MD17G1028300.v1.1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001683
Physical Location & Seq
Reverse (-)
2000695 .. 2003865
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1028300.v1.1.491

Sequence Viewer

Length: 1392 bp
ATGTCCAAGTGGAATACACTGAAAGAATGGAAATGGCAGGACAAGCAAAATAATAACACTTTTAGGAAGTACATTACAGAGTCATGTTTGTTACCACTGCTGGAGTGTACTTATCGAATTGTTGATAAGATAGTGGTCTCTGCTTTTGTTGAGCGCTGGCAGCCGGAGACTAATACCTTTCACCTACCGTTTGGTGAGATGACCATTACTTTAGACGACGTTTCAAACCTCATAGGGGTTCCTATCACGGGCAAGGCGATCTCTTTACAAGCAGATGATGTCATGAGTAATCATGAACTATTGGTAGAGTTATTAGGGGTTAATGACGAGGAGGCAACCGAGGCTTTGAGCGAGTTCAATGAAGAATATGTGACTCTTTCTTGGTTACGAAAACATTTTGAAGGTGTGAGTGATACAGACTCAATGGAAGCAAATAAGTGTGCAGCTAGGGCTTACTTGTTGTACTTGTTGGGATGTACTCTTTTTGTGGACAAAAGCGGGACTAGGGTACATGTTACTTATCTAAGACTACTTAGGGATCTTGATGCTGTAAGAGGTTATGCATGGGGTGCTAGTGCACTAGCTTGGTTATATCGTCAGTTAGGGCAATCAACTAGATCTAAGGTCAAGCAAATGAGTGGCTATATGACCTTGTTAGAGGCATGGGTGTACGAACACATGCATCTAATTTGTAGCCCTAATTATGACCAAAATTACTCTGATATTGACCCTCGTGCTTGTCGTTGGAAGCCACGAATGTCTAGTGGAACCACGACAGATGACTTGCAGAAGATGAGGAAAAAGTTAGATTCTTTGACAGCCAACCAGGTCACCTGGGAACCCTACAAATCTCGTAGACAAGCACAACCGTTTCATGAGATAACATACTTTACTGGGATGTTAAAATGCTTCGACGTTGTTGAGCCTTACTGTCCTGAGAGGGTACTTAGGCAGTTTGGACGTGTCCAGACAATTCCAAAGGCACCGTGTGTCCTTCCTCGAAGCACAAGAGCAACTCATGCATCAGTTAACAAGTTATTATATGAATACATTGATGGGATGTGGGATGGGTGGCAGAATCATGTCTTGCATCAAAATAACCGAAGCAGCCCAGTTAGCATTGCATCAGATGTTGTCTCGGGGTACTTGGACTGGTACCACAAAGTATCTCATCCTTTTGTTCACAACCCAGCACATAGTACTTCCTCATTTGACCCACAATATACCTCGCACACGTCATACTATCAGGATCGTGTGCAACGTATCCTGAACATCACTAGGCGTATAGTGGACATGGGGAAGGAAGTTGCATTGAGAGATTTCCCTGATGATGTCTACAACGCAGTTGAGAGCATACAAAATCTTTTAGAGGGTAGAAGTTCGGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

464

Amino Acids

53.53

Weight (kDa)

