RchiOBHm_Chr6g0284021

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002266
Physical Location & Seq
Forward (+)
47286308 .. 47290567
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25470

Sequence Viewer

Length: 1146 bp
ATGTGCCACGTACACAACAATGACGAACGAGTGAGCTCTCTGCTAATGGATTTGGAATCAACCATGGTGAGCTTAAGAAGACAGAAACGCTTGAGGCCATGCTCTGGAAGTAGTTCGGGTGTAGCTTCACTTCCTGGTTTTTGTGACAATGGAACTTCTCTTCAAGCTTCTACCCAGGAAAAACCTGATAATGTGCATCTCACACCTTCAAACAATTCCTGCGGCTCCTGCCTCCATATTGCTATGTGGCTAAGGGTTACTGGGGATGCCTCTAAGGAGCGAGATGAAGCAATAGCTCGTGTTGCAGAGCTGGAGAAAAGAGTTGGAAACTTTGTAGAAACCACTACCAAACAGGAGGCAGTAATCGAGTTTATGAGGCAACAGGTCCTGGAATACTCTAGCATGAAGAGGGAGTATGAGTCCAAGCTTGATGGTTTGTTAAATGATGTTAGTCAGCAGAGGCAGAAGGCTGAAATGTGGGAGAGTAAGTGCAAGGAGCAGGAGGCCTTGCATCAGGTTAAGGCTACTCGTCTGGAGGAGTTTTCTTGTCACCTGGAAGAGGTCTTGAAGCAGCTTGGGGAGGCCAATGCTGACCTTTCTGAGGTCACTCAGGGCCTTCATGTGGCTAGGGAAGGTATTGAGAAGATCACAGGTACCTTTACTCAGGCTGAGGTTAAAGTGAAGCAGCTCCAGAAGAGCTGTGAAATGTATAGGGTGCTTCGTGACATGGAGAAGGAAAAGCATACCAAAGTAAGGACTGCTCCAAGTGCTGAGCTCAAGGAGGATCTCCAGAGGAACGAAAACCATAAGCAGAACAAAGATGGTAACATGCTAACCAGGGAGATGATCAAAGAACTAAAAAAGCAGGTGATGAGGTGGTCCCAAGAAAAGTTTCAGGAGGAAGGTGAAGACCGGGACATGGATGGAGAGGGCTCTAATGCATCAAGGGAACAAGTGGAGGGTGGGGATGCTCTGTCTTTCTGGACGATTTGCAATCACTGCAAAATGTACGTTGAGTATCATAGGATTTATCAAAGTAACTTTCTCCTTTGCCAAAACTGTCACAATGCTTTTAATGCTTTAGAAGTTGCTCCACCGCCACAGGTTTCCAGGTCATCCAGTAGGTCTTCTCTCCAGCAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

381

Amino Acids

43.56

Weight (kDa)

