Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

38336305 .. 38339723

Gene Structure 3419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGACGATTACATTGGATGATGTTTTTAATATTTTAGGTATTCCAATTCAGGGTGATTCAATATCTGTACCTGAGGGTGTGCGGTTAGACAAAACTTATTATGCATCTTTACTGTCATCTACACTAGGAGTTACTATAGATGAGGCAAAGAATGAAATGAGTCGATATGGTGGAAATGGGGTAACACTAGAGTGGTTGAGATTAAGATTTCAGAGTGTTTCAGATGATAGTTCTCTTGAATTTATAGAGTTTGCAGCAAGAGGATTCTTGCTATATATATTAGGTTGCACACTTTTTGTGGACAAGACTGGGAATAGGATAAATGTGATTTACCTACATTTTTTACGGGATCTTAATAGGGTTGGTCAGTATGCCTGGGGAGCTGCGGGGTTAGCATTTTTATATCGACAGTTAGGACTTGCATCCAGACTTGGTTGTAGGCAAATTGGGGGTTATTTGACATTGCTTGAGGCTTGGATATATGAGCACTTCCGGAATGTAGTTTCCCCTCATCTTCGTGTTGAATATTCAAAGAATGAGCCACGAGTGAATCGTTGGGAACCTCGAAAAGATGCAGGTTTGTCACTAGTGTACGTGCAAGCTCTTCGCCAACAGCTTGATCATATGCAGGCGCACAAGGATCCATATCGTGGTCATAGGGAGGCTCATCCATTATTGGAAATCACATTTTACACAGGAATGCTTAAGTGTTTAGATATTGTGGAACCATATTATCCTGATAGAGTTCTAAGACAATTTGGTCGAGTTCAAACAATTCCTCGCAACCCTTACACCCCTTCTCGTGTTCGACGAGTTTCTGATTCCAAATCATACAAGGTTGTGTATGAGTACTTTGATGGATTGTGGCAAAGATGGCGAGATCACGTGTTAGCAGATGCGAACCGAAGCACTCCAGTTAAGTTTTCATATGACTGCACTCCAGAATACTTATCGTGGTACCAAAAGATCACACATCCCTATGTTCAACACCCTGATCGGGTGTCTGCTGCAGTTGATTCAAACGAGGAAAATCATCCTTTACAGTGTATATCACGGGTATTGTGTATCAGTCAATCTATTGTTGATGTTGGCCGAGATAATGCTATAAGACAACCAATGACGCTATATGAGGCAATTGAAAGCATTCTTACATATACTATTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

388

Amino Acids

44.91

Weight (kDa)

