Rw3G028120

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001683
Physical Location & Seq
Reverse (-)
41184568 .. 41186865
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G028120.1

Sequence Viewer

Length: 981 bp
ATGGCTAGAGGTTCTAAACACCACGATTGCCCCATAACCTCAAAGACAAAAAGAAAATTTTGCTCTCAACCTTCTCAGTCAGTAGTGGACGATGGTATACTAGAGGCTGGGGTTGATACTGGGGAAGAACAAGCTTCTGAACCCTTTACAGATGCAGATGAATCTCTAAGTGGTCCATTTCCGGGAAGTCCTCATGATCCATCGGTGAAGAGCTTTAAAAGTCATGCAGCAGCTGCTATATGGTTTAATAAGGAACGTGATTCGTTGAAACTTCAGAACCATTCATATAAGCTCACACAATGGGTATTTGATGAACATGTTACTAACCATAAGTTTTGGAGTTACATTGATGGGTCTAGGTTGAGGCCATTATTGTTGTGTCAGCCTGAGACGAATACATTTCACTTATCCTTTGGTGAAATGACAATTACATTGGATAATGTTTTTAACATTTTGGGTATTCCAATTCAGGGTGATTCCATATCTGTATCTGAGGGTGTGCGGTTAGACAAAACTTATTATGCATGTTTACTGTCATCTACACTAGGAGTTACTATAGATGAGGCAAAGAATGAAATGAGTCGATATGGTGGAAATAGGGTAACACTAGAGTGGTTGAGATTAAGATTTCAGAGTGTTTCAGATGATAGTTCTCTTGAATTTATTGAGTTCGCAGCAAGAGGATTCTTGCTATATATATTAGGTTGCACACTTTTTGTGGACAAGACTGGGAATAGGATGAATGTGATTTACCTACATTTTTTACGGGATCTTAATAGGTTGGTCGGTATATATGCCTGGGGAGCTGCAGGGTTATCATTTTTATATCGACAGTTAGGACTTGCATCTAGAGTTGGTTGTAGGCAAATTGGGGGTTATTTGACATTGCTTGAGGCTTGGATATATGAACACTTCCGGAATGTAGTTTCCCCTCATCTTCCGTATATCACGGGCATTGTGTATCACTCAATCTATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

326

Amino Acids

36.78

Weight (kDa)

