Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

18882271 .. 18883764

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G198100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTGGCTAAGGGAGAATGGAGAGTCTTCCTTAGCCTCCAGGGAGGGGAATGAAGCCAGAGCTCATGTTGCAGAGCTGGAGGAAAGATTTAGATATGTTGAGGAGATTCTGAGGCATCAGGTCCAAGATTATGGGTCTAAGCTGAATGGCCTGCAAAATAATGTTGATCAGCTGAGGCAGAAGGCTGATTTCTGCGAGAGGAAATGGAAGGAGCAGGAGGCCTTGCATCAGGAGAAGGCCACTTGTTTGGAAGAGGTTTTGAGGCAGCTTGAGGAAGCTAACTCCAACCTTGCCAAGGTCACTCAAAGTCATGACATGGCCAGAACACAGATCGAAAAGCTGACTGGTGCCCTCACTCTGAACATGAAGCTCTACGATCAGGCTGAGGTTGAAGTGAAGAAGTTTCAGCAGGATTGTGAAATGGATAGGATCCTTGGGGAAATAGAGAAGGAACAGCGTGCCGAAAAAAGGATTGCTCTGACCACCGAGATCAAGCTGAATGAGGACTTCCAAAACCCGAACCAGAAGAAGGAAGGTGGGGTCATCCCAACGCTGGAGCTAAACAAAGATGTTAGTAAGCAGGTCATAGAGGCCAAAGACGTCAATGGAGAAGTGAAGGCCCATAATCCTTCGACGTTCTGGACAGTTTGCAGTAGCTGCAAATATCAATATGAGTATGGCAGGGTTTATGTAAATTGCCATCTCCGCTGCAGTAGATGTCGAGCAGGTTTTCTGGCTTTAGAAAATTGTCGACCACCTCCAATTGTTAAGTCATCCAGTAACTCTTCTGACCAGCAACATAGGAGTTCAAGACACCTTGTTGATACGGGAAGTCAAGTAACTGCTTGTGGTAAGCCCCCATATCCTGGATCGGTCTCCCCAAAAGACCTTGGAGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

301

Amino Acids

34.18

Weight (kDa)

