Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

35056859 .. 35059036

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTAGAGGTTCTAAACACCATGATTGCCCCACAACCTCAAAGACAAAAAGGAAATTTTGTTCTCAACCTTCTCAGTCAGAAGTGGATGATGGTGTACTAGAGGATGAGGTTGATACTGGGGAAGAACAAGCTTCTGAACCATTTACAGATGCAGATGAGCCTCTAACTGGTCCATTTCCAGGAGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCTATATGGTTTAATAAGGAACGTGATCCGTTGAAACTTCAGAACCATTCATATAAGCTCACACAAACCATAAGTTTTGGAGCTTGGATATATGAGCACTTCCGGAATGTAGTTTCCCCTCATCTTCGTGTTGAATATTTAGAGAATGAGCCACGAGTGAATCGTTGGGAACCTCAAAAAGATGCAGGTTTGTCACTAGTGTACGTGCAAGCTCTTCGCCAGCAGCTTGATCATATGCAGGCGCACGAGGTCATATGGGATCCATATCGTGGTCATAGGGAGGCTCATCCATTATTGGAAATCACATTTTACACAAGAATGCTTAAGTGTTTAGATATTGTGGAACCATATTATCCTGATAGAGTTCTAAGACAATTTGGTCGAGTTCAAACAATTCCTCGCAACCCTTACACCCCTTCTCGTGTTCGACGGGTTTCTGATTCCAAATCGTACAAGGTTGTGTATGAGTACTTTGATGGATTGTGGCAAAGATGGCGAGATCACGTGTTAGCAGATGCAAACCGAAGCACTCCAGTTAAGTTTTCATATGACTGCACTCCAGAATACTTATCGTGGTACCAAAAGATCATACATCCCTATGTTCAACACCCTGATCGGGTGTCTGCTGCAGTTGATTCAAATGAGGAAAATCATCCTTTACAGCGTATATCACGGGCATTGTGTATCACTCAATCTATTGTTGATGTTGGCCGAGATAATACTATAAGACAACCAATGATGCTATATGAGGCAATTGAAAGCATCCAACATATACTATTAGGTGACCAAGTGCAAAATACACGCACATATCAACGTCGGCGGCGTGTACAAAATAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

359

Amino Acids

42.09

Weight (kDa)

