FvH4_5g13891

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001683
Physical Location & Seq
Forward (+)
7854820 .. 7856927
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13891.t1

Sequence Viewer

Length: 1170 bp
ATGGCCAGAGGTCCTAAACCCCATGAATGTCCCATAACCTCATCGAGAAAAAGAAAATTTTGTTCAACACAACCTTCTCAGTTAGATGTAGATGAAGGTCTTCCAGGGAATGAGATTGACACCGAAGAAGAACAAGTTTCTGAAAAAGATGCAGATGAGCCCCTAAGTGGTCCATTTCCGGGAGGTCCTCATGGTCCATCAGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCTATATGGTTTAATAAGGAACGTGATCCGTTGAAACTTCAGAACCATTCATATAAGCTTACACAATGGGTATTTGATGAAAATGTTGCTAACCATAAGTTTTGGACTTACATTGATGGGTCTGGGTTGAGGCCATTAGTTAGCTGTTCATATTTAATTGGTATTCCAGTTCAGGGTGATTCCATATCTGTACCTGAGGGTGTGCGGTTAAACAAAACGTATTATACATCTTTATTGTCATCTACACTAGGTGTTACTACAGATGAGGCAAAGATTGAAATGAGTCGTTATGGTGGAAATGGGTTAGGACTTGCATCCAGAGTTGGTTGTAGACAAATTGGGGGATACCTGACATTGCTTGAGGCCTGGATATATGAGCACTTTCGGAATGTAGTTTCCCCTCATCTTCGTGTTGAATATTCAGAGAACGAGCCACGAGTGAATCGTTGGGAACCTCGAAAGGATGCAGGTTTGTCACTAGTTTATGTGCAGGCTCTTAGCCAACAGCTTGATCATATGCAGGCACATGAGGTTGTATGGGATCCTTACTGTGGTCATAGGGATTCTCATCCATTATTAGATATTTCATTCTATACAGGGATGCTAAAGTGTTTGGATATTGTTGAACCATATTATCCAGATAGGGTTGTGTACCAGTACTTTGATGGGTTGTGGCAACGATGGCGAGATCATGTGTTGGATGATGCTAACCGAAGTACTCCAGTTAAGTTTTCTTATGACTACACTTCAGAATACTTATCGTGGTATCAAAACATCACACATCCCTATGTTCAACATCCTGATCGGATGTCTGATGCAGTTGATTCAAGTGAGGAAAGTCATCCTTTACAGTGTATATCACGCGCATTGTATGTTACTCAATCTATTGTAGCTGCTGGCCGAGATGATGCTGTTAGGCGGCCAATGATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

390

Amino Acids

44.36

Weight (kDa)

