCNNNNNNNGG 4 cut(s) 170, 182, 521, 1136
AflII CTTAAG 1 cut(s) 1190
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 4 cut(s) 268, 710, 1001, 1256
AjnI CCWGG 1 cut(s) 849
AleI CACNNNNGTG 1 cut(s) 661
AluBI AGCT 6 cut(s) 134, 213, 233, 858, 1079, 1093
AluI AGCT 6 cut(s) 134, 213, 233, 858, 1079, 1093
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 6 cut(s) 191, 254, 828, 1010, 1121, 1134
AlwNI CAGNNNCTG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 969
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 6 cut(s) 227, 230, 233, 433, 725, 858
ApoI RAATTY 2 cut(s) 56, 710
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 4 cut(s) 217, 479, 536, 1076
AvaII GGWCC 1 cut(s) 173
BamHI GGATCC 1 cut(s) 1126
BauI CACGAG 3 cut(s) 1020, 1112, 1287
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 6 cut(s) 220, 239, 242, 445, 737, 845
BccI CCATC 4 cut(s) 86, 208, 344, 1291
BciT130I CCWGG 1 cut(s) 851
BclI TGATCA 1 cut(s) 1096
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 6 cut(s) 6, 101, 357, 596, 659, 903
BfmI CTRYAG 2 cut(s) 606, 859
BfrI CTTAAG 1 cut(s) 1190
BfuAI ACCTGC 1 cut(s) 1043
BisI GCNGC 6 cut(s) 228, 231, 234, 434, 726, 859
BlsI GCNGC 6 cut(s) 229, 232, 235, 435, 727, 860
Bme1390I CCNGG 2 cut(s) 183, 851
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 1038, 1128, 1212
BmrFI CCNGG 2 cut(s) 183, 851
BmrI ACTGGG 2 cut(s) 129, 789
BmsI GCATC 4 cut(s) 142, 584, 908, 1138
BmuI ACTGGG 2 cut(s) 129, 789
BpuEI CTTGAG 1 cut(s) 965
BpuMI CCSGG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 1072
BsaBI GATNNNNATC 2 cut(s) 1131, 1152
BsaJI CCNNGG 1 cut(s) 850
BsaWI WCCGGW 1 cut(s) 969
Bsc4I CCNNNNNNNGG 4 cut(s) 170, 182, 521, 1136
Bse1I ACTGG 2 cut(s) 124, 784
Bse3DI GCAATG 1 cut(s) 938
Bse8I GATNNNNATC 2 cut(s) 1131, 1152
BseAI TCCGGA 1 cut(s) 969
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 1 cut(s) 850
BseGI GGATG 3 cut(s) 795, 1153, 1153
BseJI GATNNNNATC 2 cut(s) 1131, 1152
BseLI CCNNNNNNNGG 4 cut(s) 170, 182, 521, 1136
BseMI GCAATG 1 cut(s) 938
BseMII CTCAG 3 cut(s) 89, 429, 534
BseNI ACTGG 2 cut(s) 124, 784
BseXI GCAGC 6 cut(s) 220, 239, 242, 445, 737, 845
BseYI CCCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 966
BsiSI CCGG 2 cut(s) 182, 970
BslI CCNNNNNNNGG 4 cut(s) 170, 182, 521, 1136
BsmAI GTCTC 1 cut(s) 434
BsmBI CGTCTC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 1191
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 966
Bsp13I TCCGGA 1 cut(s) 969
Bsp143I GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
BspACI CCGC 1 cut(s) 553
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 3 cut(s) 88, 430, 535
BspEI TCCGGA 1 cut(s) 969
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 1038, 1128, 1212
BspMAI CTGCAG 1 cut(s) 863
BspMI ACCTGC 1 cut(s) 1043
BspPI GGATC 6 cut(s) 191, 254, 828, 1010, 1121, 1134
BspQI GCTCTTC 2 cut(s) 203, 1086
BspTI CTTAAG 1 cut(s) 1190
BsrDI GCAATG 1 cut(s) 938
BsrI ACTGG 2 cut(s) 124, 784
BssECI CCNNGG 1 cut(s) 850
BssMI GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
BssNAI GTATAC 1 cut(s) 98
BssSI CACGAG 3 cut(s) 1020, 1112, 1287