6.06

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_20 PF23551 327 - 360 4.9e-09 Zinc beta-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 856
Acc36I ACCTGC 1 cut(s) 856
Acc65I GGTACC 1 cut(s) 653
AccB1I GGYRCC 1 cut(s) 653
AccB7I CCANNNNNTGG 1 cut(s) 104
AciI CCGC 2 cut(s) 222, 1097
AclWI GGATC 1 cut(s) 792
AfaI GTAC 3 cut(s) 12, 655, 1010
AfiI CCNNNNNNNGG 6 cut(s) 104, 559, 601, 622, 753, 919
AflII CTTAAG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 164, 210, 568
AjnI CCWGG 6 cut(s) 133, 174, 387, 552, 836, 1109
AjuI GAANNNNNNNTTGG 2 cut(s) 876, 908
Alw21I GWGCWC 2 cut(s) 38, 777
AlwI GGATC 1 cut(s) 792
AlwNI CAGNNNCTG 1 cut(s) 388
AoxI GGCC 4 cut(s) 95, 504, 582, 613
ApeKI GCWGC 2 cut(s) 571, 685
Asp700I GAANNNNTTC 2 cut(s) 112, 891
Asp718I GGTACC 1 cut(s) 653
AspS9I GGNCC 3 cut(s) 385, 613, 879
AsuC2I CCSGG 1 cut(s) 914
AsuHPI GGTGA 4 cut(s) 79, 542, 880, 917
AvaII GGWCC 2 cut(s) 385, 879
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 3 cut(s) 38, 777, 935
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
BauI CACGAG 1 cut(s) 297
BbsI GAAGAC 3 cut(s) 85, 915, 1119
Bbv12I GWGCWC 2 cut(s) 38, 777
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 583, 697
BccI CCATC 3 cut(s) 425, 815, 917
BciT130I CCWGG 6 cut(s) 135, 176, 389, 554, 838, 1111
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 1 cut(s) 914
BfaI CTAG 2 cut(s) 399, 627
BfrI CTTAAG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 856
BisI GCNGC 3 cut(s) 223, 572, 686
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 3 cut(s) 224, 573, 687
Bme1390I CCNGG 7 cut(s) 135, 176, 389, 554, 838, 914, 1111
Bme18I GGWCC 2 cut(s) 385, 879
BmgT120I GGNCC 3 cut(s) 385, 613, 879
BmiI GGNNCC 3 cut(s) 226, 655, 881
BmrFI CCNGG 7 cut(s) 135, 176, 389, 554, 838, 914, 1111
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 5 cut(s) 205, 256, 520, 950, 958
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 3 cut(s) 85, 915, 1119
BpmI CTGGAG 5 cut(s) 332, 554, 674, 773, 1118
Bpu10I CCTNAGC 2 cut(s) 251, 669
Bpu1102I GCTNAGC 1 cut(s) 771
BpuEI CTTGAG 2 cut(s) 112, 761
BpuMI CCSGG 1 cut(s) 914
BsaAI YACGTR 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 63, 174, 837
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 473, 503
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 559, 601, 622, 753, 919
Bse1I ACTGG 2 cut(s) 265, 1119
BseBI CCWGG 6 cut(s) 135, 176, 389, 554, 838, 1111
BseDI CCNNGG 3 cut(s) 63, 174, 837
BseGI GGATG 4 cut(s) 271, 928, 973, 1115
BseLI CCNNNNNNNGG 6 cut(s) 104, 559, 601, 622, 753, 919
BseMII CTCAG 5 cut(s) 591, 623, 660, 677, 762
BseNI ACTGG 2 cut(s) 265, 1119
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 583, 697
BshFI GGCC 4 cut(s) 97, 506, 584, 615
BshNI GGYRCC 1 cut(s) 653
BsiHKAI GWGCWC 2 cut(s) 38, 777
BsiSI CCGG 1 cut(s) 913
BslFI GGGAC 2 cut(s) 865, 929
BslI CCNNNNNNNGG 6 cut(s) 104, 559, 601, 622, 753, 919
BsmFI GGGAC 2 cut(s) 865, 929
BsnI GGCC 4 cut(s) 97, 506, 584, 615
Bsp1286I GDGCHC 3 cut(s) 38, 777, 935
Bsp143I GATC 3 cut(s) 645, 784, 846
Bsp1720I GCTNAGC 1 cut(s) 771
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 222, 1097
BspANI GGCC 4 cut(s) 97, 506, 584, 615
BspCNI CTCAG 5 cut(s) 592, 622, 661, 676, 763
BspLI GGNNCC 3 cut(s) 226, 655, 881
BspMI ACCTGC 1 cut(s) 856
BspPI GGATC 1 cut(s) 792
BspQI GCTCTTC 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 653