8.11

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	1 - 321	2.2e-51	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	759
Acc36I	ACCTGC	1 cut(s)	566
Acc65I	GGTACC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	957
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	2 cut(s)	82, 386
AclWI	GGATC	3 cut(s)	357, 635, 648
AcoI	YGGCCR	1 cut(s)	1090
AcsI	RAATTY	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	886
AfaI	GTAC	4 cut(s)	69, 593, 851, 959
AfiI	CCNNNNNNNGG	3 cut(s)	50, 650, 997
AflII	CTTAAG	1 cut(s)	704
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	8 cut(s)	60, 239, 524, 531, 770, 986, 1020, 1139
AhlI	ACTAGT	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	374
AleI	CACNNNNGTG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	383, 602, 616
AluI	AGCT	3 cut(s)	383, 602, 616
Alw21I	GWGCWC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	357, 635, 648
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	1 cut(s)	1090
ApeKI	GCWGC	3 cut(s)	254, 383, 1007
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	1143
Asp718I	GGTACC	1 cut(s)	957
AspLEI	GCGC	1 cut(s)	634
AsuHPI	GGTGA	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	957
BauI	CACGAG	2 cut(s)	543, 801
BbrPI	CACGTG	1 cut(s)	886
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	266, 370, 994
BccI	CCATC	2 cut(s)	851, 867
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	619
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	3 cut(s)	125, 188, 587
BfmI	CTRYAG	2 cut(s)	135, 1008
BfrI	CTTAAG	1 cut(s)	704
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	3 cut(s)	255, 384, 1008
BlsI	GCNGC	3 cut(s)	256, 385, 1009
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	1 cut(s)	376
BmiI	GGNNCC	4 cut(s)	561, 642, 726, 959
BmrFI	CCNGG	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	4 cut(s)	113, 431, 562, 886
BmuI	ACTGGG	1 cut(s)	318
BpmI	CTGGAG	2 cut(s)	897, 924
BpuEI	CTTGAG	1 cut(s)	488
BsaAI	YACGTR	2 cut(s)	595, 886
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 650, 997
Bse1I	ACTGG	2 cut(s)	313, 914
Bse21I	CCTNAGG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	5 cut(s)	22, 422, 667, 973, 1033
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	50, 650, 997
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	313, 914
BseXI	GCAGC	3 cut(s)	266, 370, 994
BsgI	GTGCAG	1 cut(s)	919
BshFI	GGCC	1 cut(s)	1092
BshNI	GGYRCC	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	50, 650, 997
BsmI	GAATGC	2 cut(s)	705, 1143
BsnI	GGCC	1 cut(s)	1092
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp13I	TCCGGA	1 cut(s)	492
Bsp143I	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
BspACI	CCGC	2 cut(s)	82, 386
BspANI	GGCC	1 cut(s)	1092
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	492
BspLI	GGNNCC	4 cut(s)	561, 642, 726, 959
BspMAI	CTGCAG	1 cut(s)	1012
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	3 cut(s)	357, 635, 648
BspQI	GCTCTTC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	957
BspTI	CTTAAG	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	313, 914
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
BssSI	CACGAG	2 cut(s)	543, 801
Bst2BI	CACGAG	2 cut(s)	543, 801
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	3 cut(s)	114, 411, 1044
Bst6I	CTCTTC	1 cut(s)	609
BstAFI	CTTAAG	1 cut(s)	704
BstBAI	YACGTR	2 cut(s)	595, 886
BstC8I	GCNNGC	2 cut(s)	600, 630
BstDEI	CTNAG	2 cut(s)	72, 749
BstF5I	GGATG	5 cut(s)	22, 422, 667, 973, 1033
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	6 cut(s)	352, 622, 643, 883, 969, 997
BstMBI	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 392, 874
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	2 cut(s)	135, 1008
BstV1I	GCAGC	3 cut(s)	266, 370, 994
BstX2I	RGATCY	2 cut(s)	349, 640
BstYI	RGATCY	2 cut(s)	349, 640
Bsu36I	CCTNAGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	1092
BtsCI	GGATG	5 cut(s)	22, 422, 667, 973, 1033
BtsIMutI	CAGTG	1 cut(s)	1049
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	600, 630
CfoI	GCGC	1 cut(s)	634
CseI	GACGC	1 cut(s)	1129
Csp6I	GTAC	4 cut(s)	68, 592, 850, 958
CviJI	RGCY	7 cut(s)	383, 473, 541, 602, 616, 665, 1092
CviKI_1	RGCY	7 cut(s)	383, 473, 541, 602, 616, 665, 1092
CviQI	GTAC	4 cut(s)	68, 592, 850, 958
DdeI	CTNAG	2 cut(s)	72, 749
DpnI	GATC	6 cut(s)	351, 621, 642, 882, 968, 996
DpnII	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
DrdI	GACNNNNNNGTC	1 cut(s)	759
