Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002266

Physical Location & Seq

Genomic Coordinates Forward (+)

30028288 .. 30030606

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1170700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGGATACATCGTCAGAAAGGGCAGGCCGGCAAGTGACCTCTTCGCATCGAGTTGGGAATCAACAATGGTGAGCTTAAGAAGACACACACACTATAGACTATGTGCTGGGAGAACTCCACTTCCTAAGTTCTCTGACATCAGAACTGCTTCTCAATATCCCAACCACGAAAAACCAAAAAGTTCGCATCCTACGTGTTCAAATAATGTAATTAATCGGCCAGAGGGGAATAGGACTGCTATAGGGGCTTCGGCTAAGAGTTTCACTGATGCAGTGCTGGCTTTGCCCGCTTTTGTAACTGTGGGAAATGAGGCAGGACGCTCTCGTATACACAAGCTGCATTTTCAGAAAAATGGGGATTCTCTTTGGGTTAACGGATCTCAAAGCAGCCAAGTTAGTTCCTTGGAGAACCAAGTAAATGATCCAGGGTTTGATGTATCTCTAAGCCAAGTTAAATCCATGGAGAGCCAAGTAAAAGACCCAGGGGATAAAGTTCTAAGCAGCCAAGTTGAATCCTTGCAGAGCCTAGTAAAATACCCGGAAGCTGACGTATCTCTAAGCAGCCAAAATGAATCCTTGCAGAGCCAAGTAAAAGACCCTGAAGCTGACGTATCTCCAAGCAGCCAGGTTAAATCCTCGGAGAACCAAGTAAACGACCCAGGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.24

Weight (kDa)