BspTI CTTAAG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 265, 1119
BssECI CCNNGG 3 cut(s) 63, 174, 837
BssMI GATC 3 cut(s) 645, 784, 846
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 6 cut(s) 135, 176, 389, 554, 838, 1111
Bst4CI ACNGT 1 cut(s) 1061
Bst6I CTCTTC 4 cut(s) 165, 401, 552, 689
BstAFI CTTAAG 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 999
BstBAI YACGTR 1 cut(s) 10
BstDEI CTNAG 7 cut(s) 251, 273, 600, 609, 663, 669, 771
BstDSI CCRYGG 1 cut(s) 63
BstENI CCTNNNNNAGG 2 cut(s) 557, 599
BstF5I GGATG 4 cut(s) 271, 928, 973, 1115
BstKTI GATC 3 cut(s) 648, 787, 849
BstMBI GATC 3 cut(s) 645, 784, 846
BstMWI GCNNNNNNNGC 5 cut(s) 228, 302, 767, 999, 1076
BstNI CCWGG 6 cut(s) 135, 176, 389, 554, 838, 1111
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 7 cut(s) 133, 174, 387, 552, 836, 912, 1109
BstV1I GCAGC 2 cut(s) 583, 697
BstV2I GAAGAC 3 cut(s) 85, 915, 1119
BstX2I RGATCY 1 cut(s) 784
BstYI RGATCY 1 cut(s) 784
BsuRI GGCC 4 cut(s) 97, 506, 584, 615
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 4 cut(s) 271, 928, 973, 1115
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 1 cut(s) 997
BveI ACCTGC 1 cut(s) 856
CaiI CAGNNNCTG 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 385, 613, 879
Csp6I GTAC 3 cut(s) 11, 654, 1009
CviAII CATG 7 cut(s) 64, 99, 403, 620, 727, 829, 919
CviQI GTAC 3 cut(s) 11, 654, 1009
DdeI CTNAG 7 cut(s) 251, 273, 600, 609, 663, 669, 771
DpnI GATC 3 cut(s) 647, 786, 848
DpnII GATC 3 cut(s) 645, 784, 846
Eam1104I CTCTTC 4 cut(s) 165, 401, 552, 689
EarI CTCTTC 4 cut(s) 165, 401, 552, 689
Ecl136II GAGCTC 2 cut(s) 36, 775
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 506
Eco24I GRGCYC 3 cut(s) 38, 777, 935
Eco47I GGWCC 2 cut(s) 385, 879
Eco53kI GAGCTC 2 cut(s) 36, 775
EcoICRI GAGCTC 2 cut(s) 36, 775
EcoNI CCTNNNNNAGG 2 cut(s) 557, 599
EcoO109I RGGNCCY 2 cut(s) 385, 613
EcoRII CCWGG 6 cut(s) 133, 174, 387, 552, 836, 1109
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 943
EcoT38I GRGCYC 3 cut(s) 38, 777, 935
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 7 cut(s) 67, 102, 406, 623, 730, 832, 922
FaqI GGGAC 2 cut(s) 865, 929
FatI CATG 7 cut(s) 63, 98, 402, 619, 726, 828, 918
FbaI TGATCA 1 cut(s) 846
Fnu4HI GCNGC 3 cut(s) 223, 572, 686
FokI GGATG 4 cut(s) 278, 935, 980, 1102
FriOI GRGCYC 3 cut(s) 38, 777, 935
Fsp4HI GCNGC 3 cut(s) 223, 572, 686
FspBI CTAG 2 cut(s) 399, 627
GluI GCNGC 3 cut(s) 223, 572, 686
GsuI CTGGAG 5 cut(s) 332, 554, 674, 773, 1118
HaeIII GGCC 4 cut(s) 97, 506, 584, 615
HapII CCGG 1 cut(s) 913
Hin1II CATG 7 cut(s) 67, 102, 406, 623, 730, 832, 922
HindIII AAGCTT 2 cut(s) 165, 425
HinfI GANTC 2 cut(s) 56, 419
HpaII CCGG 1 cut(s) 913
HphI GGTGA 4 cut(s) 79, 542, 880, 917
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 601
Hpy188III TCNNGA 8 cut(s) 105, 533, 565, 691, 722, 790, 896, 982
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 6 cut(s) 216, 460, 626, 626, 727, 896
HpyCH4III ACNGT 1 cut(s) 1061
HpyCH4IV ACGT 2 cut(s) 9, 1011
HpyCH4V TGCA 7 cut(s) 196, 305, 492, 511, 941, 993, 1002
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 302, 767, 999, 1076
HpyF3I CTNAG 7 cut(s) 251, 273, 600, 609, 663, 669, 771
HpySE526I ACGT 2 cut(s) 9, 1011
Hsp92II CATG 7 cut(s) 67, 102, 406, 623, 730, 832, 922
KpnI GGTACC 1 cut(s) 657
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 3 cut(s) 645, 784, 846