DseDI	GACNNNNNNGTC	1 cut(s)	759
EaeI	YGGCCR	1 cut(s)	1090
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco72I	CACGTG	1 cut(s)	886
Eco81I	CCTNAGG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	106
FauI	CCCGC	1 cut(s)	379
FauNDI	CATATG	2 cut(s)	624, 928
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	3 cut(s)	255, 384, 1008
FokI	GGATG	5 cut(s)	29, 409, 654, 960, 1020
Fsp4HI	GCNGC	3 cut(s)	255, 384, 1008
FspBI	CTAG	3 cut(s)	125, 188, 587
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	3 cut(s)	255, 384, 1008
GsuI	CTGGAG	2 cut(s)	897, 924
HaeIII	GGCC	1 cut(s)	1092
HapII	CCGG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	1129
HhaI	GCGC	1 cut(s)	634
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HinfI	GANTC	6 cut(s)	56, 160, 264, 550, 821, 1016
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	301, 592
Hpy188I	TCNGA	3 cut(s)	213, 223, 820
Hpy188III	TCNNGA	5 cut(s)	236, 426, 493, 737, 941
Hpy8I	GTNNAC	2 cut(s)	301, 592
Hpy99I	CGWCG	1 cut(s)	813
HpyAV	CCTTC	1 cut(s)	807
HpyCH4III	ACNGT	3 cut(s)	114, 411, 1044
HpyCH4IV	ACGT	2 cut(s)	594, 885
HpyCH4V	TGCA	9 cut(s)	104, 254, 288, 422, 575, 598, 628, 936, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 392, 874
HpyF3I	CTNAG	2 cut(s)	72, 749
HpySE526I	ACGT	2 cut(s)	594, 885
HspAI	GCGC	1 cut(s)	632
Kpn2I	TCCGGA	1 cut(s)	492
KpnI	GGTACC	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	266, 370, 994
LweI	GCATC	4 cut(s)	113, 431, 562, 886
MaeI	CTAG	3 cut(s)	125, 188, 587
MaeII	ACGT	2 cut(s)	594, 885
MaeIII	GTNAC	3 cut(s)	130, 181, 582
MalI	GATC	6 cut(s)	351, 621, 642, 882, 968, 996
MboI	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
MboII	GAAGA	2 cut(s)	506, 596
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	2 cut(s)	349, 640
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	6 cut(s)	45, 239, 444, 755, 774, 1134
MlyI	GAGTC	1 cut(s)	169
Mph1103I	ATGCAT	1 cut(s)	106
MroI	TCCGGA	1 cut(s)	492
MroXI	GAANNNNTTC	1 cut(s)	1143
MseI	TTAA	5 cut(s)	27, 203, 354, 705, 918
MslI	CAYNNNNRTG	4 cut(s)	190, 516, 698, 978
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	1134
Mva1269I	GAATGC	2 cut(s)	705, 1143
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	3 cut(s)	380, 392, 874
NdeI	CATATG	2 cut(s)	624, 928
NdeII	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
NlaIV	GGNNCC	4 cut(s)	561, 642, 726, 959
NmeAIII	GCCGAG	1 cut(s)	1118
NmuCI	GTSAC	1 cut(s)	582
NsiI	ATGCAT	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	2 cut(s)	550, 808
PctI	GAATGC	2 cut(s)	705, 1143
PdmI	GAANNNNTTC	1 cut(s)	1143
PfeI	GAWTC	5 cut(s)	56, 264, 550, 821, 1016
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	3 cut(s)	256, 385, 1009
PleI	GAGTC	1 cut(s)	168
PmaCI	CACGTG	1 cut(s)	886
PmlI	CACGTG	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	168
Ppu21I	YACGTR	2 cut(s)	595, 886
Psp6I	CCWGG	1 cut(s)	374
PspCI	CACGTG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	4 cut(s)	561, 642, 726, 959
PstI	CTGCAG	1 cut(s)	1012
PsuI	RGATCY	2 cut(s)	349, 640
RsaI	GTAC	4 cut(s)	69, 593, 851, 959
RsaNI	GTAC	4 cut(s)	68, 592, 850, 958
RseI	CAYNNNNRTG	4 cut(s)	190, 516, 698, 978
SapI	GCTCTTC	1 cut(s)	609
SaqAI	TTAA	5 cut(s)	27, 203, 354, 705, 918
SatI	GCNGC	3 cut(s)	255, 384, 1008
Sau3AI	GATC	6 cut(s)	349, 619, 640, 880, 966, 994
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	4 cut(s)	113, 431, 562, 886
SfcI	CTRYAG	2 cut(s)	135, 1008
SmiMI	CAYNNNNRTG	4 cut(s)	190, 516, 698, 978
SmlI	CTYRAG	2 cut(s)	467, 704
SmoI	CTYRAG	2 cut(s)	467, 704
SpeI	ACTAGT	1 cut(s)	586
Sse9I	AATT	6 cut(s)	45, 239, 444, 755, 774, 1134
SsiI	CCGC	2 cut(s)	82, 386
SspI	AATATT	2 cut(s)	31, 527
SspMI	CTAG	3 cut(s)	125, 188, 587
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	3 cut(s)	114, 411, 1044
TaiI	ACGT	2 cut(s)	597, 888
TaqI	TCGA	5 cut(s)	163, 406, 565, 763, 808
TasI	AATT	6 cut(s)	45, 239, 444, 755, 774, 1134
TatI	WGTACW	1 cut(s)	849
TfiI	GAWTC	5 cut(s)	56, 264, 550, 821, 1016
Tru1I	TTAA	5 cut(s)	27, 203, 354, 705, 918
Tru9I	TTAA	5 cut(s)	27, 203, 354, 705, 918
TscAI	CASTG	1 cut(s)	1049
TseFI	GTSAC	1 cut(s)	582
TseI	GCWGC	3 cut(s)	254, 383, 1007
Tsp45I	GTSAC	1 cut(s)	582
TspDTI	ATGAA	2 cut(s)	168, 915
TspRI	CASTG	1 cut(s)	1049
Van91I	CCANNNNNTGG	1 cut(s)	650
Vha464I	CTTAAG	1 cut(s)	704
XapI	RAATTY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	1143
XspI	CTAG	3 cut(s)	125, 188, 587
ZrmI	AGTACT	1 cut(s)	851
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.