6.32

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 38 - 387 7.3e-76 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1155
AccB1I GGYRCC 2 cut(s) 982, 1155
AccI GTMKAC 2 cut(s) 856, 1335
AciI CCGC 1 cut(s) 498
AclWI GGATC 2 cut(s) 546, 1257
AdeI CACNNNGTG 1 cut(s) 989
AfeI AGCGCT 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 235, 248
AflIII ACRYGT 3 cut(s) 511, 961, 1233
AgsI TTSAA 3 cut(s) 225, 358, 401
AjiI CACGTC 2 cut(s) 962, 1236
AjnI CCWGG 2 cut(s) 825, 833
AluBI AGCT 2 cut(s) 446, 584
AluI AGCT 2 cut(s) 446, 584
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 3 cut(s) 142, 161, 1141
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 2 cut(s) 546, 1257
Ama87I CYCGRG 1 cut(s) 1138
Aor51HI AGCGCT 1 cut(s) 155
ApaLI GTGCAC 1 cut(s) 576
ApeKI GCWGC 3 cut(s) 160, 443, 1107
Asp718I GGTACC 1 cut(s) 1155
AspLEI GCGC 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 173, 206, 823
AvaI CYCGRG 1 cut(s) 1138
BaeGI GKGCMC 1 cut(s) 580
BanI GGYRCC 2 cut(s) 982, 1155
BauI CACGAG 1 cut(s) 732
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 3 cut(s) 172, 455, 1119
BccI CCATC 3 cut(s) 1049, 1061, 1379
BciT130I CCWGG 2 cut(s) 827, 835
BciVI GTATCC 1 cut(s) 1274
BcoDI GTCTC 3 cut(s) 142, 161, 1141
BfaI CTAG 7 cut(s) 447, 504, 573, 581, 615, 762, 1278
BfoI RGCGCY 1 cut(s) 157
BfuI GTATCC 1 cut(s) 1274
BglII AGATCT 1 cut(s) 617
BisI GCNGC 3 cut(s) 161, 444, 1108
BlsI GCNGC 3 cut(s) 162, 445, 1109
BmcAI AGTACT 1 cut(s) 1201
Bme1390I CCNGG 2 cut(s) 827, 835
BmeT110I CYCGRG 1 cut(s) 1138
BmgBI CACGTC 2 cut(s) 962, 1236
BmiI GGNNCC 5 cut(s) 240, 769, 840, 984, 1157
BmrFI CCNGG 2 cut(s) 827, 835
BmrI ACTGGG 2 cut(s) 903, 1106
BmsI GCATC 5 cut(s) 535, 691, 1031, 1099, 1133
BmuI ACTGGG 2 cut(s) 903, 1106
BpmI CTGGAG 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 339, 834
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 248
Bse1I ACTGG 3 cut(s) 898, 1112, 1157
Bse3DI GCAATG 1 cut(s) 1119
BseBI CCWGG 2 cut(s) 827, 835
BseDI CCNNGG 2 cut(s) 339, 834
BseGI GGATG 6 cut(s) 479, 903, 1065, 1072, 1171, 1390
BseLI CCNNNNNNNGG 2 cut(s) 235, 248
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 1 cut(s) 927
BseNI ACTGG 3 cut(s) 898, 1112, 1157
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 3 cut(s) 172, 455, 1119
BseYI CCCAGC 1 cut(s) 1189
BsgI GTGCAG 1 cut(s) 462
BshNI GGYRCC 2 cut(s) 982, 1155
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 1138
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 514
BslI CCNNNNNNNGG 2 cut(s) 235, 248
BsmAI GTCTC 3 cut(s) 142, 161, 1141
BsmFI GGGAC 1 cut(s) 514
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 1138
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 4 cut(s) 258, 538, 617, 1249
BspACI CCGC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 928
BspHI TCATGA 3 cut(s) 282, 292, 874
BspLI GGNNCC 5 cut(s) 240, 769, 840, 984, 1157