Bst1107I GTATAC 1 cut(s) 98
Bst2BI CACGAG 3 cut(s) 1020, 1112, 1287
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 3 cut(s) 380, 585, 888
Bst6I CTCTTC 2 cut(s) 203, 1086
BstAFI CTTAAG 1 cut(s) 1190
BstAPI GCANNNNNTGC 1 cut(s) 233
BstBAI YACGTR 1 cut(s) 1072
BstC8I GCNNGC 2 cut(s) 1077, 1107
BstDEI CTNAG 5 cut(s) 75, 167, 438, 543, 1235
BstF5I GGATG 3 cut(s) 795, 1153, 1153
BstKTI GATC 6 cut(s) 199, 262, 823, 1018, 1099, 1129
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
BstMWI GCNNNNNNNGC 2 cut(s) 233, 855
BstNI CCWGG 1 cut(s) 851
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 181, 849
BstSFI CTRYAG 2 cut(s) 606, 859
BstV1I GCAGC 6 cut(s) 220, 239, 242, 445, 737, 845
BstX2I RGATCY 2 cut(s) 820, 1126
BstYI RGATCY 2 cut(s) 820, 1126
BstZ17I GTATAC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 3 cut(s) 795, 1153, 1153
BveI ACCTGC 1 cut(s) 1043
Cac8I GCNNGC 2 cut(s) 1077, 1107
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 173
CviAII CATG 3 cut(s) 194, 224, 317
DdeI CTNAG 5 cut(s) 75, 167, 438, 543, 1235
DpnI GATC 6 cut(s) 198, 261, 822, 1017, 1098, 1128
DpnII GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
DraI TTTAAA 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 1245
DseDI GACNNNNNNGTC 1 cut(s) 1245
Eam1104I CTCTTC 2 cut(s) 203, 1086
EarI CTCTTC 2 cut(s) 203, 1086
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 849
EcoT22I ATGCAT 1 cut(s) 577
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 3 cut(s) 197, 227, 320
FatI CATG 3 cut(s) 193, 223, 316
FauNDI CATATG 2 cut(s) 1101, 1121
FbaI TGATCA 1 cut(s) 1096
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 6 cut(s) 228, 231, 234, 434, 726, 859
FokI GGATG 3 cut(s) 802, 1140, 1160
Fsp4HI GCNGC 6 cut(s) 228, 231, 234, 434, 726, 859
FspBI CTAG 6 cut(s) 6, 101, 357, 596, 659, 903
GluI GCNGC 6 cut(s) 228, 231, 234, 434, 726, 859
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 182, 970
Hin1II CATG 3 cut(s) 197, 227, 320
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 4 cut(s) 527, 631, 735, 1027
HpaI GTTAAC 1 cut(s) 376
HpaII CCGG 2 cut(s) 182, 970
HphI GGTGA 4 cut(s) 217, 479, 536, 1076
Hpy166II GTNNAC 5 cut(s) 88, 98, 376, 772, 1069
Hpy188I TCNGA 6 cut(s) 139, 276, 544, 684, 694, 1009
Hpy188III TCNNGA 5 cut(s) 194, 707, 903, 970, 1223
Hpy8I GTNNAC 5 cut(s) 88, 98, 376, 772, 1069
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 3 cut(s) 380, 585, 888
HpyCH4IV ACGT 2 cut(s) 256, 1071
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 855
HpyF3I CTNAG 5 cut(s) 75, 167, 438, 543, 1235
HpySE526I ACGT 2 cut(s) 256, 1071
Hsp92II CATG 3 cut(s) 197, 227, 320
Kpn2I TCCGGA 1 cut(s) 969
Ksp22I TGATCA 1 cut(s) 1096
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
LguI GCTCTTC 2 cut(s) 203, 1086
LmnI GCTCC 1 cut(s) 855
Lsp1109I GCAGC 6 cut(s) 220, 239, 242, 445, 737, 845
LweI GCATC 4 cut(s) 142, 584, 908, 1138
MaeI CTAG 6 cut(s) 6, 101, 357, 596, 659, 903
MaeII ACGT 2 cut(s) 256, 1071
MaeIII GTNAC 6 cut(s) 292, 319, 341, 601, 652, 1059
MalI GATC 6 cut(s) 198, 261, 822, 1017, 1098, 1128
MboI GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
