RLG00000029816

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001683
Physical Location & Seq
Reverse (-)
49660347 .. 49663163
2817 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029816

Sequence Viewer

Length: 708 bp
ATGAAAAGACCATTGTCTTTCACTCTAAAATCTAGCAATGACCCCATATCAGAAGTAGATGATGGGGTTGATACTGCAGAAGAACAAGCTTCCGAACCATTTACAGATCCAGATAAGCCTCTAAGTGGTCCATTTCCTGGTGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGTAGCTACTATATGGTTTAATAAGATAAATGAGAGTCCAATTCATGAACGTGATCCTTTAAAACTTCAAAACCATTCATGTAAGCTCACACAATGGGTCATATGGGATCCCTACCGTGGTCATAGGGAGGCTCATCCATTATTAGAAATCACATTTTACACAGGAATGCTTAAGTGTTTGGATATTGTGGAACCATTTTATCCTGACAGGGTTCTAAGACAATTTAGTCGAGTTCAAACAATTCCTCGCTACCCTTACACCTCTTCACGTGTTGTATATGAGTACTTTGATGGGTTGTGGCAAAATTGGCGAGATCACGTGTTAGCAGATGACAACCGAAGCATTCCAGTTAAGTTTTCATATGACTGCACTTCAGATTACTTATCGTGGCACCAAAAGATCACACATCCGTATCGAATATCACAGGCATTGTATATCACTCACTTTATTGTTGATGTTGTCCAAGATGATGCTATAAGACAACCAATGAGGCTATTGAAAGCATCCAACATATATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

236

Amino Acids

27.53

Weight (kDa)