6.77

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	107 - 273	6.4e-21	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	413
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	813
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	1 cut(s)	1057
AclWI	GGATC	4 cut(s)	191, 257, 491, 504
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	260
AcvI	CACGTG	1 cut(s)	742
AfaI	GTAC	6 cut(s)	99, 440, 689, 707, 815, 1065
AfiI	CCNNNNNNNGG	4 cut(s)	170, 182, 506, 853
AflII	CTTAAG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	7 cut(s)	211, 271, 371, 626, 842, 876, 995
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	181
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
AluBI	AGCT	7 cut(s)	134, 216, 236, 295, 320, 449, 463
AluI	AGCT	7 cut(s)	134, 216, 236, 295, 320, 449, 463
Alw21I	GWGCWC	1 cut(s)	336
AlwI	GGATC	4 cut(s)	191, 257, 491, 504
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	1 cut(s)	946
ApeKI	GCWGC	4 cut(s)	233, 236, 460, 863
ApoI	RAATTY	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	173, 188
AsuHPI	GGTGA	1 cut(s)	1031
AvaII	GGWCC	2 cut(s)	173, 188
BamHI	GGATCC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	813
BauI	CACGAG	3 cut(s)	390, 482, 657
BbrPI	CACGTG	1 cut(s)	742
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	4 cut(s)	223, 245, 472, 850
BccI	CCATC	4 cut(s)	86, 208, 707, 723
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	183
BclI	TGATCA	1 cut(s)	466
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	3 cut(s)	6, 101, 434
BfmI	CTRYAG	1 cut(s)	864
BfrI	CTTAAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	5 cut(s)	234, 237, 461, 864, 1058
BlsI	GCNGC	5 cut(s)	235, 238, 462, 865, 1059
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	173, 188
BmgT120I	GGNCC	2 cut(s)	173, 188
BmiI	GGNNCC	4 cut(s)	408, 498, 582, 815
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	5 cut(s)	142, 409, 742, 966, 1008
BmuI	ACTGGG	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	753, 780
BsaAI	YACGTR	2 cut(s)	442, 742
BsaBI	GATNNNNATC	1 cut(s)	501
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 182, 506, 853
Bse1I	ACTGG	3 cut(s)	124, 175, 770
Bse8I	GATNNNNATC	1 cut(s)	501
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	6 cut(s)	94, 112, 523, 829, 889, 999
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	4 cut(s)	170, 182, 506, 853
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	3 cut(s)	124, 175, 770
BseXI	GCAGC	4 cut(s)	223, 245, 472, 850
BsgI	GTGCAG	1 cut(s)	775
BshFI	GGCC	1 cut(s)	948
BshNI	GGYRCC	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	4 cut(s)	170, 182, 506, 853
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	1 cut(s)	948
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	339
Bsp1407I	TGTACA	1 cut(s)	1063
Bsp143I	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
BspACI	CCGC	1 cut(s)	1057
BspANI	GGCC	1 cut(s)	948
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	4 cut(s)	408, 498, 582, 815
BspMAI	CTGCAG	1 cut(s)	868
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	4 cut(s)	191, 257, 491, 504
BspQI	GCTCTTC	2 cut(s)	206, 456
BspT107I	GGYRCC	1 cut(s)	813
BspTI	CTTAAG	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	1063
BsrI	ACTGG	3 cut(s)	124, 175, 770
BssMI	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
BssSI	CACGAG	3 cut(s)	390, 482, 657
Bst2BI	CACGAG	3 cut(s)	390, 482, 657
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	2 cut(s)	206, 456
BstAFI	CTTAAG	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	1063
BstBAI	YACGTR	2 cut(s)	442, 742
BstC8I	GCNNGC	3 cut(s)	447, 458, 477
BstDEI	CTNAG	2 cut(s)	75, 605
BstEII	GGTNACC	1 cut(s)	1019
BstF5I	GGATG	6 cut(s)	94, 112, 523, 829, 889, 999
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	7 cut(s)	199, 265, 469, 499, 739, 825, 853
BstMBI	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstNI	CCWGG	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	1019
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	864
BstV1I	GCAGC	4 cut(s)	223, 245, 472, 850
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	948
BtsCI	GGATG	6 cut(s)	94, 112, 523, 829, 889, 999
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	3 cut(s)	447, 458, 477
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	173, 188
Csp6I	GTAC	6 cut(s)	98, 439, 688, 706, 814, 1064
CviAII	CATG	3 cut(s)	23, 194, 227
CviQI	GTAC	6 cut(s)	98, 439, 688, 706, 814, 1064
DdeI	CTNAG	2 cut(s)	75, 605
DpnI	GATC	7 cut(s)	198, 264, 468, 498, 738, 824, 852
DpnII	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
DraI	TTTAAA	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	615