LguI GCTCTTC 1 cut(s) 689
LmnI GCTCC 6 cut(s) 230, 277, 496, 693, 766, 1096
Lsp1109I GCAGC 2 cut(s) 583, 697
LweI GCATC 5 cut(s) 205, 256, 520, 950, 958
MaeI CTAG 2 cut(s) 399, 627
MaeII ACGT 2 cut(s) 9, 1011
MaeIII GTNAC 8 cut(s) 143, 256, 548, 604, 722, 824, 1037, 1061
MalI GATC 3 cut(s) 647, 786, 848
MboI GATC 3 cut(s) 645, 784, 846
MboII GAAGA 8 cut(s) 90, 152, 418, 569, 655, 706, 920, 1119
MflI RGATCY 1 cut(s) 784
MhlI GDGCHC 3 cut(s) 38, 777, 935
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 943
MroXI GAANNNNTTC 2 cut(s) 112, 891
MseI TTAA 6 cut(s) 74, 440, 519, 675, 1074, 1144
MslI CAYNNNNRTG 1 cut(s) 18
MspCI CTTAAG 1 cut(s) 73
MspI CCGG 1 cut(s) 913
MspR9I CCNGG 7 cut(s) 135, 176, 389, 554, 838, 914, 1111
MvaI CCWGG 6 cut(s) 135, 176, 389, 554, 838, 1111
MwoI GCNNNNNNNGC 5 cut(s) 228, 302, 767, 999, 1076
NciI CCSGG 1 cut(s) 914
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 645, 784, 846
NlaIII CATG 7 cut(s) 67, 102, 406, 623, 730, 832, 922
NlaIV GGNNCC 3 cut(s) 226, 655, 881
NmuCI GTSAC 5 cut(s) 143, 548, 604, 722, 1061
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 1 cut(s) 832
PaqCI CACCTGC 1 cut(s) 856
PceI AGGCCT 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 689
PdmI GAANNNNTTC 2 cut(s) 112, 891
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 387
PkrI GCNGC 3 cut(s) 224, 573, 687
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 385
Psp124BI GAGCTC 2 cut(s) 38, 777
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 6 cut(s) 133, 174, 387, 552, 836, 1109
PspGI CCWGG 6 cut(s) 133, 174, 387, 552, 836, 1109
PspN4I GGNNCC 3 cut(s) 226, 655, 881
PspPI GGNCC 3 cut(s) 385, 613, 879
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 388
PsuI RGATCY 1 cut(s) 784
RsaI GTAC 3 cut(s) 12, 655, 1010
RsaNI GTAC 3 cut(s) 11, 654, 1009
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 2 cut(s) 38, 777
SapI GCTCTTC 1 cut(s) 689
SaqAI TTAA 6 cut(s) 74, 440, 519, 675, 1074, 1144
SatI GCNGC 3 cut(s) 223, 572, 686
Sau3AI GATC 3 cut(s) 645, 784, 846
Sau96I GGNCC 3 cut(s) 385, 613, 879
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 7 cut(s) 135, 176, 389, 554, 838, 914, 1111
SduI GDGCHC 3 cut(s) 38, 777, 935
SfaNI GCATC 5 cut(s) 205, 256, 520, 950, 958
SinI GGWCC 2 cut(s) 385, 879
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 3 cut(s) 73, 91, 776
SmoI CTYRAG 3 cut(s) 73, 91, 776
Sse9I AATT 1 cut(s) 214
SseBI AGGCCT 1 cut(s) 506
SsiI CCGC 2 cut(s) 222, 1097
SspMI CTAG 2 cut(s) 399, 627
SstI GAGCTC 2 cut(s) 38, 777
StuI AGGCCT 1 cut(s) 506
StyD4I CCNGG 7 cut(s) 133, 174, 387, 552, 836, 912, 1109
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 1061
TaiI ACGT 2 cut(s) 12, 1014
TaqI TCGA 1 cut(s) 366
TasI AATT 1 cut(s) 214
TauI GCSGC 1 cut(s) 225
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 6 cut(s) 74, 440, 519, 675, 1074, 1144
Tru9I TTAA 6 cut(s) 74, 440, 519, 675, 1074, 1144
TscAI CASTG 1 cut(s) 1004
TseFI GTSAC 5 cut(s) 143, 548, 604, 722, 1061
TseI GCWGC 2 cut(s) 571, 685
Tsp45I GTSAC 5 cut(s) 143, 548, 604, 722, 1061
TspDTI ATGAA 3 cut(s) 300, 419, 608
TspRI CASTG 1 cut(s) 1004
Van91I CCANNNNNTGG 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 385, 879
XagI CCTNNNNNAGG 2 cut(s) 557, 599
XceI RCATGY 1 cut(s) 832
XmnI GAANNNNTTC 2 cut(s) 112, 891
XspI CTAG 2 cut(s) 399, 627
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.