Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

34916609 .. 34920423

Gene Structure 3815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTAGAGGTCATAAACACCATGATTGCCCCACAACCTCAAAGACAAAAAGGAAATTTTGTTCTCAACCTTCTCAGTCAGAAGTAGATGAGGGTGTTATAGATGATGGGGTTGATACTGCAGAAGAACAAGCTTGTGAACCATTTGCAGATGTAGATGAGCCTCTAAGTGGTCCATTTCCTGGTGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCCATATGGTTTAATAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

86

Amino Acids

9.33

Weight (kDa)

5.37

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	182
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	170, 182
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	181
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
AluBI	AGCT	3 cut(s)	134, 216, 236
AluI	AGCT	3 cut(s)	134, 216, 236
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	233, 236
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	173, 188
AvaII	GGWCC	2 cut(s)	173, 188
BbvI	GCAGC	2 cut(s)	223, 245
BccI	CCATC	2 cut(s)	101, 208
BciT130I	CCWGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	234, 237
BlsI	GCNGC	2 cut(s)	235, 238
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	173, 188
BmgT120I	GGNCC	2 cut(s)	173, 188
BmrFI	CCNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 182
BseBI	CCWGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	170, 182
BseMII	CTCAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	223, 245
BslI	CCNNNNNNNGG	2 cut(s)	170, 182
Bsp143I	GATC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	206
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	75, 167
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	223, 245
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	173, 188
CviAII	CATG	3 cut(s)	23, 194, 227
CviJI	RGCY	5 cut(s)	5, 134, 163, 216, 236
CviKI_1	RGCY	5 cut(s)	5, 134, 163, 216, 236
DdeI	CTNAG	2 cut(s)	75, 167
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco47I	GGWCC	2 cut(s)	173, 188
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	26, 197, 230
FaiI	YATR	8 cut(s)	15, 24, 101, 195, 228, 242, 244, 259
FatI	CATG	3 cut(s)	22, 193, 226
FauNDI	CATATG	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	234, 237
Fsp4HI	GCNGC	2 cut(s)	234, 237
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	234, 237
Hin1II	CATG	3 cut(s)	26, 197, 230
HindIII	AAGCTT	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	122, 149
HpyF3I	CTNAG	2 cut(s)	75, 167
Hsp92II	CATG	3 cut(s)	26, 197, 230
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	206
LpnPI	CCDG	2 cut(s)	168, 195
Lsp1109I	GCAGC	2 cut(s)	223, 245
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	137, 223
MluCI	AATT	1 cut(s)	56
MnlI	CCTC	4 cut(s)	49, 85, 174, 201
MseI	TTAA	2 cut(s)	219, 249
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	26, 197, 230
PagI	TCATGA	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	235, 238
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	173, 188
PstI	CTGCAG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	219, 249
SatI	GCNGC	2 cut(s)	234, 237
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	173, 188
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	7 cut(s)	13, 41, 73, 136, 218, 238, 258
SfcI	CTRYAG	1 cut(s)	120
SgeI	CNNG	8 cut(s)	18, 35, 143, 147, 194, 195, 206, 239
SinI	GGWCC	2 cut(s)	173, 188
Sse9I	AATT	1 cut(s)	56
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	181
TasI	AATT	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	219, 249
Tru9I	TTAA	2 cut(s)	219, 249
TseI	GCWGC	2 cut(s)	233, 236
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	173, 188
XapI	RAATTY	1 cut(s)	56
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.