Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

53305707 .. 53308169

Gene Structure 2463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0360500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAAAGTGGCAGCCTGGTCCGGATAGTTCCTTTGTGTTCACTGCTTCTTCTTCTTCTTTTTCCTGTGATTCATGGTTGGGGTATCGAGGGTCACACGACGGTGTGTAGAATTGCTCAGTCTAGGTTGAGCGATGCGGCAGCAGATGCAGTGAAGCAATTGCTTCCCAAGTATGCAGAAAATGACTTGGGGACTGTGTGCATATGGGCCGATCGTGTCAAGTTTCGGTATCACTGGTCATCTGCCCTTCACTACATTGACACTCCTGACAACCTTTGCACTTATCAGTACAATAGGGACTGCAAGGACGAAAATGGAGACAAGGGGCGTTGTGTTGCAGGGGCCATAAACAATTACACCACTCAGCTTCTCACTTACAGCTCCGGTTCTTCCAAGTCGGAATATAACCTCACTGAAGCACTGTTATTCCTTTCTCATTTTTTCGGAGACATCCATCAGCCTCTACATGTGGGTTTCACTTCAGACAGGGGGGCCAATACCATCGAAGTTCACTGGTACACCAGGAAGCAAAATCTTCACCATATATGGGATAGCAACATAATCGAAACAGCAGAAGAGAGGTTCTACGAGAATAATCTGGATGAGCTGGTTGATGCGATTAAACAGAACATTACGACTGAATGGGCAGATGAAGTTAAGGCTTGGGAGACCTGCAGTTTGAACAAGACAGCATGCCCAGATGTATATGCATCTGAAGGTATCAAAGCAGCTTGTGATTGGGCTTACAAGGGTGTAGATGAAGGCTCAGTCTTACAAGATCCATACTTCCTCTCCCGTTTACCTATCGTCAATAGGCGGTTGGCTCAAGGTGGAGTCCGGTTAGCAGCCACTCTCAACCGGATCTTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

290

Amino Acids

32.73

Weight (kDa)