7.02

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g18500 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510 FvH4_2g18510
malus_domestica	MD05G1170700.v1.1
prunus_persica	Prupe.8G198000_v2.0.a1 Prupe.8G198100_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198200_v2.0.a1 Prupe.8G198300_v2.0.a1 Prupe.8G198400_v2.0.a1
pyrus_communis	pycom05g15790
rosa_chinensis	RchiOBHm_Chr6g0284021 RchiOBHm_Chr6g0284061
rosa_laevigata	RLG00000012773 RLG00000012776
rosa_multiflora	Rmu_sc0003102.1_g000003 Rmu_sc0015649.1_g000013 Rmu_ssc0000442.1_g000043
rosa_roxburghii	Rroxscaffold_7G00183920 Rroxscaffold_7G00184970
rosa_rugosa	Rorug06G0159400 Rorug06G0159500 Rorug06G0159600 Rorug06G0160100
rosa_samantha	Rh6AG272700 Rh6AG272800 Rh6AG272900 Rh6AG273200 Rh6BG273300 Rh6BG273700 Rh6BG273800 Rh6CG274500 Rh6CG274600 Rh6CG274700 Rh6CG275300 Rh6CG283300 Rh6DG267700 Rh6DG268200
rosa_wichuraiana	Rw6G023480 Rw6G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	331
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	388, 419
AcoI	YGGCCR	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	624
AflII	CTTAAG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	204, 515
AjnI	CCWGG	4 cut(s)	427, 484, 627, 661
AloI	GAACNNNNNNTCC	2 cut(s)	109, 141
AluBI	AGCT	4 cut(s)	78, 340, 548, 608
AluI	AGCT	4 cut(s)	78, 340, 548, 608
AlwI	GGATC	2 cut(s)	388, 419
AoxI	GGCC	2 cut(s)	29, 221
ApeKI	GCWGC	5 cut(s)	340, 390, 504, 564, 624
AseI	ATTAAT	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	5 cut(s)	327, 402, 516, 576, 636
BciT130I	CCWGG	4 cut(s)	429, 486, 629, 663
BcnI	CCSGG	1 cut(s)	542
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	2 cut(s)	97, 243
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	5 cut(s)	341, 391, 505, 565, 625
BlsI	GCNGC	5 cut(s)	342, 392, 506, 566, 626
Bme1390I	CCNGG	5 cut(s)	429, 486, 542, 629, 663
BmrFI	CCNGG	5 cut(s)	429, 486, 542, 629, 663
BmsI	GCATC	3 cut(s)	59, 199, 262
BpiI	GAAGAC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	198
BsaJI	CCNNGG	8 cut(s)	405, 428, 462, 484, 485, 639, 661, 662
Bse118I	RCCGGY	1 cut(s)	31
BseBI	CCWGG	4 cut(s)	429, 486, 629, 663
BseDI	CCNNGG	8 cut(s)	405, 428, 462, 484, 485, 639, 661, 662
BseGI	GGATG	1 cut(s)	190
BseXI	GCAGC	5 cut(s)	327, 402, 516, 576, 636
BseYI	CCCAGC	1 cut(s)	110
BshFI	GGCC	2 cut(s)	31, 223
BsiSI	CCGG	2 cut(s)	32, 542
BsnI	GGCC	2 cut(s)	31, 223
Bsp143I	GATC	2 cut(s)	380, 424
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	31, 223
BspPI	GGATC	2 cut(s)	388, 419
BspTI	CTTAAG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	8 cut(s)	405, 428, 462, 484, 485, 639, 661, 662
BssMI	GATC	2 cut(s)	380, 424
BssNAI	GTATAC	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	405, 462
Bst1107I	GTATAC	1 cut(s)	332
Bst2UI	CCWGG	4 cut(s)	429, 486, 629, 663
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	198
BstC8I	GCNNGC	4 cut(s)	29, 33, 282, 291
BstDEI	CTNAG	5 cut(s)	129, 258, 446, 500, 560
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	383, 427
BstMBI	GATC	2 cut(s)	380, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 281, 286, 290
BstNI	CCWGG	4 cut(s)	429, 486, 629, 663
BstSCI	CCNGG	5 cut(s)	427, 484, 540, 627, 661
BstSFI	CTRYAG	2 cut(s)	97, 243
BstV1I	GCAGC	5 cut(s)	327, 402, 516, 576, 636
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BstZ17I	GTATAC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	31, 223
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	267, 282
Cac8I	GCNNGC	4 cut(s)	29, 33, 282, 291
Cfr10I	RCCGGY	1 cut(s)	31
CseI	GACGC	1 cut(s)	330
CviAII	CATG	1 cut(s)	463
DdeI	CTNAG	5 cut(s)	129, 258, 446, 500, 560
DpnI	GATC	2 cut(s)	382, 426
DpnII	GATC	2 cut(s)	380, 424
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	405, 462
Eco57I	CTGAAG	1 cut(s)	624
EcoRII	CCWGG	4 cut(s)	427, 484, 627, 661
EcoT14I	CCWWGG	2 cut(s)	405, 462
ErhI	CCWWGG	2 cut(s)	405, 462
FaeI	CATG	1 cut(s)	466
FaiI	YATR	5 cut(s)	99, 106, 245, 332, 464
FatI	CATG	1 cut(s)	462
FauI	CCCGC	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	341, 391, 505, 565, 625
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	341, 391, 505, 565, 625
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	5 cut(s)	341, 391, 505, 565, 625
GsaI	CCCAGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	31, 223
HapII	CCGG	2 cut(s)	32, 542
HgaI	GACGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	466
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	4 cut(s)	62, 362, 515, 575
HpaI	GTTAAC	1 cut(s)	376
HpaII	CCGG	2 cut(s)	32, 542
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	3 cut(s)	332, 376, 655
Hpy188I	TCNGA	5 cut(s)	20, 139, 146, 351, 643
Hpy8I	GTNNAC	3 cut(s)	332, 376, 655
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	3 cut(s)	197, 552, 612
HpyCH4V	TGCA	4 cut(s)	275, 343, 523, 583
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 281, 286, 290
HpyF3I	CTNAG	5 cut(s)	129, 258, 446, 500, 560
HpySE526I	ACGT	3 cut(s)	197, 552, 612
Hsp92II	CATG	1 cut(s)	466
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	380, 424
Lsp1109I	GCAGC	5 cut(s)	327, 402, 516, 576, 636
LweI	GCATC	3 cut(s)	59, 199, 262
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	3 cut(s)	197, 552, 612
MaeIII	GTNAC	2 cut(s)	38, 298
MalI	GATC	2 cut(s)	382, 426
MboI	GATC	2 cut(s)	380, 424
MboII	GAAGA	2 cut(s)	37, 96
MflI	RGATCY	1 cut(s)	380
MluCI	AATT	1 cut(s)	213
MnlI	CCTC	4 cut(s)	53, 220, 307, 649
MroNI	GCCGGC	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	151
MseI	TTAA	5 cut(s)	80, 216, 375, 456, 633
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	2 cut(s)	32, 542
MspR9I	CCNGG	5 cut(s)	429, 486, 542, 629, 663
MvaI	CCWGG	4 cut(s)	429, 486, 629, 663
MwoI	GCNNNNNNNGC	4 cut(s)	248, 281, 286, 290
NaeI	GCCGGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	2 cut(s)	380, 424
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	38
PasI	CCCWGGG	2 cut(s)	485, 662
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PdiI	GCCGGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	151
PfeI	GAWTC	4 cut(s)	62, 362, 515, 575
PkrI	GCNGC	5 cut(s)	342, 392, 506, 566, 626
Ppu21I	YACGTR	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	4 cut(s)	427, 484, 627, 661
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	4 cut(s)	427, 484, 627, 661
PsuI	RGATCY	1 cut(s)	380
SaqAI	TTAA	5 cut(s)	80, 216, 375, 456, 633
SatI	GCNGC	5 cut(s)	341, 391, 505, 565, 625
Sau3AI	GATC	2 cut(s)	380, 424
ScrFI	CCNGG	5 cut(s)	429, 486, 542, 629, 663
SetI	ASST	9 cut(s)	45, 80, 200, 342, 550, 555, 610, 615, 633
SfaNI	GCATC	3 cut(s)	59, 199, 262
SfcI	CTRYAG	2 cut(s)	97, 243
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	5 cut(s)	427, 484, 540, 627, 661
StyI	CCWWGG	2 cut(s)	405, 462
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	3 cut(s)	200, 555, 615
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	4 cut(s)	62, 362, 515, 575
Tru1I	TTAA	5 cut(s)	80, 216, 375, 456, 633
Tru9I	TTAA	5 cut(s)	80, 216, 375, 456, 633
TscAI	CASTG	2 cut(s)	274, 282
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	5 cut(s)	340, 390, 504, 564, 624
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	588
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	274, 282
Vha464I	CTTAAG	1 cut(s)	79
VspI	ATTAAT	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	151
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.