6.29

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	603
Acc36I	ACCTGC	2 cut(s)	571, 716
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	866
AccI	GTMKAC	1 cut(s)	751
AciI	CCGC	1 cut(s)	706
AclWI	GGATC	3 cut(s)	424, 437, 877
AcoI	YGGCCR	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	600
AfiI	CCNNNNNNNGG	6 cut(s)	45, 295, 468, 529, 553, 866
AgsI	TTSAA	2 cut(s)	392, 810
AjnI	CCWGG	2 cut(s)	38, 865
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	880
AlwI	GGATC	3 cut(s)	424, 437, 877
AlwNI	CAGNNNCTG	1 cut(s)	657
AoxI	GGCC	6 cut(s)	148, 219, 237, 318, 591, 618
ApeKI	GCWGC	3 cut(s)	265, 657, 708
AspS9I	GGNCC	2 cut(s)	121, 619
AvaII	GGWCC	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	64
BbvCI	CCTCAGC	2 cut(s)	173, 384
BbvI	GCAGC	3 cut(s)	277, 644, 695
BccI	CCATC	1 cut(s)	708
BciT130I	CCWGG	2 cut(s)	40, 867
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	880
BfmI	CTRYAG	1 cut(s)	709
BfuAI	ACCTGC	2 cut(s)	571, 716
BisI	GCNGC	3 cut(s)	266, 658, 709
BlsI	GCNGC	3 cut(s)	267, 659, 710
Bme1390I	CCNGG	2 cut(s)	40, 867
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 619
BmiI	GGNNCC	2 cut(s)	349, 431
BmrFI	CCNGG	2 cut(s)	40, 867
BmsI	GCATC	2 cut(s)	124, 235
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	3 cut(s)	22, 98, 575
Bpu10I	CCTNAGC	4 cut(s)	8, 31, 173, 384
BpuEI	CTTGAG	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	880
BsaJI	CCNNGG	4 cut(s)	39, 294, 433, 889
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 295, 468, 529, 553, 866
Bse1I	ACTGG	2 cut(s)	349, 777
BseBI	CCWGG	2 cut(s)	40, 867
BseDI	CCNNGG	4 cut(s)	39, 294, 433, 889
BseGI	GGATG	2 cut(s)	543, 773
BseLI	CCNNNNNNNGG	6 cut(s)	45, 295, 468, 529, 553, 866
BseMII	CTCAG	3 cut(s)	101, 164, 375
BseNI	ACTGG	2 cut(s)	349, 777
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	277, 644, 695
BshFI	GGCC	6 cut(s)	150, 221, 239, 320, 593, 620
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	64
BslI	CCNNNNNNNGG	6 cut(s)	45, 295, 468, 529, 553, 866
BsmAI	GTCTC	1 cut(s)	880
BsnI	GGCC	6 cut(s)	150, 221, 239, 320, 593, 620
Bso31I	GGTCTC	1 cut(s)	880
Bsp1286I	GDGCHC	2 cut(s)	64, 352
Bsp143I	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
BspACI	CCGC	1 cut(s)	706
BspANI	GGCC	6 cut(s)	150, 221, 239, 320, 593, 620
BspCNI	CTCAG	3 cut(s)	102, 165, 376
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	349, 431
BspMAI	CTGCAG	1 cut(s)	713
BspMI	ACCTGC	2 cut(s)	571, 716
BspPI	GGATC	3 cut(s)	424, 437, 877
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	349, 777
BssECI	CCNNGG	4 cut(s)	39, 294, 433, 889
BssMI	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
BssNI	GRCGYC	1 cut(s)	600
BssT1I	CCWWGG	3 cut(s)	294, 433, 889
Bst2UI	CCWGG	2 cut(s)	40, 867
Bst4CI	ACNGT	1 cut(s)	646
Bst6I	CTCTTC	2 cut(s)	246, 790
BstACI	GRCGYC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	657
BstC8I	GCNNGC	2 cut(s)	152, 459
BstDEI	CTNAG	6 cut(s)	8, 31, 110, 138, 173, 384
BstENI	CCTNNNNNAGG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	543, 773
BstKTI	GATC	6 cut(s)	169, 333, 379, 432, 492, 872
BstMAI	GTCTC	1 cut(s)	880
BstMBI	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 657, 705
BstNI	CCWGG	2 cut(s)	40, 867
BstSCI	CCNGG	2 cut(s)	38, 865
BstSFI	CTRYAG	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	277, 644, 695
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	429
BstXI	CCANNNNNNTGG	2 cut(s)	131, 247
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	6 cut(s)	150, 221, 239, 320, 593, 620
BtsCI	GGATG	2 cut(s)	543, 773
BveI	ACCTGC	2 cut(s)	571, 716
Cac8I	GCNNGC	2 cut(s)	152, 459
CaiI	CAGNNNCTG	1 cut(s)	657
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	121, 619
CviAII	CATG	4 cut(s)	65, 311, 316, 364
DdeI	CTNAG	6 cut(s)	8, 31, 110, 138, 173, 384
DpnI	GATC	6 cut(s)	168, 332, 378, 431, 491, 871
DpnII	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	2 cut(s)	246, 790