BspPI GGATC 2 cut(s) 546, 1257
BspT107I GGYRCC 2 cut(s) 982, 1155
BspTNI GGTCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 1119
BsrI ACTGG 3 cut(s) 898, 1112, 1157
BssECI CCNNGG 2 cut(s) 339, 834
BssMI GATC 4 cut(s) 258, 538, 617, 1249
BssSI CACGAG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 827, 835
Bst4CI ACNGT 4 cut(s) 189, 870, 932, 987
BstAPI GCANNNNNTGC 2 cut(s) 569, 1019
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 5 cut(s) 524, 533, 621, 936, 947
BstEII GGTNACC 1 cut(s) 829
BstF5I GGATG 6 cut(s) 479, 903, 1065, 1072, 1171, 1390
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 4 cut(s) 261, 541, 620, 1252
BstMAI GTCTC 3 cut(s) 142, 161, 1141
BstMBI GATC 4 cut(s) 258, 538, 617, 1249
BstMWI GCNNNNNNNGC 7 cut(s) 43, 160, 341, 449, 569, 1019, 1116
BstNI CCWGG 2 cut(s) 827, 835
BstNSI RCATGY 2 cut(s) 515, 682
BstPI GGTNACC 1 cut(s) 829
BstSCI CCNGG 2 cut(s) 825, 833
BstSLI GKGCMC 1 cut(s) 580
BstV1I GCAGC 3 cut(s) 172, 455, 1119
BstX2I RGATCY 2 cut(s) 538, 617
BstYI RGATCY 2 cut(s) 538, 617
BsuI GTATCC 1 cut(s) 1274
BtrI CACGTC 2 cut(s) 962, 1236
BtsCI GGATG 6 cut(s) 479, 903, 1065, 1072, 1171, 1390
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 17, 95
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 3 cut(s) 282, 292, 874
CfoI GCGC 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 825
DdeI CTNAG 5 cut(s) 524, 533, 621, 936, 947
DpnI GATC 4 cut(s) 260, 540, 619, 1251
DpnII GATC 4 cut(s) 258, 538, 617, 1249
DraIII CACNNNGTG 1 cut(s) 989
Eco31I GGTCTC 1 cut(s) 142
Eco47III AGCGCT 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 1138
Eco91I GGTNACC 1 cut(s) 829
EcoO65I GGTNACC 1 cut(s) 829
EcoRII CCWGG 2 cut(s) 825, 833
EcoT22I ATGCAT 3 cut(s) 565, 684, 1024
FaqI GGGAC 1 cut(s) 514
FauI CCCGC 1 cut(s) 491
FblI GTMKAC 2 cut(s) 856, 1335
Fnu4HI GCNGC 3 cut(s) 161, 444, 1108
FokI GGATG 5 cut(s) 486, 910, 1072, 1079, 1158
Fsp4HI GCNGC 3 cut(s) 161, 444, 1108
FspBI CTAG 7 cut(s) 447, 504, 573, 581, 615, 762, 1278
GlaI GCGC 1 cut(s) 155
GluI GCNGC 3 cut(s) 161, 444, 1108
GsaI CCCAGC 1 cut(s) 1193
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 157
HapII CCGG 1 cut(s) 164
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HinfI GANTC 5 cut(s) 80, 373, 419, 809, 1078
HpaI GTTAAC 1 cut(s) 1030
HpaII CCGG 1 cut(s) 164
HphI GGTGA 3 cut(s) 173, 206, 823
Hpy166II GTNNAC 9 cut(s) 108, 490, 578, 670, 857, 1030, 1183, 1291, 1336
Hpy188I TCNGA 3 cut(s) 721, 1129, 1384
Hpy188III TCNNGA 8 cut(s) 283, 293, 542, 875, 935, 967, 1247, 1267
Hpy8I GTNNAC 9 cut(s) 108, 490, 578, 670, 857, 1030, 1183, 1291, 1336
Hpy99I CGWCG 2 cut(s) 221, 917
HpyAV CCTTC 3 cut(s) 395, 1004, 1294
HpyCH4III ACNGT 4 cut(s) 189, 870, 932, 987
HpyCH4IV ACGT 5 cut(s) 219, 915, 961, 1235, 1261
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 160, 341, 449, 569, 1019, 1116
