Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Forward (+)

26833940 .. 26852764

Gene Structure 18825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGATCCAGAACGACACCTTATTAGTCCAAAGTAATTGTAAAGGTGCTTCCGTGCTATTATTCAATCTACTAGTTCTGAATTTTGATTCCATCAAGAGGAATGACGCCACTGGGCAACCGGCTATTGCAACTACTGGAGGTTCCAGCATAACAATAGCTTTGGATAAACTTAATATTCCTATGGCTGAGGTCGTCTATAAGATGCCCTATACGTTAGATGATGGAGCAGTTACGCTTGGATCAAAGAAGACCACTATCTCTGTTGAGTCCGATAGCCACAGACAACGGATAATAAGTTGGATTGATGGCACAGGACAGCTATCAGCTACATTTGACTTCACAACCAAGGGAGTTCTTCAGGATTTGAATCTCGGTATGGCTAGAGGTTCCAAACACCACGATTGCCCCATAACCTCAAAGACAAAAAGAAAATTTTGTTCTCAACCTTCTCCGTCAGTAGTGGATGATGGTATACTAGAGGCTGGGGTTGATACTGGGGAAGAACAAGCTTCTGAACCCTTTATAGATGCAGATGAACCTCTAAGTGGTCCATTTCTGGGAGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCTATATGGTTGAATAAGGATCTTAATAGGGTTGGTCGGTATGCCTGGGGAGTTGCAGTGTTATCATTTTTATATCGACAGTTAGGACTTGCATCTAGAGTTGGTTGTAGGAAAATTGGGTGTTATTTGACATTGCTTGAGGCTTGGATATATGAGCACTTCCGGAATGTAGTTTCCCCTCATCTTCGTGTTGAATATTCAGAAAATGAGCCACGAGTGAATCATTGGGAACCTCGAAAGATGCAGGTTTGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

290

Amino Acids

31.97

Weight (kDa)

