Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

39021686 .. 39024659

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG179300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGAATACAGAACGGTGGAGGTGGTCATTGGGTGGCGGACATAAACGGCCACGATCTCATTGCCGCGGCGGGTTTGATACTTCAAAACGTCAACGTTTTCACAGTGGGGAAATGGGTCGATAAGCAAGAACCCAGTTGCGTGGTCCTTAATGACCTTGTAGGAAGTATGGCTAGAGGTTCTAAACACCATGATTGCCCCATAACCTTAAAGACAAAAAGAAAATTTTGTTCTCAACCTTCTCAGTCAGTAGTGGATGATGGTATACTAGAGGCTGGGGTTGATACGAGGGAAGAACAAGCTTCTGAACCCTTTACAGATGCAGATGAACCTCTAAGTGGTCCATTTCCGGGAGGTCCTCATGATCCATCGGTATTGAAGAGCTTTAAAAGTCATGTAGCAGCTGCTATATGGTTTAATAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

142

Amino Acids

15.24

Weight (kDa)

5.8

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	1 cut(s)	68
AciI	CCGC	4 cut(s)	38, 66, 68, 71
AclI	AACGTT	1 cut(s)	96
AclWI	GGATC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	338, 350
AgsI	TTSAA	2 cut(s)	86, 379
AluBI	AGCT	3 cut(s)	302, 384, 404
AluI	AGCT	3 cut(s)	302, 384, 404
AlwI	GGATC	1 cut(s)	359
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	401, 404
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	145, 341, 356
AsuC2I	CCSGG	1 cut(s)	351
AvaII	GGWCC	3 cut(s)	145, 341, 356
BbvI	GCAGC	2 cut(s)	391, 413
BccI	CCATC	2 cut(s)	254, 376
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BcnI	CCSGG	1 cut(s)	351
BfaI	CTAG	2 cut(s)	174, 269
BisI	GCNGC	4 cut(s)	66, 69, 402, 405
BlsI	GCNGC	4 cut(s)	67, 70, 403, 406
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	3 cut(s)	145, 341, 356
BmgT120I	GGNCC	3 cut(s)	145, 341, 356
BmrFI	CCNGG	1 cut(s)	351
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 350
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	338, 350
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	391, 413
BseYI	CCCAGC	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	338, 350
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	55, 364
BspACI	CCGC	4 cut(s)	38, 66, 68, 71
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	361
BspPI	GGATC	1 cut(s)	359
BspQI	GCTCTTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	55, 364
BssNAI	GTATAC	1 cut(s)	266
Bst1107I	GTATAC	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	17, 106
Bst6I	CTCTTC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	243, 335
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	58, 367
BstMBI	GATC	2 cut(s)	55, 364
BstSCI	CCNGG	1 cut(s)	349
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	391, 413
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstZ17I	GTATAC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	111
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	145, 341, 356
Cfr42I	CCGCGG	1 cut(s)	69
CviAII	CATG	3 cut(s)	191, 362, 395
CviJI	RGCY	6 cut(s)	51, 173, 275, 302, 384, 404
CviKI_1	RGCY	6 cut(s)	51, 173, 275, 302, 384, 404
DdeI	CTNAG	2 cut(s)	243, 335
DpnI	GATC	2 cut(s)	57, 366
DpnII	GATC	2 cut(s)	55, 364
DraI	TTTAAA	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	1 cut(s)	53
Eco47I	GGWCC	3 cut(s)	145, 341, 356
EcoO109I	RGGNCCY	1 cut(s)	356
FaeI	CATG	3 cut(s)	194, 365, 398
FatI	CATG	3 cut(s)	190, 361, 394
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	66, 69, 402, 405
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	4 cut(s)	66, 69, 402, 405
FspBI	CTAG	2 cut(s)	174, 269
GluI	GCNGC	4 cut(s)	66, 69, 402, 405
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	3 cut(s)	194, 365, 398
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	300
HpaII	CCGG	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	94, 266
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	2 cut(s)	94, 266
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	2 cut(s)	17, 106
HpyCH4IV	ACGT	2 cut(s)	90, 96
HpyCH4V	TGCA	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	243, 335
HpySE526I	ACGT	2 cut(s)	90, 96
Hsp92II	CATG	3 cut(s)	194, 365, 398
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	55, 364
LguI	GCTCTTC	1 cut(s)	374
LpnPI	CCDG	3 cut(s)	148, 261, 363
Lsp1109I	GCAGC	2 cut(s)	391, 413
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	174, 269
MaeII	ACGT	2 cut(s)	90, 96
MalI	GATC	2 cut(s)	57, 366
MboI	GATC	2 cut(s)	55, 364
MboII	GAAGA	2 cut(s)	305, 391
MluCI	AATT	1 cut(s)	224
MnlI	CCTC	7 cut(s)	14, 170, 265, 282, 342, 347, 369
MseI	TTAA	4 cut(s)	150, 209, 387, 417
MspA1I	CMGCKG	2 cut(s)	68, 404
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	68
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	2 cut(s)	55, 364
NlaIII	CATG	3 cut(s)	194, 365, 398
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	67, 70, 403, 406
PpuMI	RGGWCCY	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	275
PspPI	GGNCC	3 cut(s)	145, 341, 356
PspPPI	RGGWCCY	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	404
SacII	CCGCGG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	4 cut(s)	150, 209, 387, 417
SatI	GCNGC	4 cut(s)	66, 69, 402, 405
Sau3AI	GATC	2 cut(s)	55, 364
Sau96I	GGNCC	3 cut(s)	145, 341, 356
ScrFI	CCNGG	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	310
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	3 cut(s)	145, 341, 356
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	4 cut(s)	38, 66, 68, 71
SspMI	CTAG	2 cut(s)	174, 269
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	17, 106
TaiI	ACGT	2 cut(s)	93, 99
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	224
TauI	GCSGC	2 cut(s)	68, 71
Tru1I	TTAA	4 cut(s)	150, 209, 387, 417
Tru9I	TTAA	4 cut(s)	150, 209, 387, 417
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	2 cut(s)	401, 404
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	3 cut(s)	145, 341, 356
XapI	RAATTY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	2 cut(s)	174, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.