5.67

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 180 - 345 1.3e-17 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 565
AccII CGCG 1 cut(s) 1098
AciI CCGC 2 cut(s) 439, 1153
AclWI GGATC 3 cut(s) 254, 770, 783
AcoI YGGCCR 3 cut(s) 3, 1132, 1154
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 257, 966
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 4 cut(s) 426, 887, 893, 952
AfiI CCNNNNNNNGG 4 cut(s) 167, 179, 407, 785
AgsI TTSAA 8 cut(s) 66, 208, 268, 512, 650, 860, 1028, 1062
AhlI ACTAGT 1 cut(s) 712
AjnI CCWGG 2 cut(s) 103, 599
AluBI AGCT 6 cut(s) 213, 233, 292, 378, 742, 1127
AluI AGCT 6 cut(s) 213, 233, 292, 378, 742, 1127
Alw21I GWGCWC 1 cut(s) 615
AlwI GGATC 3 cut(s) 254, 770, 783
AoxI GGCC 5 cut(s) 3, 365, 597, 1132, 1154
ApeKI GCWGC 3 cut(s) 230, 233, 1127
ApoI RAATTY 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 1100
AspS9I GGNCC 4 cut(s) 11, 170, 185, 194
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 4 cut(s) 11, 170, 185, 194
AxyI CCTNAGG 1 cut(s) 429
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 775
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 669
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 220, 242, 1114
BccI CCATC 4 cut(s) 205, 344, 893, 909
BciT130I CCWGG 2 cut(s) 105, 601
BciVI GTATCC 1 cut(s) 572
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 1 cut(s) 180
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 2 cut(s) 482, 713
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 692
BfuI GTATCC 1 cut(s) 572
BisI GCNGC 4 cut(s) 231, 234, 1128, 1154
BlsI GCNGC 4 cut(s) 232, 235, 1129, 1155
BmcAI AGTACT 2 cut(s) 893, 952
Bme1390I CCNGG 3 cut(s) 105, 180, 601
Bme18I GGWCC 4 cut(s) 11, 170, 185, 194
BmgT120I GGNCC 4 cut(s) 11, 170, 185, 194
BmiI GGNNCC 2 cut(s) 687, 777
BmrFI CCNGG 3 cut(s) 105, 180, 601
BmsI GCATC 7 cut(s) 139, 557, 688, 825, 928, 1039, 1132
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 4 cut(s) 167, 179, 407, 785
Bse1I ACTGG 3 cut(s) 401, 889, 956
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 587
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 105, 601
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 9 cut(s) 548, 703, 802, 840, 940, 1015, 1030, 1047, 1075
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 4 cut(s) 167, 179, 407, 785
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 2 cut(s) 92, 420
BseNI ACTGG 3 cut(s) 401, 889, 956
BseXI GCAGC 3 cut(s) 220, 242, 1114
BsgI GTGCAG 1 cut(s) 743
Bsh1236I CGCG 1 cut(s) 1098
BshFI GGCC 5 cut(s) 5, 367, 599, 1134, 1156
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 4 cut(s) 167, 179, 407, 785
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 5 cut(s) 5, 367, 599, 1134, 1156
Bsp1286I GDGCHC 2 cut(s) 162, 615
Bsp143I GATC 5 cut(s) 259, 745, 775, 922, 1036
BspACI CCGC 2 cut(s) 439, 1153
BspANI GGCC 5 cut(s) 5, 367, 599, 1134, 1156
BspCNI CTCAG 2 cut(s) 91, 421
BspFNI CGCG 1 cut(s) 1098
BspLI GGNNCC 2 cut(s) 687, 777
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 3 cut(s) 254, 770, 783
BspQI GCTCTTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 587
BsrI ACTGG 3 cut(s) 401, 889, 956
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 5 cut(s) 259, 745, 775, 922, 1036
BssSI CACGAG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 105, 601
Bst4CI ACNGT 2 cut(s) 785, 1086
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 3 cut(s) 726, 756, 1132
BstDEI CTNAG 4 cut(s) 78, 164, 429, 731
BstF5I GGATG 9 cut(s) 548, 703, 802, 840, 940, 1015, 1030, 1047, 1075
BstFNI CGCG 1 cut(s) 1098
BstHHI GCGC 1 cut(s) 1100
BstKTI GATC 5 cut(s) 262, 748, 778, 925, 1039
BstMBI GATC 5 cut(s) 259, 745, 775, 922, 1036
BstMWI GCNNNNNNNGC 1 cut(s) 916
BstNI CCWGG 2 cut(s) 105, 601
BstSCI CCNGG 3 cut(s) 103, 178, 599
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 1 cut(s) 1098
BstV1I GCAGC 3 cut(s) 220, 242, 1114
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
Bsu36I CCTNAGG 1 cut(s) 429
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 5 cut(s) 5, 367, 599, 1134, 1156
BtsCI GGATG 9 cut(s) 548, 703, 802, 840, 940, 1015, 1030, 1047, 1075
BtsIMutI CAGTG 1 cut(s) 1091
BveI ACCTGC 1 cut(s) 692
Cac8I GCNNGC 3 cut(s) 726, 756, 1132
CfoI GCGC 1 cut(s) 1100
Cfr13I GGNCC 4 cut(s) 11, 170, 185, 194
Csp6I GTAC 4 cut(s) 425, 886, 892, 951
CviAII CATG 5 cut(s) 23, 191, 224, 761, 926
CviQI GTAC 4 cut(s) 425, 886, 892, 951
DdeI CTNAG 4 cut(s) 78, 164, 429, 731
DpnI GATC 5 cut(s) 261, 747, 777, 924, 1038
DpnII GATC 5 cut(s) 259, 745, 775, 922, 1036
DraI TTTAAA 1 cut(s) 217
DraIII CACNNNGTG 1 cut(s) 485
EaeI YGGCCR 3 cut(s) 3, 1132, 1154
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco147I AGGCCT 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 4 cut(s) 11, 170, 185, 194
Eco57I CTGAAG 2 cut(s) 257, 966
Eco81I CCTNAGG 1 cut(s) 429
EcoO109I RGGNCCY 2 cut(s) 11, 185
EcoRII CCWGG 2 cut(s) 103, 599