5.56

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1-P1_nuclease	PF02265	27 - 289	1.2e-84	S1/P1 Nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	2 cut(s)	137, 817
AclWI	GGATC	2 cut(s)	773, 869
AcuI	CTGAAG	3 cut(s)	435, 465, 735
AfaI	GTAC	2 cut(s)	290, 518
AfiI	CCNNNNNNNGG	1 cut(s)	547
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	682
AjnI	CCWGG	2 cut(s)	15, 521
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	4 cut(s)	367, 381, 607, 731
AluI	AGCT	4 cut(s)	367, 381, 607, 731
Alw26I	GTCTC	3 cut(s)	312, 441, 662
AlwI	GGATC	2 cut(s)	773, 869
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	3 cut(s)	207, 342, 492
ApeKI	GCWGC	4 cut(s)	12, 140, 728, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	661, 693
AspS9I	GGNCC	4 cut(s)	19, 207, 342, 492
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	19
BbvI	GCAGC	4 cut(s)	24, 152, 740, 857
BccI	CCATC	2 cut(s)	462, 509
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	2 cut(s)	17, 523
BcoDI	GTCTC	3 cut(s)	312, 441, 662
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
BlsI	GCNGC	5 cut(s)	14, 139, 142, 730, 847
Bme1390I	CCNGG	2 cut(s)	17, 523
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	4 cut(s)	19, 207, 342, 492
BmiI	GGNNCC	2 cut(s)	343, 493
BmrFI	CCNGG	2 cut(s)	17, 523
BmsI	GCATC	4 cut(s)	124, 136, 604, 719
BpuEI	CTTGAG	1 cut(s)	810
BsaI	GGTCTC	1 cut(s)	662
BsaWI	WCCGGW	4 cut(s)	21, 383, 837, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	239, 518
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	17, 523
BseGI	GGATG	2 cut(s)	450, 607
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	131, 377, 780
BseNI	ACTGG	2 cut(s)	239, 518
BseXI	GCAGC	4 cut(s)	24, 152, 740, 857
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	209, 344, 494
BsiEI	CGRYCG	1 cut(s)	214
BsiSI	CCGG	4 cut(s)	22, 384, 838, 859
BslFI	GGGAC	2 cut(s)	205, 311
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	3 cut(s)	312, 441, 662
BsmFI	GGGAC	2 cut(s)	205, 311
BsnI	GGCC	3 cut(s)	209, 344, 494
Bso31I	GGTCTC	1 cut(s)	662
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	211, 778, 861
BspACI	CCGC	2 cut(s)	137, 817
BspANI	GGCC	3 cut(s)	209, 344, 494
BspCNI	CTCAG	3 cut(s)	130, 376, 779
BspEI	TCCGGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	343, 493
BspMAI	CTGCAG	1 cut(s)	677
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	2 cut(s)	773, 869
BspTNI	GGTCTC	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	239, 518
BssMI	GATC	3 cut(s)	211, 778, 861
Bst2UI	CCWGG	2 cut(s)	17, 523
Bst4CI	ACNGT	3 cut(s)	103, 196, 423
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	694
BstDEI	CTNAG	3 cut(s)	117, 363, 766
BstF5I	GGATG	2 cut(s)	450, 607
BstKTI	GATC	3 cut(s)	214, 781, 864
BstMAI	GTCTC	3 cut(s)	312, 441, 662
BstMBI	GATC	3 cut(s)	211, 778, 861
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	2 cut(s)	17, 523
BstNSI	RCATGY	2 cut(s)	470, 696
BstSCI	CCNGG	2 cut(s)	15, 521
BstSFI	CTRYAG	1 cut(s)	673
BstV1I	GCAGC	4 cut(s)	24, 152, 740, 857
BstX2I	RGATCY	2 cut(s)	778, 861
BstYI	RGATCY	2 cut(s)	778, 861
BsuRI	GGCC	3 cut(s)	209, 344, 494
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	450, 607
BtsI	GCAGTG	2 cut(s)	41, 156
BtsIMutI	CAGTG	6 cut(s)	41, 156, 232, 411, 419, 511
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	1 cut(s)	694
Cfr13I	GGNCC	4 cut(s)	19, 207, 342, 492
Csp6I	GTAC	2 cut(s)	289, 517
CviAII	CATG	3 cut(s)	74, 467, 693
CviQI	GTAC	2 cut(s)	289, 517
DdeI	CTNAG	3 cut(s)	117, 363, 766
DpnI	GATC	3 cut(s)	213, 780, 863
DpnII	GATC	3 cut(s)	211, 778, 861
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	3 cut(s)	435, 465, 735
EcoRII	CCWGG	2 cut(s)	15, 521
EcoT22I	ATGCAT	1 cut(s)	712
FaeI	CATG	3 cut(s)	77, 470, 696
FaqI	GGGAC	2 cut(s)	205, 311
FatI	CATG	3 cut(s)	73, 466, 692
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
FokI	GGATG	2 cut(s)	437, 614
Fsp4HI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
HaeIII	GGCC	3 cut(s)	209, 344, 494
HapII	CCGG	4 cut(s)	22, 384, 838, 859
Hin1II	CATG	3 cut(s)	77, 470, 696
HinfI	GANTC	2 cut(s)	70, 834
HpaII	CCGG	4 cut(s)	22, 384, 838, 859
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	4 cut(s)	41, 511, 519, 800
Hpy188I	TCNGA	4 cut(s)	400, 446, 484, 715
Hpy188III	TCNNGA	3 cut(s)	22, 266, 599
Hpy8I	GTNNAC	4 cut(s)	41, 511, 519, 800
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	257, 710, 755
HpyCH4III	ACNGT	3 cut(s)	103, 196, 423
HpyCH4V	TGCA	8 cut(s)	149, 176, 201, 279, 303, 338, 675, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	3 cut(s)	117, 363, 766
Hsp92II	CATG	3 cut(s)	77, 470, 696
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	211, 778, 861
LmnI	GCTCC	1 cut(s)	386
Lsp1109I	GCAGC	4 cut(s)	24, 152, 740, 857
LweI	GCATC	4 cut(s)	124, 136, 604, 719
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	3 cut(s)	213, 780, 863
MboI	GATC	3 cut(s)	211, 778, 861
MboII	GAAGA	7 cut(s)	41, 44, 47, 381, 527, 587, 856
MfeI	CAATTG	1 cut(s)	158
MflI	RGATCY	2 cut(s)	778, 861
MluCI	AATT	3 cut(s)	111, 158, 352
MlyI	GAGTC	1 cut(s)	843
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	5 cut(s)	82, 419, 471, 573, 800
Mph1103I	ATGCAT	1 cut(s)	712
MroI	TCCGGA	1 cut(s)	21
MseI	TTAA	2 cut(s)	621, 657
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	4 cut(s)	22, 384, 838, 859
MspR9I	CCNGG	2 cut(s)	17, 523
MunI	CAATTG	1 cut(s)	158
MvaI	CCWGG	2 cut(s)	17, 523
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	3 cut(s)	211, 778, 861
NlaIII	CATG	3 cut(s)	77, 470, 696
NlaIV	GGNNCC	2 cut(s)	343, 493
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	712
NspI	RCATGY	2 cut(s)	470, 696
OliI	CACNNNNGTG	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	696
PciI	ACATGT	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	14, 139, 142, 730, 847
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PscI	ACATGT	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	15, 521
PspGI	CCWGG	2 cut(s)	15, 521
PspN4I	GGNNCC	2 cut(s)	343, 493
PspPI	GGNCC	4 cut(s)	19, 207, 342, 492
PstI	CTGCAG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	778, 861
PvuI	CGATCG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	290, 518
RsaNI	GTAC	2 cut(s)	289, 517
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	621, 657
SatI	GCNGC	5 cut(s)	13, 138, 141, 729, 846
Sau3AI	GATC	3 cut(s)	211, 778, 861
Sau96I	GGNCC	4 cut(s)	19, 207, 342, 492
SchI	GAGTC	1 cut(s)	843
ScrFI	CCNGG	2 cut(s)	17, 523
SfaNI	GCATC	4 cut(s)	124, 136, 604, 719
SfcI	CTRYAG	1 cut(s)	673
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	825
SmoI	CTYRAG	1 cut(s)	825
SphI	GCATGC	1 cut(s)	696
Sse9I	AATT	3 cut(s)	111, 158, 352
SsiI	CCGC	2 cut(s)	137, 817
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	15, 521
TaaI	ACNGT	3 cut(s)	103, 196, 423
TaqI	TCGA	3 cut(s)	87, 504, 564
TasI	AATT	3 cut(s)	111, 158, 352
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	621, 657
Tru9I	TTAA	2 cut(s)	621, 657
TscAI	CASTG	6 cut(s)	48, 156, 239, 418, 426, 518
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	4 cut(s)	12, 140, 728, 845
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	62, 666, 774
TspRI	CASTG	6 cut(s)	48, 156, 239, 418, 426, 518
VpaK11BI	GGWCC	1 cut(s)	19
XceI	RCATGY	2 cut(s)	470, 696
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.