DseDI	GACNNNNNNGTC	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	2 cut(s)	206, 456
EarI	CTCTTC	2 cut(s)	206, 456
Eco47I	GGWCC	2 cut(s)	173, 188
Eco57I	CTGAAG	1 cut(s)	260
Eco72I	CACGTG	1 cut(s)	742
Eco91I	GGTNACC	1 cut(s)	1019
EcoO109I	RGGNCCY	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	1019
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	3 cut(s)	26, 197, 230
FatI	CATG	3 cut(s)	22, 193, 226
FauNDI	CATATG	3 cut(s)	471, 491, 784
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	234, 237, 461, 864, 1058
FokI	GGATG	6 cut(s)	101, 119, 510, 816, 876, 986
Fsp4HI	GCNGC	5 cut(s)	234, 237, 461, 864, 1058
FspBI	CTAG	3 cut(s)	6, 101, 434
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	5 cut(s)	234, 237, 461, 864, 1058
GsuI	CTGGAG	2 cut(s)	753, 780
HaeIII	GGCC	1 cut(s)	948
HapII	CCGG	1 cut(s)	340
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	3 cut(s)	26, 197, 230
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	397, 677, 872
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	1 cut(s)	1031
Hpy166II	GTNNAC	3 cut(s)	98, 439, 1064
Hpy188I	TCNGA	4 cut(s)	82, 139, 279, 676
Hpy188III	TCNNGA	4 cut(s)	194, 340, 593, 797
Hpy8I	GTNNAC	3 cut(s)	98, 439, 1064
Hpy99I	CGWCG	2 cut(s)	669, 1056
HpyAV	CCTTC	2 cut(s)	81, 663
HpyCH4IV	ACGT	4 cut(s)	259, 441, 741, 1051
HpyCH4V	TGCA	8 cut(s)	155, 422, 445, 475, 755, 792, 866, 1030
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	2 cut(s)	75, 605
HpySE526I	ACGT	4 cut(s)	259, 441, 741, 1051
Hsp92II	CATG	3 cut(s)	26, 197, 230
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	339
KpnI	GGTACC	1 cut(s)	817
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
LguI	GCTCTTC	2 cut(s)	206, 456
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	4 cut(s)	223, 245, 472, 850
LweI	GCATC	5 cut(s)	142, 409, 742, 966, 1008
MaeI	CTAG	3 cut(s)	6, 101, 434
MaeII	ACGT	4 cut(s)	259, 441, 741, 1051
MaeIII	GTNAC	2 cut(s)	429, 1019
MalI	GATC	7 cut(s)	198, 264, 468, 498, 738, 824, 852
MboI	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
MboII	GAAGA	4 cut(s)	137, 223, 353, 443
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	4 cut(s)	56, 611, 630, 990
MmeI	TCCRAC	1 cut(s)	1027
MroI	TCCGGA	1 cut(s)	339
MseI	TTAA	4 cut(s)	219, 249, 561, 774
MslI	CAYNNNNRTG	3 cut(s)	363, 554, 834
MspA1I	CMGCKG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	990
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	730
NdeI	CATATG	3 cut(s)	471, 491, 784
NdeII	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
NlaIII	CATG	3 cut(s)	26, 197, 230
NlaIV	GGNNCC	4 cut(s)	408, 498, 582, 815
NmeAIII	GCCGAG	1 cut(s)	974
NmuCI	GTSAC	2 cut(s)	429, 1019
PagI	TCATGA	1 cut(s)	193
PciSI	GCTCTTC	2 cut(s)	206, 456
PcsI	WCGNNNNNNNCGW	2 cut(s)	397, 1057
PctI	GAATGC	1 cut(s)	561
PfeI	GAWTC	3 cut(s)	397, 677, 872
PflMI	CCANNNNNTGG	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	235, 238, 462, 865, 1059
PmaCI	CACGTG	1 cut(s)	742
PmlI	CACGTG	1 cut(s)	742
Ppu21I	YACGTR	2 cut(s)	442, 742
PpuMI	RGGWCCY	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	181
PspCI	CACGTG	1 cut(s)	742
PspEI	GGTNACC	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	4 cut(s)	408, 498, 582, 815
PspPI	GGNCC	2 cut(s)	173, 188
PspPPI	RGGWCCY	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	868
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	6 cut(s)	99, 440, 689, 707, 815, 1065
RsaNI	GTAC	6 cut(s)	98, 439, 688, 706, 814, 1064
RseI	CAYNNNNRTG	3 cut(s)	363, 554, 834
SapI	GCTCTTC	2 cut(s)	206, 456
SaqAI	TTAA	4 cut(s)	219, 249, 561, 774
SatI	GCNGC	5 cut(s)	234, 237, 461, 864, 1058
Sau3AI	GATC	7 cut(s)	196, 262, 466, 496, 736, 822, 850
Sau96I	GGNCC	2 cut(s)	173, 188
ScaI	AGTACT	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	5 cut(s)	142, 409, 742, 966, 1008
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	2 cut(s)	173, 188
SmiMI	CAYNNNNRTG	3 cut(s)	363, 554, 834
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	4 cut(s)	56, 611, 630, 990
SsiI	CCGC	1 cut(s)	1057
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	3 cut(s)	6, 101, 434
StyD4I	CCNGG	1 cut(s)	181
TaiI	ACGT	4 cut(s)	262, 444, 744, 1054
TaqI	TCGA	2 cut(s)	619, 664
TasI	AATT	4 cut(s)	56, 611, 630, 990
TatI	WGTACW	3 cut(s)	97, 705, 1063
TauI	GCSGC	1 cut(s)	1060
TfiI	GAWTC	3 cut(s)	397, 677, 872
Tru1I	TTAA	4 cut(s)	219, 249, 561, 774
Tru9I	TTAA	4 cut(s)	219, 249, 561, 774
TseFI	GTSAC	2 cut(s)	429, 1019
TseI	GCWGC	4 cut(s)	233, 236, 460, 863
Tsp45I	GTSAC	2 cut(s)	429, 1019
TspDTI	ATGAA	2 cut(s)	276, 771
TspGWI	ACGGA	1 cut(s)	255
Van91I	CCANNNNNTGG	1 cut(s)	506
Vha464I	CTTAAG	1 cut(s)	560
VpaK11BI	GGWCC	2 cut(s)	173, 188
XapI	RAATTY	1 cut(s)	56
XspI	CTAG	3 cut(s)	6, 101, 434
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.