EarI	CTCTTC	2 cut(s)	246, 790
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	3 cut(s)	294, 433, 889
Eco147I	AGGCCT	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	880
Eco47I	GGWCC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	38, 865
EcoT14I	CCWWGG	3 cut(s)	294, 433, 889
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	3 cut(s)	294, 433, 889
FaeI	CATG	4 cut(s)	68, 314, 319, 367
FatI	CATG	4 cut(s)	64, 310, 315, 363
FbaI	TGATCA	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	266, 658, 709
FokI	GGATG	2 cut(s)	530, 760
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	3 cut(s)	266, 658, 709
GluI	GCNGC	3 cut(s)	266, 658, 709
GsuI	CTGGAG	3 cut(s)	22, 98, 575
HaeIII	GGCC	6 cut(s)	150, 221, 239, 320, 593, 620
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	4 cut(s)	68, 314, 319, 367
HincII	GTYRAC	1 cut(s)	752
HindII	GTYRAC	1 cut(s)	752
HinfI	GANTC	2 cut(s)	23, 106
Hpy166II	GTNNAC	1 cut(s)	752
Hpy188I	TCNGA	4 cut(s)	111, 360, 480, 790
Hpy188III	TCNNGA	4 cut(s)	230, 311, 640, 810
Hpy8I	GTNNAC	1 cut(s)	752
Hpy99I	CGWCG	1 cut(s)	637
HpyAV	CCTTC	8 cut(s)	175, 202, 229, 442, 523, 527, 610, 639
HpyCH4III	ACNGT	1 cut(s)	646
HpyCH4IV	ACGT	2 cut(s)	600, 635
HpyCH4V	TGCA	6 cut(s)	71, 154, 226, 651, 660, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 657, 705
HpyF3I	CTNAG	6 cut(s)	8, 31, 110, 138, 173, 384
HpySE526I	ACGT	2 cut(s)	600, 635
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	4 cut(s)	68, 314, 319, 367
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
LmnI	GCTCC	2 cut(s)	211, 556
Lsp1109I	GCAGC	3 cut(s)	277, 644, 695
LweI	GCATC	2 cut(s)	124, 235
MaeII	ACGT	2 cut(s)	600, 635
MaeIII	GTNAC	3 cut(s)	298, 779, 838
MalI	GATC	6 cut(s)	168, 332, 378, 431, 491, 871
MboI	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
MboII	GAAGA	5 cut(s)	18, 263, 409, 538, 777
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	2 cut(s)	64, 352
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	3 cut(s)	694, 745, 762
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	309
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	1 cut(s)	768
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	2 cut(s)	172, 708
MspR9I	CCNGG	2 cut(s)	40, 867
MunI	CAATTG	1 cut(s)	762
MvaI	CCWGG	2 cut(s)	40, 867
MwoI	GCNNNNNNNGC	3 cut(s)	68, 657, 705
NdeII	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
NlaIII	CATG	4 cut(s)	68, 314, 319, 367
NlaIV	GGNNCC	2 cut(s)	349, 431
NmuCI	GTSAC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	866
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	3 cut(s)	267, 659, 710
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	38, 865
PspGI	CCWGG	2 cut(s)	38, 865
PspN4I	GGNNCC	2 cut(s)	349, 431
PspPI	GGNCC	2 cut(s)	121, 619
PstI	CTGCAG	1 cut(s)	713
PstNI	CAGNNNCTG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	3 cut(s)	266, 658, 709
Sau3AI	GATC	6 cut(s)	166, 330, 376, 429, 489, 869
Sau96I	GGNCC	2 cut(s)	121, 619
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	40, 867
SduI	GDGCHC	2 cut(s)	64, 352
SfaNI	GCATC	2 cut(s)	124, 235
SfcI	CTRYAG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	694, 745, 762
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	1 cut(s)	706
SstI	GAGCTC	1 cut(s)	64
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	38, 865
StyI	CCWWGG	3 cut(s)	294, 433, 889
TaaI	ACNGT	1 cut(s)	646
TaiI	ACGT	2 cut(s)	603, 638
TaqI	TCGA	4 cut(s)	333, 632, 721, 751
TaqII	GACCGA	1 cut(s)	862
TasI	AATT	3 cut(s)	694, 745, 762
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	3 cut(s)	265, 657, 708
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	66, 380
Van91I	CCANNNNNTGG	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	121
XagI	CCTNNNNNAGG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	751
ZraI	GACGTC	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.