MboII GAAGA 4 cut(s) 137, 220, 983, 1073
MflI RGATCY 2 cut(s) 820, 1126
MhlI GDGCHC 1 cut(s) 966
MluCI AATT 8 cut(s) 56, 390, 477, 516, 710, 921, 1241, 1260
MlyI GAGTC 1 cut(s) 640
Mph1103I ATGCAT 1 cut(s) 577
MroI TCCGGA 1 cut(s) 969
MseI TTAA 8 cut(s) 216, 246, 375, 389, 498, 674, 825, 1191
MslI CAYNNNNRTG 4 cut(s) 661, 993, 1146, 1184
MspA1I CMGCKG 1 cut(s) 233
MspCI CTTAAG 1 cut(s) 1190
MspI CCGG 2 cut(s) 182, 970
MspR9I CCNGG 2 cut(s) 183, 851
Mva1269I GAATGC 1 cut(s) 1191
MvaI CCWGG 1 cut(s) 851
MwoI GCNNNNNNNGC 2 cut(s) 233, 855
NciI CCSGG 1 cut(s) 183
NdeI CATATG 2 cut(s) 1101, 1121
NdeII GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
NlaIII CATG 3 cut(s) 197, 227, 320
NlaIV GGNNCC 3 cut(s) 1038, 1128, 1212
NmuCI GTSAC 2 cut(s) 292, 1059
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 661
PagI TCATGA 1 cut(s) 193
PciI ACATGT 1 cut(s) 316
PciSI GCTCTTC 2 cut(s) 203, 1086
PcsI WCGNNNNNNNCGW 1 cut(s) 1027
PctI GAATGC 1 cut(s) 1191
PfeI GAWTC 3 cut(s) 527, 735, 1027
PflMI CCANNNNNTGG 1 cut(s) 1136
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 6 cut(s) 229, 232, 235, 435, 727, 860
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
Ppu21I YACGTR 1 cut(s) 1072
PscI ACATGT 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 849
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 3 cut(s) 1038, 1128, 1212
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 863
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 820, 1126
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 4 cut(s) 661, 993, 1146, 1184
SapI GCTCTTC 2 cut(s) 203, 1086
SaqAI TTAA 8 cut(s) 216, 246, 375, 389, 498, 674, 825, 1191
SatI GCNGC 6 cut(s) 228, 231, 234, 434, 726, 859
Sau3AI GATC 6 cut(s) 196, 259, 820, 1015, 1096, 1126
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 2 cut(s) 183, 851
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 4 cut(s) 142, 584, 908, 1138
SfcI CTRYAG 2 cut(s) 606, 859
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 4 cut(s) 661, 993, 1146, 1184
SmlI CTYRAG 2 cut(s) 944, 1190
SmoI CTYRAG 2 cut(s) 944, 1190
Sse9I AATT 8 cut(s) 56, 390, 477, 516, 710, 921, 1241, 1260
SsiI CCGC 1 cut(s) 553
SspI AATATT 1 cut(s) 1004
SspMI CTAG 6 cut(s) 6, 101, 357, 596, 659, 903
StyD4I CCNGG 2 cut(s) 181, 849
TaaI ACNGT 3 cut(s) 380, 585, 888
TaiI ACGT 2 cut(s) 259, 1074
TaqI TCGA 5 cut(s) 634, 883, 1042, 1249, 1294
TasI AATT 8 cut(s) 56, 390, 477, 516, 710, 921, 1241, 1260
TfiI GAWTC 3 cut(s) 527, 735, 1027
Tru1I TTAA 8 cut(s) 216, 246, 375, 389, 498, 674, 825, 1191
Tru9I TTAA 8 cut(s) 216, 246, 375, 389, 498, 674, 825, 1191
TseFI GTSAC 2 cut(s) 292, 1059
TseI GCWGC 6 cut(s) 227, 230, 233, 433, 725, 858
Tsp45I GTSAC 2 cut(s) 292, 1059
TspDTI ATGAA 6 cut(s) 174, 273, 327, 372, 639, 806
Van91I CCANNNNNTGG 1 cut(s) 1136
Vha464I CTTAAG 1 cut(s) 1190
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 56, 710
XbaI TCTAGA 1 cut(s) 902
XceI RCATGY 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 97
XspI CTAG 6 cut(s) 6, 101, 357, 596, 659, 903
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.