Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Reverse (-)

1526070 .. 1527118

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACCATTACTTTAGACGACGTGTCAAACCTCTTAGGGGTTCCTATCACGGGCAAGGCAATCTCTTTACAAGCAGAAGATGTCATGAGTAATCATGAACTATTGGTAGAGTTATTAGGGGTTAATGACGAGGAGGCAACCGAGGCTTTGAGCGAGTTCAATGAAGAATATGTGACTCTTTCTTGGTTACGAAAACGTTTTGAAGGTGTGAGTGATACAGACTCAACGGAAGCAAGTAAGTGTCCAGCTAGGGCTTACTTGTTGTACTTGTTGGGATGTACTCTTTTTGTGGACAAAAGCGGGACCAGGGTACATGTTACTTATCTAAGACTACTTAGGGATCTTGATGCTGTAAGAGGCTATGCATGGGGTGCTAGTGCACCAAGTTGGTTATATCATCAGTTAGGGCAATCCACTAGATATAAGGTCAAACAAATGAGTGGCTATATGACCTTGTTAGAGACATGGGTGTACGAACACATGCATCTAGTTTGTAGCCCTAATTATGACCAAAATTACTCTGATATTCACCCTCATGCATGTCGTTGGAAGCCACGAACGTCTAGTGGAACCACGACACATGACTTGCAGAAGATGAGGAAAAAGTTGGATTCTTTGACAGCCAACCAGGTCAGCTGGGAACCCTACACATCTCATAGACAAGCACAACCATTTCATGAGATAACATACTTTACTGGGATGTTAAAATGCTTCGATGTTGTTGAGCCCTACTGTCCTGAGAGGGTACTTAGGCAGTTTGGACATGTCCAGACAATTCCAAAGGCACTGTGTGTCCTTCCTCGAAGCACAAAAGCAACTCATGCATCAGTTAACAAGGTATTATTTGAATACATTGATGGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

289

Amino Acids

32.91

Weight (kDa)

