Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

6051960 .. 6056288

Gene Structure 4329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTAAAGTGTTTAGATATTGCGGAACCATATTATCCTGATAGGGTTCTAAGACAATTTGGTCGAGTTCAAACAATTCCTTGCAACCCTTACACCCTATCTCATGTTCGACGAGTTTCTGATTCCAAATCGTACAAGGTTGTGTATGAGTACTTTGATGGATTGTGGCAAAGATGGCGAGATCACGTGTTAGCAAATGCCAACCGAAGCACTCCAGTTAAGTTTTCATATGACTGCACTCCAGAATACTTGTCGTGGTACCAAAAGATCACACATCCCTATGTTCAACACCCTGATCGGGTGTCTGCTGCAGTTGATTCAAATGAGGAAAATCATCCATTACAAGTATATATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

119

Amino Acids

14.16

Weight (kDa)

7.74

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	2 - 88	2.1e-11	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	60
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AciI	CCGC	1 cut(s)	23
AcvI	CACGTG	1 cut(s)	187
AfaI	GTAC	3 cut(s)	134, 152, 260
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	71, 287, 321
ApeKI	GCWGC	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	258
BbrPI	CACGTG	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	152, 168
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmcAI	AGTACT	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	27, 260
BpmI	CTGGAG	2 cut(s)	198, 225
BsaAI	YACGTR	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	274, 334
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	181, 267, 295
BspACI	CCGC	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	27, 260
BspMAI	CTGCAG	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	181, 267, 295
BstBAI	YACGTR	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	274, 334
BstKTI	GATC	3 cut(s)	184, 270, 298
BstMBI	GATC	3 cut(s)	181, 267, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	274, 334
Csp6I	GTAC	3 cut(s)	133, 151, 259
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	3 cut(s)	133, 151, 259
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	183, 269, 297
DpnII	GATC	3 cut(s)	181, 267, 295
DrdI	GACNNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	187
FaeI	CATG	1 cut(s)	107
FaiI	YATR	8 cut(s)	31, 105, 147, 229, 231, 282, 349, 351
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	261, 321
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	198, 225
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	2 cut(s)	122, 317
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	38, 242
Hpy99I	CGWCG	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	84, 237, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	181, 267, 295
LpnPI	CCDG	4 cut(s)	51, 228, 255, 306
Lsp1109I	GCAGC	1 cut(s)	295
MaeII	ACGT	1 cut(s)	186
MalI	GATC	3 cut(s)	183, 269, 297
MboI	GATC	3 cut(s)	181, 267, 295
MluCI	AATT	2 cut(s)	56, 75
MnlI	CCTC	1 cut(s)	319
MseI	TTAA	2 cut(s)	219, 358
MslI	CAYNNNNRTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	3 cut(s)	181, 267, 295
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	27, 260
PfeI	GAWTC	2 cut(s)	122, 317
PkrI	GCNGC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	27, 260
PstI	CTGCAG	1 cut(s)	313
RsaI	GTAC	3 cut(s)	134, 152, 260
RsaNI	GTAC	3 cut(s)	133, 151, 259
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	219, 358
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	3 cut(s)	181, 267, 295
ScaI	AGTACT	1 cut(s)	152
SetI	ASST	2 cut(s)	141, 189
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	56, 75
SsiI	CCGC	1 cut(s)	23
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	64, 109
TasI	AATT	2 cut(s)	56, 75
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	122, 317
Tru1I	TTAA	2 cut(s)	219, 358
Tru9I	TTAA	2 cut(s)	219, 358
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.