6.31

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 129 - 308 2.1e-35 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 97
AccIII TCCGGA 1 cut(s) 915
AciI CCGC 1 cut(s) 502
AclWI GGATC 2 cut(s) 191, 777
AcsI RAATTY 2 cut(s) 56, 659
AcuI CTGAAG 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 182, 470
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 268, 659
AjnI CCWGG 1 cut(s) 797
AleI CACNNNNGTG 1 cut(s) 610
AluBI AGCT 5 cut(s) 134, 213, 233, 292, 806
AluI AGCT 5 cut(s) 134, 213, 233, 292, 806
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 191, 777
AlwNI CAGNNNCTG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 915
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 5 cut(s) 227, 230, 233, 674, 806
ApoI RAATTY 2 cut(s) 56, 659
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 3 cut(s) 217, 428, 485
AvaII GGWCC 1 cut(s) 173
BbvI GCAGC 5 cut(s) 220, 239, 242, 686, 793
BccI CCATC 3 cut(s) 86, 208, 344
BciT130I CCWGG 1 cut(s) 799
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 6 cut(s) 6, 101, 357, 545, 608, 849
BfmI CTRYAG 2 cut(s) 555, 807
BisI GCNGC 5 cut(s) 228, 231, 234, 675, 807
BlsI GCNGC 5 cut(s) 229, 232, 235, 676, 808
Bme1390I CCNGG 2 cut(s) 183, 799
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 2 cut(s) 183, 799
BmrI ACTGGG 2 cut(s) 129, 738
BmsI GCATC 2 cut(s) 142, 854
BmuI ACTGGG 2 cut(s) 129, 738
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 798
BsaWI WCCGGW 1 cut(s) 915
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 470
Bse1I ACTGG 2 cut(s) 124, 733
Bse3DI GCAATG 1 cut(s) 884
BseAI TCCGGA 1 cut(s) 915
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 1 cut(s) 744
BseLI CCNNNNNNNGG 2 cut(s) 182, 470
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 3 cut(s) 89, 378, 483
BseNI ACTGG 2 cut(s) 124, 733
BseXI GCAGC 5 cut(s) 220, 239, 242, 686, 793
BseYI CCCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 182, 916
BslI CCNNNNNNNGG 2 cut(s) 182, 470
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsnI GGCC 1 cut(s) 367
Bsp13I TCCGGA 1 cut(s) 915
Bsp143I GATC 2 cut(s) 196, 769
BspACI CCGC 1 cut(s) 502
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 3 cut(s) 88, 379, 484
BspEI TCCGGA 1 cut(s) 915
BspHI TCATGA 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 2 cut(s) 191, 777
BspQI GCTCTTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 884
BsrI ACTGG 2 cut(s) 124, 733
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 2 cut(s) 196, 769
BssNAI GTATAC 1 cut(s) 98
Bst1107I GTATAC 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 2 cut(s) 534, 834
Bst6I CTCTTC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 233
BstDEI CTNAG 4 cut(s) 75, 167, 387, 492
BstF5I GGATG 1 cut(s) 744
BstKTI GATC 2 cut(s) 199, 772
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 196, 769
BstMWI GCNNNNNNNGC 2 cut(s) 233, 803
BstNI CCWGG 1 cut(s) 799
BstNSI RCATGY 2 cut(s) 320, 528
BstSCI CCNGG 2 cut(s) 181, 797
BstSFI CTRYAG 2 cut(s) 555, 807
BstV1I GCAGC 5 cut(s) 220, 239, 242, 686, 793
BstX2I RGATCY 1 cut(s) 769
BstYI RGATCY 1 cut(s) 769
BstZ17I GTATAC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 1 cut(s) 744
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 173
CviAII CATG 4 cut(s) 194, 224, 317, 525
DdeI CTNAG 4 cut(s) 75, 167, 387, 492
DpnI GATC 2 cut(s) 198, 771
DpnII GATC 2 cut(s) 196, 769
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 797
EcoT22I ATGCAT 1 cut(s) 526
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 4 cut(s) 197, 227, 320, 528
FatI CATG 4 cut(s) 193, 223, 316, 524
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 5 cut(s) 228, 231, 234, 675, 807
FokI GGATG 1 cut(s) 751
Fsp4HI GCNGC 5 cut(s) 228, 231, 234, 675, 807
FspBI CTAG 6 cut(s) 6, 101, 357, 545, 608, 849
GluI GCNGC 5 cut(s) 228, 231, 234, 675, 807
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 182, 916
Hin1II CATG 4 cut(s) 197, 227, 320, 528
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 5 cut(s) 161, 260, 476, 580, 684
HpaII CCGG 2 cut(s) 182, 916
HphI GGTGA 3 cut(s) 217, 428, 485
Hpy166II GTNNAC 4 cut(s) 88, 98, 530, 721
Hpy188I TCNGA 5 cut(s) 139, 276, 493, 633, 643
Hpy188III TCNNGA 4 cut(s) 194, 656, 849, 916
Hpy8I GTNNAC 4 cut(s) 88, 98, 530, 721
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 2 cut(s) 534, 834
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 6 cut(s) 155, 227, 524, 708, 809, 845
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 803
HpyF3I CTNAG 4 cut(s) 75, 167, 387, 492
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 4 cut(s) 197, 227, 320, 528
Kpn2I TCCGGA 1 cut(s) 915
Kzo9I GATC 2 cut(s) 196, 769
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 803
Lsp1109I GCAGC 5 cut(s) 220, 239, 242, 686, 793
LweI GCATC 2 cut(s) 142, 854
MaeI CTAG 6 cut(s) 6, 101, 357, 545, 608, 849
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 4 cut(s) 319, 341, 550, 601
MalI GATC 2 cut(s) 198, 771
MboI GATC 2 cut(s) 196, 769
MboII GAAGA 3 cut(s) 137, 220, 929
MflI RGATCY 1 cut(s) 769
MluCI AATT 5 cut(s) 56, 426, 465, 659, 867
MlyI GAGTC 1 cut(s) 589
MnlI CCTC 9 cut(s) 49, 97, 201, 357, 487, 556, 674, 886, 942
Mph1103I ATGCAT 1 cut(s) 526
MroI TCCGGA 1 cut(s) 915
MseI TTAA 5 cut(s) 216, 246, 447, 623, 774
MslI CAYNNNNRTG 1 cut(s) 610
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 2 cut(s) 182, 916
MspR9I CCNGG 2 cut(s) 183, 799
MvaI CCWGG 1 cut(s) 799
MwoI GCNNNNNNNGC 2 cut(s) 233, 803
NciI CCSGG 1 cut(s) 183
NdeII GATC 2 cut(s) 196, 769
NlaIII CATG 4 cut(s) 197, 227, 320, 528
NsiI ATGCAT 1 cut(s) 526
NspI RCATGY 2 cut(s) 320, 528
OliI CACNNNNGTG 1 cut(s) 610
PagI TCATGA 1 cut(s) 193
PciI ACATGT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 203
PfeI GAWTC 4 cut(s) 161, 260, 476, 684
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 5 cut(s) 229, 232, 235, 676, 808
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
PscI ACATGT 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 797
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 797
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 610
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 5 cut(s) 216, 246, 447, 623, 774
SatI GCNGC 5 cut(s) 228, 231, 234, 675, 807
Sau3AI GATC 2 cut(s) 196, 769
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 2 cut(s) 183, 799
SfaNI GCATC 2 cut(s) 142, 854
SfcI CTRYAG 2 cut(s) 555, 807
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 610
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 5 cut(s) 56, 426, 465, 659, 867
SsiI CCGC 1 cut(s) 502
SspMI CTAG 6 cut(s) 6, 101, 357, 545, 608, 849
StyD4I CCNGG 2 cut(s) 181, 797
TaaI ACNGT 2 cut(s) 534, 834
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 583, 829
TasI AATT 5 cut(s) 56, 426, 465, 659, 867
TfiI GAWTC 4 cut(s) 161, 260, 476, 684
Tru1I TTAA 5 cut(s) 216, 246, 447, 623, 774
Tru9I TTAA 5 cut(s) 216, 246, 447, 623, 774
TseI GCWGC 5 cut(s) 227, 230, 233, 674, 806
TspDTI ATGAA 6 cut(s) 174, 273, 327, 588, 755, 921
TspGWI ACGGA 1 cut(s) 930
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 56, 659
XbaI TCTAGA 1 cut(s) 848
XceI RCATGY 2 cut(s) 320, 528
XmiI GTMKAC 1 cut(s) 97
XspI CTAG 6 cut(s) 6, 101, 357, 545, 608, 849
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.