6.3

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclI	AACGTT	1 cut(s)	196
AclWI	GGATC	1 cut(s)	348
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	5 cut(s)	266, 280, 312, 473, 747
AfiI	CCNNNNNNNGG	2 cut(s)	37, 50
AflIII	ACRYGT	3 cut(s)	21, 313, 763
AgsI	TTSAA	3 cut(s)	160, 203, 848
AhdI	GACNNNNNGTC	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	305, 627
AluBI	AGCT	2 cut(s)	248, 636
AluI	AGCT	2 cut(s)	248, 636
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	455
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	382
BccI	CCATC	1 cut(s)	851
BciT130I	CCWGG	2 cut(s)	307, 629
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	5 cut(s)	249, 375, 417, 488, 564
Bme1390I	CCNGG	2 cut(s)	307, 629
Bme18I	GGWCC	1 cut(s)	303
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	4 cut(s)	42, 304, 571, 642
BmrFI	CCNGG	2 cut(s)	307, 629
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	3 cut(s)	337, 493, 833
BmuI	ACTGGG	1 cut(s)	705
BsaJI	CCNNGG	2 cut(s)	141, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 50
Bse1I	ACTGG	1 cut(s)	700
BseBI	CCWGG	2 cut(s)	307, 629
BseDI	CCNNGG	2 cut(s)	141, 306
BseGI	GGATG	3 cut(s)	281, 705, 867
BseLI	CCNNNNNNNGG	2 cut(s)	37, 50
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	382
BseYI	CCCAGC	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	2 cut(s)	37, 50
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	382, 729
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	730
BspHI	TCATGA	3 cut(s)	84, 94, 676
BspLI	GGNNCC	4 cut(s)	42, 304, 571, 642
BspPI	GGATC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	141, 306
BssMI	GATC	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	307, 629
Bst4CI	ACNGT	2 cut(s)	734, 789
BstAPI	GCANNNNNTGC	2 cut(s)	371, 821
BstDEI	CTNAG	5 cut(s)	34, 326, 335, 738, 749
BstF5I	GGATG	3 cut(s)	281, 705, 867
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 371, 821
BstNI	CCWGG	2 cut(s)	307, 629
BstNSI	RCATGY	4 cut(s)	317, 484, 543, 767
BstSCI	CCNGG	2 cut(s)	305, 627
BstSLI	GKGCMC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	281, 705, 867
BtsIMutI	CAGTG	1 cut(s)	785
CciI	TCATGA	3 cut(s)	84, 94, 676
Cfr13I	GGNCC	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	627
Csp6I	GTAC	5 cut(s)	265, 279, 311, 472, 746
CviQI	GTAC	5 cut(s)	265, 279, 311, 472, 746
DdeI	CTNAG	5 cut(s)	34, 326, 335, 738, 749
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DraIII	CACNNNGTG	1 cut(s)	791
DriI	GACNNNNNGTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	729
Eco47I	GGWCC	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	305, 627
EcoT22I	ATGCAT	4 cut(s)	367, 486, 541, 826
EcoT38I	GRGCYC	1 cut(s)	729
FaqI	GGGAC	1 cut(s)	316
FauI	CCCGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	288, 712
FriOI	GRGCYC	1 cut(s)	729
FspBI	CTAG	5 cut(s)	249, 375, 417, 488, 564
GsaI	CCCAGC	1 cut(s)	640
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HinfI	GANTC	3 cut(s)	175, 221, 611
HpaI	GTTAAC	1 cut(s)	832
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	4 cut(s)	292, 380, 472, 832
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	6 cut(s)	85, 95, 344, 677, 737, 769
Hpy8I	GTNNAC	4 cut(s)	292, 380, 472, 832
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	197, 806
HpyCH4III	ACNGT	2 cut(s)	734, 789
HpyCH4IV	ACGT	3 cut(s)	21, 196, 560
HpyCH4V	TGCA	6 cut(s)	365, 380, 484, 539, 589, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 371, 821
HpyF3I	CTNAG	5 cut(s)	34, 326, 335, 738, 749
HpySE526I	ACGT	3 cut(s)	21, 196, 560
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	1 cut(s)	340
LpnPI	CCDG	9 cut(s)	258, 292, 319, 614, 622, 641, 681, 750, 782
LweI	GCATC	3 cut(s)	337, 493, 833
MabI	ACCWGGT	1 cut(s)	627
MaeI	CTAG	5 cut(s)	249, 375, 417, 488, 564
MaeII	ACGT	3 cut(s)	21, 196, 560
MaeIII	GTNAC	3 cut(s)	172, 186, 316
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	89, 176, 604
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	382, 729
MluCI	AATT	3 cut(s)	502, 514, 774
MlyI	GAGTC	2 cut(s)	169, 215
MmeI	TCCRAC	2 cut(s)	527, 588
MnlI	CCTC	9 cut(s)	41, 124, 127, 136, 350, 543, 591, 735, 810
Mph1103I	ATGCAT	4 cut(s)	367, 486, 541, 826
MseI	TTAA	3 cut(s)	123, 704, 831
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	636
MspR9I	CCNGG	2 cut(s)	307, 629
MvaI	CCWGG	2 cut(s)	307, 629
MwoI	GCNNNNNNNGC	3 cut(s)	143, 371, 821
NdeII	GATC	1 cut(s)	340
NlaIV	GGNNCC	4 cut(s)	42, 304, 571, 642
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	4 cut(s)	367, 486, 541, 826
NspI	RCATGY	4 cut(s)	317, 484, 543, 767
PagI	TCATGA	3 cut(s)	84, 94, 676
PciI	ACATGT	2 cut(s)	313, 763
PfeI	GAWTC	1 cut(s)	611
PleI	GAGTC	2 cut(s)	169, 215
PpsI	GAGTC	2 cut(s)	169, 215
PscI	ACATGT	2 cut(s)	313, 763
Psp1406I	AACGTT	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	305, 627
PspFI	CCCAGC	1 cut(s)	636
PspGI	CCWGG	2 cut(s)	305, 627
PspN4I	GGNNCC	4 cut(s)	42, 304, 571, 642
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	636
RsaI	GTAC	5 cut(s)	266, 280, 312, 473, 747
RsaNI	GTAC	5 cut(s)	265, 279, 311, 472, 746
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	123, 704, 831
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	2 cut(s)	169, 215
ScrFI	CCNGG	2 cut(s)	307, 629
SduI	GDGCHC	2 cut(s)	382, 729
SexAI	ACCWGGT	1 cut(s)	627
SfaNI	GCATC	3 cut(s)	337, 493, 833
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	3 cut(s)	502, 514, 774
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	5 cut(s)	249, 375, 417, 488, 564
StyD4I	CCNGG	2 cut(s)	305, 627
TaaI	ACNGT	2 cut(s)	734, 789
TaiI	ACGT	3 cut(s)	24, 199, 563
TaqI	TCGA	2 cut(s)	714, 802
TasI	AATT	3 cut(s)	502, 514, 774
TatI	WGTACW	2 cut(s)	264, 278
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	3 cut(s)	123, 704, 831
Tru9I	TTAA	3 cut(s)	123, 704, 831
TscAI	CASTG	1 cut(s)	792
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	111, 177, 665
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	792
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	303
XceI	RCATGY	4 cut(s)	317, 484, 543, 767
XspI	CTAG	5 cut(s)	249, 375, 417, 488, 564
Zsp2I	ATGCAT	4 cut(s)	367, 486, 541, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.