6.5

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	208 - 286	4.4e-14	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	850
AccI	GTMKAC	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	777
AclWI	GGATC	3 cut(s)	250, 569, 642
AcsI	RAATTY	2 cut(s)	82, 434
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	99, 548, 560
AgsI	TTSAA	5 cut(s)	67, 370, 589, 628, 809
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	6 cut(s)	161, 322, 329, 512, 594, 614
AluI	AGCT	6 cut(s)	161, 322, 329, 512, 594, 614
Alw21I	GWGCWC	1 cut(s)	774
AlwI	GGATC	3 cut(s)	250, 569, 642
Aor13HI	TCCGGA	1 cut(s)	777
ApeKI	GCWGC	2 cut(s)	611, 614
ApoI	RAATTY	2 cut(s)	82, 434
AspS9I	GGNCC	2 cut(s)	551, 566
AvaII	GGWCC	2 cut(s)	551, 566
BarI	GAAGNNNNNNTAC	2 cut(s)	34, 66
BauI	CACGAG	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	601, 623
BccI	CCATC	5 cut(s)	101, 218, 302, 464, 586
BciT130I	CCWGG	1 cut(s)	661
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	5 cut(s)	74, 384, 479, 711, 871
BfuAI	ACCTGC	1 cut(s)	850
BisI	GCNGC	2 cut(s)	612, 615
BlsI	GCNGC	2 cut(s)	613, 616
Bme1390I	CCNGG	1 cut(s)	661
Bme18I	GGWCC	2 cut(s)	551, 566
BmgT120I	GGNCC	2 cut(s)	551, 566
BmiI	GGNNCC	3 cut(s)	145, 391, 846
BmrFI	CCNGG	1 cut(s)	661
BmrI	ACTGGG	2 cut(s)	123, 507
BmsI	GCATC	4 cut(s)	195, 520, 716, 846
BmuI	ACTGGG	2 cut(s)	123, 507
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	773
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	348, 660
BsaWI	WCCGGW	1 cut(s)	777
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 548, 560
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	3 cut(s)	118, 142, 502
Bse3DI	GCAATG	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	348, 660
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	99, 548, 560
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	3 cut(s)	118, 142, 502
BseXI	GCAGC	2 cut(s)	601, 623
BseYI	CCCAGC	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	774
BsiSI	CCGG	2 cut(s)	122, 778
BslI	CCNNNNNNNGG	3 cut(s)	99, 548, 560
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp13I	TCCGGA	1 cut(s)	777
Bsp143I	GATC	4 cut(s)	6, 242, 574, 634
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	777
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	3 cut(s)	145, 391, 846
BspMI	ACCTGC	1 cut(s)	850
BspPI	GGATC	3 cut(s)	250, 569, 642
BspQI	GCTCTTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	746
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	118, 142, 502
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	348, 660
BssMI	GATC	4 cut(s)	6, 242, 574, 634
BssNAI	GTATAC	1 cut(s)	476
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	476
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	1 cut(s)	696
Bst6I	CTCTTC	1 cut(s)	584
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	189, 545
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	4 cut(s)	9, 245, 577, 637
BstMBI	GATC	4 cut(s)	6, 242, 574, 634
BstNI	CCWGG	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	659
BstV1I	GCAGC	2 cut(s)	601, 623
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	2 cut(s)	6, 634
BstYI	RGATCY	2 cut(s)	6, 634
BstZ17I	GTATAC	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	111, 678
BveI	ACCTGC	1 cut(s)	850
CciI	TCATGA	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	551, 566
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	572, 605
DdeI	CTNAG	2 cut(s)	189, 545
DpnI	GATC	4 cut(s)	8, 244, 576, 636
DpnII	GATC	4 cut(s)	6, 242, 574, 634
DraI	TTTAAA	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	551, 566
Eco57I	CTGAAG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	575, 608
FatI	CATG	2 cut(s)	571, 604
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	612, 615
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	612, 615
FspBI	CTAG	5 cut(s)	74, 384, 479, 711, 871
GluI	GCNGC	2 cut(s)	612, 615
GsaI	CCCAGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	159
HapII	CCGG	2 cut(s)	122, 778
HgaI	GACGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	575, 608
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	4 cut(s)	89, 269, 370, 835
HpaII	CCGG	2 cut(s)	122, 778
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	4 cut(s)	81, 274, 517, 817
Hpy188III	TCNNGA	6 cut(s)	10, 97, 362, 572, 711, 778
Hpy8I	GTNNAC	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	1 cut(s)	696
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	131, 533, 671, 707, 859
HpyF3I	CTNAG	2 cut(s)	189, 545
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	575, 608
Kpn2I	TCCGGA	1 cut(s)	777
Kzo9I	GATC	4 cut(s)	6, 242, 574, 634
LguI	GCTCTTC	1 cut(s)	584
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	2 cut(s)	601, 623
LweI	GCATC	4 cut(s)	195, 520, 716, 846
MaeI	CTAG	5 cut(s)	74, 384, 479, 711, 871
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	232, 866
MalI	GATC	4 cut(s)	8, 244, 576, 636
MboI	GATC	4 cut(s)	6, 242, 574, 634
MboII	GAAGA	5 cut(s)	262, 350, 515, 601, 791
MflI	RGATCY	2 cut(s)	6, 634
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	4 cut(s)	37, 82, 434, 729
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	281
MroI	TCCGGA	1 cut(s)	777
MseI	TTAA	3 cut(s)	174, 597, 639
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	2 cut(s)	122, 778
MspR9I	CCNGG	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	661
NdeII	GATC	4 cut(s)	6, 242, 574, 634
NlaIII	CATG	2 cut(s)	575, 608
NlaIV	GGNNCC	3 cut(s)	145, 391, 846
NmuCI	GTSAC	1 cut(s)	866
PagI	TCATGA	1 cut(s)	571
PciSI	GCTCTTC	1 cut(s)	584
PfeI	GAWTC	3 cut(s)	89, 370, 835
PkrI	GCNGC	2 cut(s)	613, 616
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	3 cut(s)	145, 391, 846
PspPI	GGNCC	2 cut(s)	551, 566
PspPPI	RGGWCCY	1 cut(s)	566
PsuI	RGATCY	2 cut(s)	6, 634
PvuII	CAGCTG	1 cut(s)	614
RseI	CAYNNNNRTG	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	174, 597, 639
SatI	GCNGC	2 cut(s)	612, 615
Sau3AI	GATC	4 cut(s)	6, 242, 574, 634
Sau96I	GGNCC	2 cut(s)	551, 566
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	661
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	4 cut(s)	195, 520, 716, 846
SinI	GGWCC	2 cut(s)	551, 566
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	4 cut(s)	37, 82, 434, 729
SspI	AATATT	2 cut(s)	178, 812
SspMI	CTAG	5 cut(s)	74, 384, 479, 711, 871
StyD4I	CCNGG	1 cut(s)	659
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	696
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	691, 850
TasI	AATT	4 cut(s)	37, 82, 434, 729
TfiI	GAWTC	3 cut(s)	89, 370, 835
Tru1I	TTAA	3 cut(s)	174, 597, 639
Tru9I	TTAA	3 cut(s)	174, 597, 639
TscAI	CASTG	2 cut(s)	118, 678
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	2 cut(s)	611, 614
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	3 cut(s)	43, 304, 444
TspRI	CASTG	2 cut(s)	118, 678
VpaK11BI	GGWCC	2 cut(s)	551, 566
XapI	RAATTY	2 cut(s)	82, 434
XbaI	TCTAGA	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	475
XspI	CTAG	5 cut(s)	74, 384, 479, 711, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.