Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

60107200 .. 60107970

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAGACACACGAGGTCATATGGGATCCATATCGTGGTCATAGGGATGCTCATCCATTATTGGAAATCACATTTTACACAGGAATGCTTAAGGTTCTAAGACAATTTGGTCGAGTTCAAACAATTCCTTGCAACCCTTACACCCCATCTCGTGTTCGACGAGTTTCTGATTCCAAATCATACAAGGTTGTGTATGAGTACTTCGATGGATTGTGGCAAAGATGGCGAGATCACGTGTTAGCAGATGCCAACCGAAGCACTCCAGTTAAGTTTTCATATGACTGCACTCCAGAATACTTATCGTGGTACCAAAAGATCACACATCCCTATGTTCAACACCCTGATCGGGTGTCTGCTGCAGTTGATTCAAATGAGGAAAATCATCCATTACAGCGTATATTACGGGCATTGTGTATCACTCAATCTATTGTTGATGTTGGCCGAGATGATGCTATAAGACAACCAATGAAGCTATATGAGGCAATTGAAAGCATCCAACATATACTATTAGGTGACCTAGTGCAAAATACACGCACATATCAACGTCGGCGGCGTGTACAAAATAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

191

Amino Acids

22.59

Weight (kDa)

8.97

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	35
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	2 cut(s)	20, 33
AcoI	YGGCCR	1 cut(s)	439
AcvI	CACGTG	1 cut(s)	235
AfaI	GTAC	3 cut(s)	200, 308, 558
AfiI	CCNNNNNNNGG	2 cut(s)	35, 346
AflII	CTTAAG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	119, 335, 369, 488
AluBI	AGCT	1 cut(s)	472
AluI	AGCT	1 cut(s)	472
AlwI	GGATC	2 cut(s)	20, 33
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	356
Asp718I	GGTACC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	306
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BauI	CACGAG	2 cut(s)	11, 150
BbrPI	CACGTG	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	3 cut(s)	154, 200, 216
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	357, 551
BlsI	GCNGC	2 cut(s)	358, 552
BmcAI	AGTACT	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	27, 308
BmsI	GCATC	4 cut(s)	37, 235, 439, 501
BpmI	CTGGAG	2 cut(s)	246, 273
BsaAI	YACGTR	1 cut(s)	235
BsaBI	GATNNNNATC	2 cut(s)	30, 51
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 346
Bse1I	ACTGG	1 cut(s)	263
Bse8I	GATNNNNATC	2 cut(s)	30, 51
BseGI	GGATG	5 cut(s)	52, 52, 322, 382, 492
BseJI	GATNNNNATC	2 cut(s)	30, 51
BseLI	CCNNNNNNNGG	2 cut(s)	35, 346
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	35, 346
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	441
Bsp1407I	TGTACA	1 cut(s)	556
Bsp143I	GATC	4 cut(s)	25, 229, 315, 343
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	27, 308
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	2 cut(s)	20, 33
BspT107I	GGYRCC	1 cut(s)	306
BspTI	CTTAAG	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	4 cut(s)	25, 229, 315, 343
BssSI	CACGAG	2 cut(s)	11, 150
Bst2BI	CACGAG	2 cut(s)	11, 150
BstAFI	CTTAAG	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	556
BstBAI	YACGTR	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	98
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	5 cut(s)	52, 52, 322, 382, 492
BstKTI	GATC	4 cut(s)	28, 232, 318, 346
BstMBI	GATC	4 cut(s)	25, 229, 315, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstPI	GGTNACC	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	441
BtsCI	GGATG	5 cut(s)	52, 52, 322, 382, 492
Csp6I	GTAC	3 cut(s)	199, 307, 557
CviJI	RGCY	2 cut(s)	441, 472
CviKI_1	RGCY	2 cut(s)	441, 472
CviQI	GTAC	3 cut(s)	199, 307, 557
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	4 cut(s)	27, 231, 317, 345
DpnII	GATC	4 cut(s)	25, 229, 315, 343
DrdI	GACNNNNNNGTC	1 cut(s)	108
DseDI	GACNNNNNNGTC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	439
Eco72I	CACGTG	1 cut(s)	235
Eco91I	GGTNACC	1 cut(s)	512
EcoO65I	GGTNACC	1 cut(s)	512
FauNDI	CATATG	2 cut(s)	20, 277
Fnu4HI	GCNGC	2 cut(s)	357, 551
FokI	GGATG	5 cut(s)	39, 59, 309, 369, 479
Fsp4HI	GCNGC	2 cut(s)	357, 551
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	2 cut(s)	357, 551
GsuI	CTGGAG	2 cut(s)	246, 273
HaeIII	GGCC	1 cut(s)	441
HinfI	GANTC	2 cut(s)	170, 365
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	557
Hpy99I	CGWCG	2 cut(s)	162, 549
HpyCH4IV	ACGT	2 cut(s)	234, 544
HpyCH4V	TGCA	5 cut(s)	4, 132, 285, 359, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	234, 544
KpnI	GGTACC	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	25, 229, 315, 343
LpnPI	CCDG	4 cut(s)	66, 276, 303, 354
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	4 cut(s)	37, 235, 439, 501
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	2 cut(s)	234, 544
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	27, 231, 317, 345
MboI	GATC	4 cut(s)	25, 229, 315, 343
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	3 cut(s)	104, 123, 483
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	3 cut(s)	7, 367, 472
MseI	TTAA	2 cut(s)	90, 267
MslI	CAYNNNNRTG	3 cut(s)	45, 83, 327
MspCI	CTTAAG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	223
NdeI	CATATG	2 cut(s)	20, 277
NdeII	GATC	4 cut(s)	25, 229, 315, 343
NlaIV	GGNNCC	2 cut(s)	27, 308
NmeAIII	GCCGAG	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	2 cut(s)	157, 550
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	170, 365
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	358, 552
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	27, 308
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	200, 308, 558
RsaNI	GTAC	3 cut(s)	199, 307, 557
RseI	CAYNNNNRTG	3 cut(s)	45, 83, 327
SaqAI	TTAA	2 cut(s)	90, 267
SatI	GCNGC	2 cut(s)	357, 551
Sau3AI	GATC	4 cut(s)	25, 229, 315, 343
ScaI	AGTACT	1 cut(s)	200
SetI	ASST	8 cut(s)	18, 96, 189, 237, 474, 514, 519, 547
SfaNI	GCATC	4 cut(s)	37, 235, 439, 501
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	3 cut(s)	45, 83, 327
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	104, 123, 483
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	1 cut(s)	518
TaiI	ACGT	2 cut(s)	237, 547
TaqI	TCGA	3 cut(s)	112, 157, 204
TasI	AATT	3 cut(s)	104, 123, 483
TatI	WGTACW	2 cut(s)	198, 556
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	2 cut(s)	170, 365
Tru1I	TTAA	2 cut(s)	90, 267
Tru9I	TTAA	2 cut(s)	90, 267
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	264, 482
Van91I	CCANNNNNTGG	1 cut(s)	35
Vha464I	CTTAAG	1 cut(s)	89
XspI	CTAG	1 cut(s)	518
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.