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 5 cut(s) 26, 194, 227, 764, 929
FalI AAGNNNNNCTT 2 cut(s) 1063, 1095
FaqI GGGAC 1 cut(s) 15
FatI CATG 5 cut(s) 22, 190, 223, 760, 925
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 1 cut(s) 745
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 4 cut(s) 231, 234, 1128, 1154
FokI GGATG 9 cut(s) 535, 710, 789, 847, 947, 1002, 1017, 1054, 1062
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 231, 234, 1128, 1154
FspBI CTAG 2 cut(s) 482, 713
GlaI GCGC 1 cut(s) 1099
GluI GCNGC 4 cut(s) 231, 234, 1128, 1154
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 5 cut(s) 5, 367, 599, 1134, 1156
HapII CCGG 1 cut(s) 179
HhaI GCGC 1 cut(s) 1100
Hin1II CATG 5 cut(s) 26, 194, 227, 764, 929
Hin6I GCGC 1 cut(s) 1098
HinP1I GCGC 1 cut(s) 1098
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 5 cut(s) 413, 517, 676, 797, 1058
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 566, 886
Hpy188I TCNGA 7 cut(s) 142, 276, 621, 658, 985, 1041, 1048
Hpy188III TCNNGA 4 cut(s) 45, 552, 872, 1034
Hpy8I GTNNAC 2 cut(s) 566, 886
HpyAV CCTTC 2 cut(s) 84, 89
HpyCH4III ACNGT 2 cut(s) 785, 1086
HpyCH4IV ACGT 2 cut(s) 256, 452
HpyCH4V TGCA 6 cut(s) 152, 548, 701, 724, 754, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 916
HpyF3I CTNAG 4 cut(s) 78, 164, 429, 731
HpySE526I ACGT 2 cut(s) 256, 452
Hsp92II CATG 5 cut(s) 26, 194, 227, 764, 929
HspAI GCGC 1 cut(s) 1098
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 5 cut(s) 259, 745, 775, 922, 1036
LguI GCTCTTC 1 cut(s) 203
Lsp1109I GCAGC 3 cut(s) 220, 242, 1114
LweI GCATC 7 cut(s) 139, 557, 688, 825, 928, 1039, 1132
MaeI CTAG 2 cut(s) 482, 713
MaeII ACGT 2 cut(s) 256, 452
MaeIII GTNAC 3 cut(s) 487, 708, 1108
MalI GATC 5 cut(s) 261, 747, 777, 924, 1038
MboI GATC 5 cut(s) 259, 745, 775, 922, 1036
MboII GAAGA 5 cut(s) 92, 137, 140, 220, 632
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 162, 615
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 56, 390, 570
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 912
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 99
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 216, 246, 389, 443, 960
MslI CAYNNNNRTG 2 cut(s) 642, 1020
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 3 cut(s) 105, 180, 601
MvaI CCWGG 2 cut(s) 105, 601
MvnI CGCG 1 cut(s) 1098
MwoI GCNNNNNNNGC 1 cut(s) 916
NciI CCSGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 750
NdeII GATC 5 cut(s) 259, 745, 775, 922, 1036
NlaIII CATG 5 cut(s) 26, 194, 227, 764, 929
NlaIV GGNNCC 2 cut(s) 687, 777
NmeAIII GCCGAG 1 cut(s) 1160
NmuCI GTSAC 1 cut(s) 708
PceI AGGCCT 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 4 cut(s) 413, 676, 797, 1058
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 4 cut(s) 232, 235, 1129, 1155
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PpuMI RGGWCCY 2 cut(s) 11, 185
Psp5II RGGWCCY 2 cut(s) 11, 185
Psp6I CCWGG 2 cut(s) 103, 599
PspGI CCWGG 2 cut(s) 103, 599
PspN4I GGNNCC 2 cut(s) 687, 777
PspPI GGNCC 4 cut(s) 11, 170, 185, 194
PspPPI RGGWCCY 2 cut(s) 11, 185
PsuI RGATCY 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 4 cut(s) 426, 887, 893, 952
RsaNI GTAC 4 cut(s) 425, 886, 892, 951
RseI CAYNNNNRTG 2 cut(s) 642, 1020
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 5 cut(s) 216, 246, 389, 443, 960
SatI GCNGC 4 cut(s) 231, 234, 1128, 1154
Sau3AI GATC 5 cut(s) 259, 745, 775, 922, 1036
Sau96I GGNCC 4 cut(s) 11, 170, 185, 194
ScaI AGTACT 2 cut(s) 893, 952
SchI GAGTC 1 cut(s) 526
ScrFI CCNGG 3 cut(s) 105, 180, 601
SduI GDGCHC 2 cut(s) 162, 615
SfaNI GCATC 7 cut(s) 139, 557, 688, 825, 928, 1039, 1132
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 4 cut(s) 11, 170, 185, 194
SmiMI CAYNNNNRTG 2 cut(s) 642, 1020
SmlI CTYRAG 1 cut(s) 593
SmoI CTYRAG 1 cut(s) 593
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 3 cut(s) 56, 390, 570
SseBI AGGCCT 1 cut(s) 599
SsiI CCGC 2 cut(s) 439, 1153
SspI AATATT 1 cut(s) 653
SspMI CTAG 2 cut(s) 482, 713
StuI AGGCCT 1 cut(s) 599
StyD4I CCNGG 3 cut(s) 103, 178, 599
TaaI ACNGT 2 cut(s) 785, 1086
TaiI ACGT 2 cut(s) 259, 455
TaqI TCGA 2 cut(s) 44, 691
TasI AATT 3 cut(s) 56, 390, 570
TatI WGTACW 2 cut(s) 891, 950
TauI GCSGC 1 cut(s) 1156
TfiI GAWTC 4 cut(s) 413, 676, 797, 1058
Tru1I TTAA 5 cut(s) 216, 246, 389, 443, 960
Tru9I TTAA 5 cut(s) 216, 246, 389, 443, 960
TscAI CASTG 1 cut(s) 1091
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 3 cut(s) 230, 233, 1127
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 6 cut(s) 39, 108, 273, 327, 372, 810
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 1091
VpaK11BI GGWCC 4 cut(s) 11, 170, 185, 194
XapI RAATTY 1 cut(s) 56
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XmiI GTMKAC 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 2 cut(s) 482, 713
ZrmI AGTACT 2 cut(s) 893, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.