HpyF3I CTNAG 5 cut(s) 524, 533, 621, 936, 947
HpySE526I ACGT 5 cut(s) 219, 915, 961, 1235, 1261
HspAI GCGC 1 cut(s) 154
KpnI GGTACC 1 cut(s) 1159
KspAI GTTAAC 1 cut(s) 1030
Kzo9I GATC 4 cut(s) 258, 538, 617, 1249
Lsp1109I GCAGC 3 cut(s) 172, 455, 1119
LweI GCATC 5 cut(s) 535, 691, 1031, 1099, 1133
MabI ACCWGGT 1 cut(s) 825
MaeI CTAG 7 cut(s) 447, 504, 573, 581, 615, 762, 1278
MaeII ACGT 5 cut(s) 219, 915, 961, 1235, 1261
MaeIII GTNAC 5 cut(s) 90, 370, 384, 514, 829
MalI GATC 4 cut(s) 260, 540, 619, 1251
MboI GATC 4 cut(s) 258, 538, 617, 1249
MboII GAAGA 2 cut(s) 374, 802
MflI RGATCY 2 cut(s) 538, 617
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 5 cut(s) 117, 687, 700, 712, 972
MlyI GAGTC 3 cut(s) 89, 367, 413
MmeI TCCRAC 1 cut(s) 725
Mph1103I ATGCAT 3 cut(s) 565, 684, 1024
MseI TTAA 3 cut(s) 321, 902, 1029
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 827, 835
MvaI CCWGG 2 cut(s) 827, 835
MwoI GCNNNNNNNGC 7 cut(s) 43, 160, 341, 449, 569, 1019, 1116
NdeII GATC 4 cut(s) 258, 538, 617, 1249
NlaIV GGNNCC 5 cut(s) 240, 769, 840, 984, 1157
NmuCI GTSAC 2 cut(s) 370, 829
NsiI ATGCAT 3 cut(s) 565, 684, 1024
NspI RCATGY 2 cut(s) 515, 682
PagI TCATGA 3 cut(s) 282, 292, 874
PciI ACATGT 1 cut(s) 511
PcsI WCGNNNNNNNCGW 3 cut(s) 254, 739, 1258
PfeI GAWTC 2 cut(s) 809, 1078
PkrI GCNGC 3 cut(s) 162, 445, 1109
PleI GAGTC 3 cut(s) 88, 367, 413
PpsI GAGTC 3 cut(s) 88, 367, 413
PscI ACATGT 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 825, 833
PspEI GGTNACC 1 cut(s) 829
PspFI CCCAGC 1 cut(s) 1189
PspGI CCWGG 2 cut(s) 825, 833
PspN4I GGNNCC 5 cut(s) 240, 769, 840, 984, 1157
PsuI RGATCY 2 cut(s) 538, 617
SaqAI TTAA 3 cut(s) 321, 902, 1029
SatI GCNGC 3 cut(s) 161, 444, 1108
Sau3AI GATC 4 cut(s) 258, 538, 617, 1249
ScaI AGTACT 1 cut(s) 1201
SchI GAGTC 3 cut(s) 89, 367, 413
ScrFI CCNGG 2 cut(s) 827, 835
SduI GDGCHC 1 cut(s) 580
SexAI ACCWGGT 1 cut(s) 825
SfaNI GCATC 5 cut(s) 535, 691, 1031, 1099, 1133
Sse9I AATT 5 cut(s) 117, 687, 700, 712, 972
SsiI CCGC 1 cut(s) 498
SspMI CTAG 7 cut(s) 447, 504, 573, 581, 615, 762, 1278
StyD4I CCNGG 2 cut(s) 825, 833
TaaI ACNGT 4 cut(s) 189, 870, 932, 987
TaiI ACGT 5 cut(s) 222, 918, 964, 1238, 1264
TaqI TCGA 3 cut(s) 115, 912, 1000
TasI AATT 5 cut(s) 117, 687, 700, 712, 972
TatI WGTACW 5 cut(s) 69, 107, 462, 476, 1199
TfiI GAWTC 2 cut(s) 809, 1078
Tru1I TTAA 3 cut(s) 321, 902, 1029
Tru9I TTAA 3 cut(s) 321, 902, 1029
TscAI CASTG 2 cut(s) 24, 102
TseFI GTSAC 2 cut(s) 370, 829
TseI GCWGC 3 cut(s) 160, 443, 1107
Tsp45I GTSAC 2 cut(s) 370, 829
TspDTI ATGAA 4 cut(s) 309, 375, 863, 1059
TspRI CASTG 2 cut(s) 24, 102
VneI GTGCAC 1 cut(s) 576
XceI RCATGY 2 cut(s) 515, 682
XmiI GTMKAC 2 cut(s) 856, 1335
XspI CTAG 7 cut(s) 447, 504, 573, 581, 615, 762, 1278
ZrmI AGTACT 1 cut(s) 1201
Zsp2I ATGCAT 3 cut(s) 565, 684, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.