6.19

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 93 - 193 3.6e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 576
AccB7I CCANNNNNTGG 1 cut(s) 137
AclWI GGATC 5 cut(s) 101, 146, 233, 287, 300
AcuI CTGAAG 1 cut(s) 543
AcvI CACGTG 2 cut(s) 455, 505
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 3 cut(s) 125, 137, 302
AflII CTTAAG 1 cut(s) 356
AflIII ACRYGT 2 cut(s) 454, 504
AgsI TTSAA 4 cut(s) 166, 254, 422, 685
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 4 cut(s) 89, 171, 191, 271
AluI AGCT 4 cut(s) 89, 171, 191, 271
AlwI GGATC 5 cut(s) 101, 146, 233, 287, 300
AspS9I GGNCC 2 cut(s) 128, 143
AvaII GGWCC 2 cut(s) 128, 143
BaeI ACNNNNGTAYC 2 cut(s) 581, 614
BamHI GGATCC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 576
BbrPI CACGTG 2 cut(s) 455, 505
BccI CCATC 3 cut(s) 56, 163, 470
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 2 cut(s) 33, 706
BfmI CTRYAG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 356
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 2 cut(s) 128, 143
BmgT120I GGNCC 2 cut(s) 128, 143
BmiI GGNNCC 3 cut(s) 294, 378, 578
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 646, 698
BoxI GACNNNNGTC 1 cut(s) 13
BsaAI YACGTR 2 cut(s) 455, 505
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 137, 302
Bse1I ACTGG 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 3 cut(s) 319, 592, 689
BseLI CCNNNNNNNGG 3 cut(s) 125, 137, 302
BseMI GCAATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 533
BsgI GTGCAG 1 cut(s) 538
BshNI GGYRCC 1 cut(s) 576
BslI CCNNNNNNNGG 3 cut(s) 125, 137, 302
BsmI GAATGC 2 cut(s) 357, 528
Bsp143I GATC 6 cut(s) 106, 151, 238, 292, 499, 585
BspHI TCATGA 2 cut(s) 148, 229
BspLI GGNNCC 3 cut(s) 294, 378, 578
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 5 cut(s) 101, 146, 233, 287, 300
BspQI GCTCTTC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 576
BspTI CTTAAG 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 6 cut(s) 106, 151, 238, 292, 499, 585
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 161, 454
BstAFI CTTAAG 1 cut(s) 356
BstBAI YACGTR 2 cut(s) 455, 505
BstDEI CTNAG 2 cut(s) 122, 401
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 319, 592, 689
BstKTI GATC 6 cut(s) 109, 154, 241, 295, 502, 588
BstMBI GATC 6 cut(s) 106, 151, 238, 292, 499, 585
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNI CCWGG 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 106, 292
BstYI RGATCY 2 cut(s) 106, 292
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 319, 592, 689
CciI TCATGA 2 cut(s) 148, 229
Cfr13I GGNCC 2 cut(s) 128, 143
Csp6I GTAC 1 cut(s) 469
CviAII CATG 4 cut(s) 149, 182, 230, 264
CviJI RGCY 7 cut(s) 89, 118, 171, 191, 271, 317, 679
CviKI_1 RGCY 7 cut(s) 89, 118, 171, 191, 271, 317, 679
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 2 cut(s) 122, 401
DpnI GATC 6 cut(s) 108, 153, 240, 294, 501, 587
DpnII GATC 6 cut(s) 106, 151, 238, 292, 499, 585
DraI TTTAAA 2 cut(s) 175, 246
DrdI GACNNNNNNGTC 1 cut(s) 411
DseDI GACNNNNNNGTC 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 161, 454
EarI CTCTTC 2 cut(s) 161, 454
Eco47I GGWCC 2 cut(s) 128, 143
Eco57I CTGAAG 1 cut(s) 543
Eco72I CACGTG 2 cut(s) 455, 505
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 4 cut(s) 152, 185, 233, 267
FatI CATG 4 cut(s) 148, 181, 229, 263
FauNDI CATATG 2 cut(s) 287, 547
FokI GGATG 3 cut(s) 306, 579, 676
FspBI CTAG 2 cut(s) 33, 706
Hin1II CATG 4 cut(s) 152, 185, 233, 267
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 52, 94, 562
Hpy188III TCNNGA 4 cut(s) 110, 149, 230, 389
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 3 cut(s) 235, 454, 504
HpyCH4V TGCA 2 cut(s) 77, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 2 cut(s) 122, 401
HpySE526I ACGT 3 cut(s) 235, 454, 504
Hsp92II CATG 4 cut(s) 152, 185, 233, 267
Kzo9I GATC 6 cut(s) 106, 151, 238, 292, 499, 585
LguI GCTCTTC 1 cut(s) 161
LpnPI CCDG 8 cut(s) 123, 123, 150, 333, 379, 402, 546, 596
LweI GCATC 2 cut(s) 646, 698
MaeI CTAG 2 cut(s) 33, 706
MaeII ACGT 3 cut(s) 235, 454, 504
MalI GATC 6 cut(s) 108, 153, 240, 294, 501, 587
MboI GATC 6 cut(s) 106, 151, 238, 292, 499, 585
MboII GAAGA 3 cut(s) 92, 178, 441
MflI RGATCY 2 cut(s) 106, 292
MluCI AATT 4 cut(s) 225, 407, 426, 490
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 6 cut(s) 129, 156, 307, 441, 457, 669
MseI TTAA 5 cut(s) 174, 204, 245, 357, 537
MslI CAYNNNNRTG 2 cut(s) 234, 350
MspCI CTTAAG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 2 cut(s) 357, 528
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 493
NdeI CATATG 2 cut(s) 287, 547
NdeII GATC 6 cut(s) 106, 151, 238, 292, 499, 585
NlaIII CATG 4 cut(s) 152, 185, 233, 267
NlaIV GGNNCC 3 cut(s) 294, 378, 578
PagI TCATGA 2 cut(s) 148, 229
PciSI GCTCTTC 1 cut(s) 161
PctI GAATGC 2 cut(s) 357, 528
PflMI CCANNNNNTGG 1 cut(s) 137
PleI GAGTC 1 cut(s) 228
PmaCI CACGTG 2 cut(s) 455, 505
PmlI CACGTG 2 cut(s) 455, 505
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 2 cut(s) 455, 505
PshAI GACNNNNGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 136
PspCI CACGTG 2 cut(s) 455, 505
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 3 cut(s) 294, 378, 578
PspPI GGNCC 2 cut(s) 128, 143
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 106, 292
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 2 cut(s) 234, 350
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 5 cut(s) 174, 204, 245, 357, 537
Sau3AI GATC 6 cut(s) 106, 151, 238, 292, 499, 585
Sau96I GGNCC 2 cut(s) 128, 143
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 138
SetI ASST 8 cut(s) 91, 173, 193, 238, 273, 449, 457, 507
SfaNI GCATC 2 cut(s) 646, 698
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 2 cut(s) 128, 143
SmiMI CAYNNNNRTG 2 cut(s) 234, 350
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 225, 407, 426, 490
SspMI CTAG 2 cut(s) 33, 706
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 3 cut(s) 238, 457, 507
TaqI TCGA 2 cut(s) 415, 601
TasI AATT 4 cut(s) 225, 407, 426, 490
TatI WGTACW 1 cut(s) 468
Tru1I TTAA 5 cut(s) 174, 204, 245, 357, 537
Tru9I TTAA 5 cut(s) 174, 204, 245, 357, 537
TspDTI ATGAA 5 cut(s) 17, 218, 246, 252, 534
TspGWI ACGGA 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 137
Vha464I CTTAAG 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 128, 143
XspI CTAG 2 cut(s) 33, 706
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.