Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

15887742 .. 15891365

Gene Structure 3624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18510.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCACCATCTGCATCAAACTCGATGGAGTTAACCGTGGGAAGTTCAGGAAGTCAAAAACGCTCGAGATCAAGCTCTGTTATTTGCCAAAGAAGCAGTGTTAATCTCGCTCCGAAGCTTCCTGGATTGGTTGACAAGAAGACTTATGCTCAAGTTTGTACCAATGCAAAACCTGATCGTCTGCGCCCCTTTCTTTTCACTGATCTGAATAAACTGGTGGAGCATATGTATGCTACAAAAAATATCCCTGAGGATATCAGCATATTGAGTGATGCGGCTGCTGCTGAAAAGGTTTTGCTTCACCTGCTTGGCCCTGCTGATGCCAGCATTATGCAGGCATACGCTGATGGTGATCTGAGGAGGAACTTAGCCCACCGTGCCCTTGCTTCCTCGCTCCACTTAGCCATGTGGCTGAGGGAAACTGCAGATATTTCAAAGCAGCGCGATGAAGCCATAGCTCATGTTGCAGGGCTGGAGGAAAGATTAAGAAGGTTCGAGAAGATCTTTGTGAAACAGGAGGCTGAAAATGAGATTCTGAGCCTAGAGGTCGACGATCACTGTCGCGAGAAGGAGTATGAATCTAAGATTGAGATTTTGTCAAATGAGCTTAACCAGCAGAAGCAAGCAACTGAGGTCATGGAGAGCAAGTGCAAGGAGTTGGAGGCCATGCACAAGGAGAAGGCTACTCTTCTGGAAGAGGCCATGAAGCAGCTCAACGATGCCAACATGCTGCTTGCCGAGGTGAGCGAAGGTCTTGGCGTGGCTAGGGAACCCGGGGCCAAGGATCCCAAGCATTTCTGGACTGTTTGCATACACTGCAAGGTCCAGTATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.14

Weight (kDa)

