Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Forward (+)

54453705 .. 54454449

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG367300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAACCCACATATGGCTAGAGGTCATAAACACCATGATTGCCCCACAACCTCAAAGACAAAAAGGAAATTTTGTTCTCAGCCTTCTCAGTTAGAAGTCGATGAGGGTGTTATAGATGATGGGGTTGATACTGCAGAAGAACAAGCTTGTGAACCATTTGCAGATGCAGATGAGCCTCTAAGTGGTCCATTTCCTGGTGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCCATATGGTTTAATAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

90

Amino Acids

9.81

Weight (kDa)

5.56

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	13, 182, 194
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	193
AloI	GAACNNNNNNTCC	2 cut(s)	58, 90
AluBI	AGCT	3 cut(s)	146, 228, 248
AluI	AGCT	3 cut(s)	146, 228, 248
AlwI	GGATC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	245, 248
ApoI	RAATTY	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	185, 200
AvaII	GGWCC	2 cut(s)	185, 200
BbvI	GCAGC	2 cut(s)	235, 257
BccI	CCATC	2 cut(s)	113, 220
BciT130I	CCWGG	1 cut(s)	195
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	246, 249
BlsI	GCNGC	2 cut(s)	247, 250
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	2 cut(s)	185, 200
BmgT120I	GGNCC	2 cut(s)	185, 200
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 182, 194
BseBI	CCWGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	13, 182, 194
BseMII	CTCAG	2 cut(s)	92, 101
BseXI	GCAGC	2 cut(s)	235, 257
BslI	CCNNNNNNNGG	3 cut(s)	13, 182, 194
Bsp143I	GATC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	91, 100
BspHI	TCATGA	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	218
BssMI	GATC	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	218
BstDEI	CTNAG	3 cut(s)	78, 87, 179
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	235, 257
CciI	TCATGA	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	185, 200
CviAII	CATG	3 cut(s)	35, 206, 239
CviJI	RGCY	6 cut(s)	17, 82, 146, 175, 228, 248
CviKI_1	RGCY	6 cut(s)	17, 82, 146, 175, 228, 248
DdeI	CTNAG	3 cut(s)	78, 87, 179
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraI	TTTAAA	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	185, 200
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	3 cut(s)	38, 209, 242
FatI	CATG	3 cut(s)	34, 205, 238
FauNDI	CATATG	2 cut(s)	12, 254
Fnu4HI	GCNGC	2 cut(s)	246, 249
Fsp4HI	GCNGC	2 cut(s)	246, 249
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	246, 249
Hin1II	CATG	3 cut(s)	38, 209, 242
HindIII	AAGCTT	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	134, 161, 167
HpyF3I	CTNAG	3 cut(s)	78, 87, 179
Hsp92II	CATG	3 cut(s)	38, 209, 242
Kzo9I	GATC	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	218
LpnPI	CCDG	2 cut(s)	180, 207
Lsp1109I	GCAGC	2 cut(s)	235, 257
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	18
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	149, 235
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	5 cut(s)	14, 61, 97, 186, 213
MseI	TTAA	2 cut(s)	231, 261
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
NdeI	CATATG	2 cut(s)	12, 254
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	38, 209, 242
PagI	TCATGA	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	247, 250
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	185, 200
PstI	CTGCAG	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	231, 261
SatI	GCNGC	2 cut(s)	246, 249
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	185, 200
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	6 cut(s)	25, 53, 148, 230, 250, 270
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	1 cut(s)	132
SgeI	CNNG	8 cut(s)	30, 47, 155, 159, 206, 207, 218, 251
SinI	GGWCC	2 cut(s)	185, 200
Sse9I	AATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	193
TaqI	TCGA	1 cut(s)	99
TasI	AATT	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	231, 261
Tru9I	TTAA	2 cut(s)	231, 261
TseI	GCWGC	2 cut(s)	245, 248
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	185, 200
XapI	RAATTY	1 cut(s)	68
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.