6.03

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	2 cut(s)	444, 564
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	779, 792
AfaI	GTAC	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	435
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	5 cut(s)	75, 118, 458, 607, 712
AluI	AGCT	5 cut(s)	75, 118, 458, 607, 712
AlwI	GGATC	2 cut(s)	779, 792
Ama87I	CYCGRG	2 cut(s)	64, 773
AoxI	GGCC	4 cut(s)	310, 663, 699, 777
ApeKI	GCWGC	5 cut(s)	278, 281, 439, 709, 730
AspLEI	GCGC	2 cut(s)	186, 444
AspS9I	GGNCC	3 cut(s)	311, 777, 823
AsuC2I	CCSGG	2 cut(s)	774, 775
AsuHPI	GGTGA	3 cut(s)	293, 362, 754
AvaI	CYCGRG	2 cut(s)	64, 773
AvaII	GGWCC	1 cut(s)	823
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	382
BamHI	GGATCC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	413
BbvI	GCAGC	5 cut(s)	265, 268, 451, 717, 721
BccI	CCATC	3 cut(s)	16, 19, 341
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	774, 775
BfaI	CTAG	2 cut(s)	542, 765
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	6 cut(s)	276, 279, 282, 440, 710, 731
BlsI	GCNGC	6 cut(s)	277, 280, 283, 441, 711, 732
Bme1390I	CCNGG	3 cut(s)	123, 774, 775
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	2 cut(s)	64, 773
BmgT120I	GGNCC	3 cut(s)	311, 777, 823
BmiI	GGNNCC	3 cut(s)	771, 778, 786
BmrFI	CCNGG	3 cut(s)	123, 774, 775
BmsI	GCATC	4 cut(s)	23, 262, 310, 709
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	774, 775
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	5 cut(s)	36, 738, 773, 774, 780
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 632, 662
Bse1I	ACTGG	2 cut(s)	219, 826
Bse21I	CCTNAGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	5 cut(s)	36, 738, 773, 774, 780
BseJI	GATNNNNATC	1 cut(s)	351
BseMII	CTCAG	5 cut(s)	240, 347, 404, 527, 621
BseNI	ACTGG	2 cut(s)	219, 826
BseRI	GAGGAG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	5 cut(s)	265, 268, 451, 717, 721
Bsh1236I	CGCG	2 cut(s)	444, 564
BshFI	GGCC	4 cut(s)	312, 665, 701, 779
BsiHKCI	CYCGRG	2 cut(s)	64, 773
BsiSI	CCGG	1 cut(s)	774
BsnI	GGCC	4 cut(s)	312, 665, 701, 779
BsoBI	CYCGRG	2 cut(s)	64, 773
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
Bsp68I	TCGCGA	1 cut(s)	564
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	4 cut(s)	312, 665, 701, 779
BspCNI	CTCAG	5 cut(s)	241, 348, 405, 528, 622
BspFNI	CGCG	2 cut(s)	444, 564
BspLI	GGNNCC	3 cut(s)	771, 778, 786
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	779, 792
BsrI	ACTGG	2 cut(s)	219, 826
BssECI	CCNNGG	5 cut(s)	36, 738, 773, 774, 780
BssMI	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	4 cut(s)	37, 377, 560, 805
Bst6I	CTCTTC	2 cut(s)	690, 693
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstC8I	GCNNGC	4 cut(s)	325, 336, 624, 735
BstDEI	CTNAG	8 cut(s)	249, 356, 367, 400, 413, 536, 582, 630
BstDSI	CCRYGG	1 cut(s)	36
BstFNI	CGCG	2 cut(s)	444, 564
BstHHI	GCGC	2 cut(s)	186, 444
BstKTI	GATC	7 cut(s)	71, 178, 205, 355, 504, 556, 787
BstMBI	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 281, 304, 377, 464, 613, 816
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	3 cut(s)	121, 772, 773
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	2 cut(s)	444, 564
BstV1I	GCAGC	5 cut(s)	265, 268, 451, 717, 721
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	501, 784
BstYI	RGATCY	2 cut(s)	501, 784
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	4 cut(s)	312, 665, 701, 779
BtgI	CCRYGG	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	459
BtsI	GCAGTG	2 cut(s)	103, 814
BtsIMutI	CAGTG	4 cut(s)	103, 198, 556, 814
BtuMI	TCGCGA	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	325, 336, 624, 735
CfoI	GCGC	2 cut(s)	186, 444
Cfr13I	GGNCC	3 cut(s)	311, 777, 823
Cfr9I	CCCGGG	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	6 cut(s)	406, 461, 637, 667, 703, 727
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	8 cut(s)	249, 356, 367, 400, 413, 536, 582, 630
DpnI	GATC	7 cut(s)	70, 177, 204, 354, 503, 555, 786
DpnII	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
Eam1104I	CTCTTC	2 cut(s)	690, 693
EarI	CTCTTC	2 cut(s)	690, 693
Eco130I	CCWWGG	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	823
Eco81I	CCTNAGG	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	64, 773
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	6 cut(s)	409, 464, 640, 670, 706, 730
FatI	CATG	6 cut(s)	405, 460, 636, 666, 702, 726
FauNDI	CATATG	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	6 cut(s)	276, 279, 282, 440, 710, 731
Fsp4HI	GCNGC	6 cut(s)	276, 279, 282, 440, 710, 731
FspBI	CTAG	2 cut(s)	542, 765
GlaI	GCGC	2 cut(s)	185, 443
GluI	GCNGC	6 cut(s)	276, 279, 282, 440, 710, 731
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	4 cut(s)	312, 665, 701, 779
HapII	CCGG	1 cut(s)	774
HhaI	GCGC	2 cut(s)	186, 444
Hin1II	CATG	6 cut(s)	409, 464, 640, 670, 706, 730
Hin6I	GCGC	2 cut(s)	184, 442
HinP1I	GCGC	2 cut(s)	184, 442
HincII	GTYRAC	3 cut(s)	33, 133, 550
HindII	GTYRAC	3 cut(s)	33, 133, 550
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	532, 578
HpaI	GTTAAC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	3 cut(s)	293, 362, 754
Hpy166II	GTNNAC	3 cut(s)	33, 133, 550
Hpy188I	TCNGA	4 cut(s)	114, 207, 357, 537
Hpy188III	TCNNGA	6 cut(s)	48, 66, 496, 563, 692, 799
Hpy8I	GTNNAC	3 cut(s)	33, 133, 550
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	4 cut(s)	483, 562, 673, 743
HpyCH4III	ACNGT	4 cut(s)	37, 377, 560, 805
HpyCH4V	TGCA	9 cut(s)	14, 167, 334, 425, 467, 651, 670, 810, 819
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 281, 304, 377, 464, 613, 816
HpyF3I	CTNAG	8 cut(s)	249, 356, 367, 400, 413, 536, 582, 630
Hsp92II	CATG	6 cut(s)	409, 464, 640, 670, 706, 730
HspAI	GCGC	2 cut(s)	184, 442
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
LmnI	GCTCC	3 cut(s)	115, 220, 399
Lsp1109I	GCAGC	5 cut(s)	265, 268, 451, 717, 721
LweI	GCATC	4 cut(s)	23, 262, 310, 709
MaeI	CTAG	2 cut(s)	542, 765
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	7 cut(s)	70, 177, 204, 354, 503, 555, 786
MboI	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
MboII	GAAGA	4 cut(s)	151, 511, 680, 707
MflI	RGATCY	2 cut(s)	501, 784
MhlI	GDGCHC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	639
MseI	TTAA	4 cut(s)	32, 102, 485, 609
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	3 cut(s)	123, 774, 775
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	2 cut(s)	444, 564
MwoI	GCNNNNNNNGC	7 cut(s)	93, 281, 304, 377, 464, 613, 816
NciI	CCSGG	2 cut(s)	774, 775
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
NlaIII	CATG	6 cut(s)	409, 464, 640, 670, 706, 730
NlaIV	GGNNCC	3 cut(s)	771, 778, 786
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	1 cut(s)	3
NruI	TCGCGA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	64
PaqCI	CACCTGC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	532, 578
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	6 cut(s)	277, 280, 283, 441, 711, 732
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	771, 778, 786
PspPI	GGNCC	3 cut(s)	311, 777, 823
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	2 cut(s)	501, 784
RruI	TCGCGA	1 cut(s)	564
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	4 cut(s)	32, 102, 485, 609
SatI	GCNGC	6 cut(s)	276, 279, 282, 440, 710, 731
Sau3AI	GATC	7 cut(s)	68, 175, 202, 352, 501, 553, 784
Sau96I	GGNCC	3 cut(s)	311, 777, 823
ScrFI	CCNGG	3 cut(s)	123, 774, 775
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	4 cut(s)	23, 262, 310, 709
SfcI	CTRYAG	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	823
SlaI	CTCGAG	1 cut(s)	64
SmaI	CCCGGG	1 cut(s)	775
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	64, 150
SmoI	CTYRAG	2 cut(s)	64, 150
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	542, 765
StyD4I	CCNGG	3 cut(s)	121, 772, 773
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	4 cut(s)	37, 377, 560, 805
TaqI	TCGA	4 cut(s)	23, 65, 495, 549
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	532, 578
Tru1I	TTAA	4 cut(s)	32, 102, 485, 609
Tru9I	TTAA	4 cut(s)	32, 102, 485, 609
TscAI	CASTG	4 cut(s)	103, 205, 563, 821
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	278, 281, 439, 709, 730
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	462, 591, 719
TspMI	CCCGGG	1 cut(s)	773
TspRI	CASTG	4 cut(s)	103, 205, 563, 821
VpaK11BI	GGWCC	1 cut(s)	823
XceI	RCATGY	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	64
XmaI	CCCGGG	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	2 cut(s)	542, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.